Screen Resolution:     
Welcome to HRGRN
A Graph Search-Empowered Integrative Database of Arabidopsis Signaling Transduction, Metabolism and Gene Regulation Networks   
Location:  Home > Details for node AT5G58420
Type: Protein GRN ID: np35896 Name:
Annotation: Ribosomal protein S4 (RPS4A) family protein
Gene Locus: AT5G58420
Gene Expression (Affy ATH1 probeset): 247815_at    
Graph Customization
   
Choose color for highlight:  
Display edge: validated and predicted
Display node/edge prompt:
Layout:
 as format     
Data Filter
 Protein modification
 Protein-protein interaction
        also include predicted relationship
 Compound-protein interaction
 TF-target gene regulation
 Small RNA-target regulation
        also include predicted relationship
 Carrier and transported molecule
 Catalytic chemical reaction
 Co-expressed gene pair
        with mutual information value >

  Ignore nodes having > relationships
 
Relationship type:  protein modification     catalytic chemical reaction     protein-protein interaction    
compound-protein interaction     TF-target gene regulation     small RNA-target regulation    
co-expressed gene pair     carrier and transported molecule     family/complex and member
Relationship evidence:  Solid line: validated          Dashed line: predicted
Relationship direction: Arrow: positive          T shape: negative          None arrow: unknown or n/a
Hormone association: Thicker line: hormone related relationship         : hormone related Node
Node type:  Transcription factor or transcriptional regulator       Compound       Kinase
 Small regulatory RNA (miRNA & ta-siRNA)       Other nodes
No. Path
2 AT5G58420  --  has similar expression pattern (mutual information value=1.35826) with  --  RPL24A
3 AT5G58420  --  has similar expression pattern (mutual information value=0.910889) with  --  AT2G41840
4 AT5G58420  --  has similar expression pattern (mutual information value=1.32844) with  --  AT3G07110
5 AT5G58420  --  has similar expression pattern (mutual information value=1.01198) with  --  CARA; VEN6
6 AT5G58420  --  has similar expression pattern (mutual information value=1.20587) with  --  RACK1B; RACK1B_AT
7 AT5G58420  --  has similar expression pattern (mutual information value=0.863534) with  --  emb1027
8 AT5G58420  --  has similar expression pattern (mutual information value=0.89635) with  --  ATPRMT5; PRMT5; SKB1
9 AT5G58420  --  has similar expression pattern (mutual information value=1.27414) with  --  AT3G44590
10 AT5G58420  --  has similar expression pattern (mutual information value=1.29283) with  --  AT5G60670
11 AT5G58420  --  has similar expression pattern (mutual information value=1.35826) with  --  RPL24A  --  interacts with  --  AT5G61200
12 AT5G58420  --  has similar expression pattern (mutual information value=1.35826) with  --  RPL24A  --  interacts with  --  AtMC9; AtMCP2f; MC9; MCP2f
13 AT5G58420  --  has similar expression pattern (mutual information value=1.35826) with  --  RPL24A  --  has similar expression pattern (mutual information value=1.06679) with  --  AT2G44120
14 AT5G58420  --  has similar expression pattern (mutual information value=1.35826) with  --  RPL24A  --  has similar expression pattern (mutual information value=0.950973) with  --  RPL10B
15 AT5G58420  --  has similar expression pattern (mutual information value=1.35826) with  --  RPL24A  --  has similar expression pattern (mutual information value=1.30905) with  --  AT2G21580
16 AT5G58420  --  has similar expression pattern (mutual information value=1.35826) with  --  RPL24A  --  has similar expression pattern (mutual information value=1.21676) with  --  RPL27A; RPL27AB
17 AT5G58420  --  has similar expression pattern (mutual information value=1.35826) with  --  RPL24A  --  has similar expression pattern (mutual information value=1.39726) with  --  AT1G77940
18 AT5G58420  --  has similar expression pattern (mutual information value=1.35826) with  --  RPL24A  --  has similar expression pattern (mutual information value=1.07375) with  --  AT1G80750
19 AT5G58420  --  has similar expression pattern (mutual information value=1.35826) with  --  RPL24A  --  has similar expression pattern (mutual information value=1.06563) with  --  RPL10; RPL10A; SAC52
