Screen Resolution:     
Welcome to HRGRN
A Graph Search-Empowered Integrative Database of Arabidopsis Signaling Transduction, Metabolism and Gene Regulation Networks   
Location:  Home > Details for node AT1G55880
Type: Protein GRN ID: np10933 Name:
Annotation: Pyridoxal-5'-phosphate-dependent enzyme family protein [EC:2.5.1.47]
Gene Locus: AT1G55880
Gene Expression (Affy ATH1 probeset): 260594_at    
Graph Customization
   
Choose color for highlight:  
Display edge: validated and predicted
Display node/edge prompt:
Layout:
 as format     
Data Filter
 Protein modification
 Protein-protein interaction
        also include predicted relationship
 Compound-protein interaction
 TF-target gene regulation
 Small RNA-target regulation
        also include predicted relationship
 Carrier and transported molecule
 Catalytic chemical reaction
 Co-expressed gene pair
        with mutual information value >

  Ignore nodes having > relationships
 
Relationship type:  protein modification     catalytic chemical reaction     protein-protein interaction    
compound-protein interaction     TF-target gene regulation     small RNA-target regulation    
co-expressed gene pair     carrier and transported molecule     family/complex and member
Relationship evidence:  Solid line: validated          Dashed line: predicted
Relationship direction: Arrow: positive          T shape: negative          None arrow: unknown or n/a
Hormone association: Thicker line: hormone related relationship         : hormone related Node
Node type:  Transcription factor or transcriptional regulator       Compound       Kinase
 Small regulatory RNA (miRNA & ta-siRNA)       Other nodes
No. Path
2 AT1G55880  --  has product (in catalytic reaction)  --  Acetate
3 AT1G55880  --  has product (in catalytic reaction)  --  L-Cysteine
4 AT1G55880  --  interacts with  --  AT3G44590
5 AT1G55880  --  has product (in catalytic reaction)  --  Acetate  --  is product (in catalytic reaction) of  --  AT1G25210
6 AT1G55880  --  has product (in catalytic reaction)  --  Acetate  --  is product (in catalytic reaction) of  --  AT1G25145
7 AT1G55880  --  has product (in catalytic reaction)  --  Acetate  --  is product (in catalytic reaction) of  --  AT1G25054
8 AT1G55880  --  has product (in catalytic reaction)  --  Acetate  --  is product (in catalytic reaction) of  --  AT1G24793
9 AT1G55880  --  has product (in catalytic reaction)  --  Acetate  --  is product (in catalytic reaction) of  --  AT3G58130
10 AT1G55880  --  has product (in catalytic reaction)  --  Acetate  --  is product (in catalytic reaction) of  --  N-Acetyl-D-glucosaminylphosphatidylinositol
11 AT1G55880  --  has product (in catalytic reaction)  --  Acetate  --  is product (in catalytic reaction) of  --  AT2G27340
12 AT1G55880  --  has product (in catalytic reaction)  --  Acetate  --  is product (in catalytic reaction) of  --  AT4G17830
13 AT1G55880  --  has product (in catalytic reaction)  --  Acetate  --  is product (in catalytic reaction) of  --  N-Acetylornithine
14 AT1G55880  --  has product (in catalytic reaction)  --  Acetate  --  is product (in catalytic reaction) of  --  AT4G38220
15 AT1G55880  --  has product (in catalytic reaction)  --  Acetate  --  is product (in catalytic reaction) of  --  AT1G44820
16 AT1G55880  --  has product (in catalytic reaction)  --  Acetate  --  is product (in catalytic reaction) of  --  DES1
17 AT1G55880  --  has product (in catalytic reaction)  --  Acetate  --  is product (in catalytic reaction) of  --  Hydrogen sulfide
18 AT1G55880  --  has product (in catalytic reaction)  --  Acetate  --  is product (in catalytic reaction) of  --  O-Acetyl-L-serine
19 AT1G55880  --  has product (in catalytic reaction)  --  Acetate  --  is product (in catalytic reaction) of  --  ATCYS-3A; CYTACS1; OASA1; OLD3
20 AT1G55880  --  has product (in catalytic reaction)  --  Acetate  --  is product (in catalytic reaction) of  --  ARATH;BSAS3;1; ATCYSC1; CYSC1
21 AT1G55880  --  has product (in catalytic reaction)  --  Acetate  --  is product (in catalytic reaction) of  --  ATCS-C; OASC
22 AT1G55880  --  has product (in catalytic reaction)  --  Acetate  --  is product (in catalytic reaction) of  --  OASA2
23 AT1G55880  --  has product (in catalytic reaction)  --  Acetate  --  is product (in catalytic reaction) of  --  ATCYSD1; CYSD1
24 AT1G55880  --  has product (in catalytic reaction)  --  Acetate  --  is product (in catalytic reaction) of  --  CS26
25 AT1G55880  --  has product (in catalytic reaction)  --  Acetate  --  is product (in catalytic reaction) of  --  ACS1; ATCS-B; CPACS1; OASB
26 AT1G55880  --  has product (in catalytic reaction)  --  Acetate  --  is transported by  --  MDAR6
27 AT1G55880  --  has product (in catalytic reaction)  --  Acetate  --  is transported by  --  ATCSLA03; ATCSLA3; CSLA03; CSLA03; CSLA3
28 AT1G55880  --  has product (in catalytic reaction)  --  Acetate  --  is transported by  --  AT1G14820
29 AT1G55880  --  has product (in catalytic reaction)  --  L-Cysteine  --  has product (in catalytic reaction)  --  (R)-4'-Phosphopantothenoyl-L-cysteine
30 AT1G55880  --  has product (in catalytic reaction)  --  L-Cysteine  --  has product (in catalytic reaction)  --  gamma-L-Glutamyl-L-cysteine
31 AT1G55880  --  has product (in catalytic reaction)  --  L-Cysteine  --  has product (in catalytic reaction)  --  L-Cysteinyl-tRNA(Cys)
32 AT1G55880  --  has product (in catalytic reaction)  --  L-Cysteine  --  has product (in catalytic reaction)  --  3-Cyano-L-alanine
33 AT1G55880  --  has product (in catalytic reaction)  --  L-Cysteine  --  has product (in catalytic reaction)  --  [Enzyme]-cysteine
34 AT1G55880  --  has product (in catalytic reaction)  --  L-Cysteine  --  has product (in catalytic reaction)  --  [Enzyme]-S-sulfanylcysteine
35 AT1G55880  --  has product (in catalytic reaction)  --  L-Cysteine  --  has product (in catalytic reaction)  --  L-Cystathionine
36 AT1G55880  --  has product (in catalytic reaction)  --  L-Cysteine  --  is product (in catalytic reaction) of  --  FCLY
37 AT1G55880  --  has product (in catalytic reaction)  --  L-Cysteine  --  is product (in catalytic reaction) of  --  Farnesylcysteine
38 AT1G55880  --  has product (in catalytic reaction)  --  L-Cysteine  --  is product (in catalytic reaction) of  --  Prenyl-L-cysteine
39 AT1G55880  --  has product (in catalytic reaction