20 AT5G58420  --  has similar expression pattern (mutual information value=1.35826) with  --  RPL24A  --  has similar expression pattern (mutual information value=1.08517) with  --  AT1G29250
21 AT5G58420  --  has similar expression pattern (mutual information value=1.35826) with  --  RPL24A  --  has similar expression pattern (mutual information value=1.16077) with  --  AT2G43460
22 AT5G58420  --  has similar expression pattern (mutual information value=1.35826) with  --  RPL24A  --  has similar expression pattern (mutual information value=1.30042) with  --  AT3G05560
23 AT5G58420  --  has similar expression pattern (mutual information value=1.35826) with  --  RPL24A  --  has similar expression pattern (mutual information value=1.02727) with  --  RPL18
24 AT5G58420  --  has similar expression pattern (mutual information value=1.35826) with  --  RPL24A  --  has similar expression pattern (mutual information value=1.1895) with  --  AT3G09680
25 AT5G58420  --  has similar expression pattern (mutual information value=1.35826) with  --  RPL24A  --  has similar expression pattern (mutual information value=1.1895) with  --  AT5G02960
26 AT5G58420  --  has similar expression pattern (mutual information value=1.35826) with  --  RPL24A  --  has similar expression pattern (mutual information value=1.14108) with  --  AT3G22230
27 AT5G58420  --  has similar expression pattern (mutual information value=1.35826) with  --  RPL24A  --  has similar expression pattern (mutual information value=1.17469) with  --  AT4G29390
28 AT5G58420  --  has similar expression pattern (mutual information value=1.35826) with  --  RPL24A  --  has similar expression pattern (mutual information value=1.41097) with  --  EMB1080
29 AT5G58420  --  has similar expression pattern (mutual information value=1.35826) with  --  RPL24A  --  has similar expression pattern (mutual information value=1.02739) with  --  AT3G49080
30 AT5G58420  --  has similar expression pattern (mutual information value=1.35826) with  --  RPL24A  --  has similar expression pattern (mutual information value=1.01962) with  --  AT3G58700
31 AT5G58420  --  has similar expression pattern (mutual information value=1.35826) with  --  RPL24A  --  has similar expression pattern (mutual information value=1.26449) with  --  AT5G03850
32 AT5G58420  --  has similar expression pattern (mutual information value=1.35826) with  --  RPL24A  --  has similar expression pattern (mutual information value=1.04579) with  --  AT5G47700
33 AT5G58420  --  has similar expression pattern (mutual information value=1.35826) with  --  RPL24A  --  has similar expression pattern (mutual information value=1.53774) with  --  AT5G16130
34 AT5G58420  --  has similar expression pattern (mutual information value=1.35826) with  --  RPL24A  --  has similar expression pattern (mutual information value=1.22107) with  --  AT4G16720
35 AT5G58420  --  has similar expression pattern (mutual information value=0.910889) with  --  AT2G41840  --  interacts with  --  AT4G02220
36 AT5G58420  --  has similar expression pattern (mutual information value=0.910889) with  --  AT2G41840  --  has similar expression pattern (mutual information value=1.10963) with  --  AT3G02560
37 AT5G58420  --  has similar expression pattern (mutual information value=0.910889) with  --  AT2G41840  --  has similar expression pattern (mutual information value=0.871595) with  --  AT2G33370
38 AT5G58420  --  has similar expression pattern (mutual information value=0.910889) with  --  AT2G41840  --  has similar expression pattern (mutual information value=0.854242) with  --  AT5G02450
39 AT5G58420  --  has similar expression pattern (mutual information value=0.910889) with  --  AT2G41840  --  has similar expression pattern (mutual information value=0.924818) with  --  ATRAN3; RAN3
40 AT5G58420  --  has similar expression pattern (mutual information value=0.910889) with  --  AT2G41840  --  has similar expression pattern (mutual information value=1.04274) with  --  AT5G19510
41 AT5G58420  --  has similar expression pattern (mutual information value=1.32844) with  --  AT3G07110  --  has similar expression pattern (mutual information value=1.39054) with  --  AT2G27720
42 AT5G58420  --  has similar expression pattern (mutual information value=1.32844) with  --  AT3G07110  --  has similar expression pattern (mutual information value=1.36741) with  --  AT2G27710
43 AT5G58420  --  has similar expression pattern (mutual information value=1.32844) with  --  AT3G07110  --  has similar expression pattern (mutual information value=1.23419) with  --  AT2G42910
44 AT5G58420  --  has similar expression pattern (mutual information value=1.32844) with  --  AT3G07110  --  has similar expression pattern (mutual information value=1.25705) with  --  AT1G26880
45 AT5G58420  --  has similar expression pattern (mutual information value=1.32844) with  --  AT3G07110  --  has similar expression pattern (mutual information value=1.32218) with  --  TOM6
46 AT5G58420  --  has similar expression pattern (mutual information value=1.32844) with  --  AT3G07110  --  has similar expression pattern (mutual information value=1.27964) with  --  NOP56
47 AT5G58420  --  has similar expression pattern (mutual information value=1.32844) with  --  AT3G07110  --  has similar expression pattern (mutual information value=1.26716) with  --  AT1G55890
48 AT5G58420  --  has similar expression pattern (mutual information value=1.32844) with  --  AT3G07110  --  has similar expression pattern (mutual information value=1.06565) with  --  AT1G73230
49 AT5G58420  --  has similar expression pattern (mutual information value=1.32844) with  --  AT3G07110  --  has similar expression pattern (mutual information value=1.18922) with  --  ATVDAC1; VDAC1
50 AT5G58420  --  has similar expression pattern (mutual information value=1.32844) with  --  AT3G07110  --  has similar expression pattern (mutual information value=1.01511) with  --  RPS2
51 AT5G58420  --  has similar expression pattern (mutual information value=1.32844) with  --  AT3G07110  --  has similar expression pattern (mutual information value=1.11758) with  --  AT3G01790
52 AT5G58420  --  has similar expression pattern (mutual information value=1.32844) with  --  AT3G07110  --  has similar expression pattern (mutual information value=1.14318) with  --  RPS10
53 AT5G58420  --  has similar expression pattern (mutual information value=1.32844) with  --  AT3G07110  --  has similar expression pattern (mutual information value=1.24395) with  --  AT3G11250
54 AT5G58420  --  has similar expression pattern (mutual information value=1.32844) with  --  AT3G07110  --  has similar expression pattern (mutual information value=1.3826) with  --  AT4G12600
55 AT5G58420  --  has similar expression pattern (mutual information value=1.32844) with  --  AT3G07110  --  has similar expression pattern (mutual information value=1.36382) with  --  AT4G25740
56 AT5G58420  --  has similar expression pattern (mutual information value=1.32844) with  --  AT3G07110  --  has similar expression pattern (mutual information value=1.25083) with  --  AT3G60770
57 AT5G58420  --  has similar expression pattern (mutual information value=1.32844) with  --  AT3G07110  --  has similar expression pattern (mutual information value=1.30271) with  --  AT2G05220
58 AT5G58420  --  has similar expression pattern (mutual information value=1.32844) with  --  AT3G07110  --  has similar expression pattern (mutual information value=1.30271) with  --  AT5G04800
59 AT5G58420  --  has similar expression pattern (mutual information value=1.32844) with  --  AT3G07110  --  has similar expression pattern (mutual information value=1.30271) with  --  AT2G04390
60 AT5G58420  --  has similar expression pattern (mutual information value=1.32844) with  --  AT3G07110  --  has similar expression pattern (mutual information value=1.43522) with  --  AT5G47930
61 AT5G58420  --  has similar expression pattern (mutual information value=1.32844) with  --  AT3G07110  --  has similar expression pattern (mutual information value=1.27193) with  --  AT5G52650
62 AT5G58420  --  has similar expression pattern (mutual information value=1.32844) with  --  AT3G07110  --  has similar expression pattern (mutual information value=1.48976) with  --  AT5G61170
63 AT5G58420  --  has similar expression pattern (mutual information value=1.01198) with  --  CARA; VEN6  --  interacts with  --  CARB; VEN3
64 AT5G58420  --  has similar expression pattern (mutual information value=1.01198) with  --  CARA; VEN6  --  has similar expression pattern (mutual information value=0.91984) with  --  OTC
65 AT5G58420  --  has similar expression pattern (mutual information value=1.01198) with  --  CARA; VEN6  --  has similar expression pattern (mutual information value=0.859264) with  --  emb2742
66 AT5G58420  --  has similar expression pattern (mutual information value=1.01198) with  --  CARA; VEN6  --  has similar expression pattern (mutual information value=1.09995) with  --  PYRB
67 AT5G58420  --  has similar expression pattern (mutual information value=1.01198) with  --  CARA; VEN6  --  has similar expression pattern (mutual information value=0.901042) with  --  AT1G16870
68 AT5G58420  --  has similar expression pattern (mutual information value=1.01198) with  --  CARA; VEN6  --  has similar expression pattern (mutual information value=0.822059) with  --  ATIMPALPHA3; IMPA-3; MOS6
69 AT5G58420  --  has similar expression pattern (mutual information value=1.01198) with  --  CARA; VEN6  --  has similar expression pattern (mutual information value=0.839752) with  --  ADSS
70 AT5G58420  --  has similar expression pattern (mutual information value=1.01198) with  --  CARA; VEN6  --  has similar expression pattern (mutual information value=0.876332) with  --  AT3G58610
71 AT5G58420  --  has similar expression pattern (mutual information value=1.01198) with  --  CARA; VEN6  --  has similar expression pattern (mutual information value=0.853539) with  --  AT5G10010
72 AT5G58420  --  has similar expression pattern (mutual information value=1.01198) with  --  CARA; VEN6  --  has product (in catalytic reaction)  --  Carbamoyl phosphate
73 AT5G58420  --  has similar expression pattern (mutual information value=1.20587) with  --  RACK1B; RACK1B_AT  --  interacts with  --  ftsh3
74 AT5G58420  --  has similar expression pattern (mutual information value=1.20587) with  --  RACK1B; RACK1B_AT  --  interacts with  --  ATWNK8; EIP1; WNK8
75 AT5G58420  --  has similar expression pattern (mutual information value=1.20587) with  --  RACK1B; RACK1B_AT  --  interacts with  --  PIRL4
76 AT5G58420  --  has similar expression pattern (mutual information value=1.20587) with  --  RACK1B; RACK1B_AT  --  interacts with  --  AT5G48650
77 AT5G58420  --  has similar expression pattern (mutual information value=1.20587) with  --  RACK1B; RACK1B_AT  --  interacts with  --  AT5G43960
78 AT5G58420  --  has similar expression pattern (mutual information value=1.20587) with  --  RACK1B; RACK1B_AT  --  interacts with  --  SE
79 AT5G58420  --  has similar expression pattern (mutual information value=1.20587) with  --  RACK1B; RACK1B_AT  --  has similar expression pattern (mutual information value=0.846337) with  --  AT1G14810
80 AT5G58420  --  has similar expression pattern (mutual information value=1.20587) with  --  RACK1B; RACK1B_AT  --  has similar expression pattern (mutual information value=1.16573) with  --  AT3G04840
81 AT5G58420  --  has similar expression pattern (mutual information value=1.20587) with  --  RACK1B; RACK1B_AT  --  has similar expression pattern (mutual information value=0.997471) with  --  AT3G14390
82 AT5G58420  --  has similar expression pattern (mutual information value=1.20587) with  --  RACK1B; RACK1B_AT  --  has similar expression pattern (mutual information value=0.997471) with  --  AT5G11880
83 AT5G58420  --  has similar expression pattern (mutual information value=1.20587) with  --  RACK1B; RACK1B_AT  --  has similar expression pattern (mutual information value=0.851738) with  --  AT4G24830
84 AT5G58420  --  has similar expression pattern (mutual information value=0.863534) with  --  emb1027  --  has product (in catalytic reaction)  --  L-Arginyl-tRNA(Arg)
85 AT5G58420  --  has similar expression pattern (mutual information value=0.89635) with  --  ATPRMT5; PRMT5; SKB1  --  has similar expression pattern (mutual information value=1.0764) with  --  AT2G05140
86 AT5G58420  --  has similar expression pattern (mutual information value=0.89635) with  --  ATPRMT5; PRMT5; SKB1  --  has similar expression pattern (mutual information value=1.0764) with  --  AT2G37690
87 AT5G58420  --  has similar expression pattern (mutual information value=0.89635) with  --  ATPRMT5; PRMT5; SKB1  --  has similar expression pattern (mutual information value=0.910088) with  --  DECOY
88 AT5G58420  --  has similar expression pattern (mutual information value=0.89635) with  --  ATPRMT5; PRMT5; SKB1  --  has similar expression pattern (mutual information value=1.06259) with  --  PPR596
89 AT5G58420  --  has similar expression pattern (mutual information value=0.89635) with  --  ATPRMT5; PRMT5; SKB1  --  has similar expression pattern (mutual information value=1.05745) with  --  TOM40
90 AT5G58420  --  has similar expression pattern (mutual information value=0.89635) with  --  ATPRMT5; PRMT5; SKB1  --  has similar expression pattern (mutual information value=0.910552) with  --  ATNUP160; NUP160; SAR1
91 AT5G58420  --  has similar expression pattern (mutual information value=0.89635) with  --  ATPRMT5; PRMT5; SKB1  --  has similar expression pattern (mutual information value=0.936514) with  --  AT4G38890
92 AT5G58420  --  has similar expression pattern (mutual information value=1.27414) with  --  AT3G44590  --  interacts with  --  emb2004
93 AT5G58420  --  has similar expression pattern (mutual information value=1.27414) with  --  AT3G44590  --  interacts with  --  AT1G55880
94 AT5G58420  --  has similar expression pattern (mutual information value=1.27414) with  --  AT3G44590  --  interacts with  --  AT1G01100
95 AT5G58420  --  has similar expression pattern (mutual information value=1.27414) with  --  AT3G44590  --  interacts with  --  GASA5
96 AT5G58420  --  has similar expression pattern (mutual information value=1.27414) with  --  AT3G44590  --  has similar expression pattern (mutual information value=1.08584) with  --  AT1G27400
97 AT5G58420  --  has similar expression pattern (mutual information value=1.27414) with  --  AT3G44590  --  has similar expression pattern (mutual information value=1.08171) with  --  AT3G23390
98 AT5G58420  --  has similar expression pattern (mutual information value=1.27414) with  --  AT3G44590  --  has similar expression pattern (mutual information value=1.22642) with  --  AtGRP4; GR-RBP4; GRP4
99 AT5G58420  --  has similar expression pattern (mutual information value=1.27414) with  --  AT3G44590  --  has similar expression pattern (mutual information value=0.818074) with  --  AT2G34050
100 AT5G58420  --  has similar expression pattern (mutual information value=1.27414) with  --  AT3G44590  --  has similar expression pattern (mutual information value=1.3339) with  --  AT1G07070
101 AT5G58420  --  has similar expression pattern (mutual information value=1.27414) with  --  AT3G44590  --  has similar expression pattern (mutual information value=1.19185) with  --  AT4G29410
102 AT5G58420  --  has similar expression pattern (mutual information value=1.27414) with  --  AT3G44590  --  has similar expression pattern (mutual information value=1.24734) with  --  ROC2
103 AT5G58420  --  has similar expression pattern (mutual information value=1.27414) with  --  AT3G44590  --  has similar expression pattern (mutual information value=0.876694) with  --  EIF(ISO)4E; EIF4E2; eIFiso4E; LSP; LSP1
104 AT5G58420  --  has similar expression pattern (mutual information value=1.27414) with  --  AT3G44590  --  has similar expression pattern (mutual information value=1.41628) with  --  AT5G59850
105 AT5G58420  --  has similar expression pattern (mutual information value=1.29283) with  --  AT5G60670  --  has similar expression pattern (mutual information value=1.20791) with  --  AT5G56670
106 AT5G58420  --  has similar expression pattern (mutual information value=1.29283) with  --  AT5G60670  --  has similar expression pattern (mutual information value=1.29386) with  --  RPS28
   Funding by the National Science Foundation    Funding by the Oklahoma Center for the Advancement of Science & Technology    Additional funding by the Samuel Roberts Noble Foundation

Copyright © The Zhao Lab

Disclaimer | Contact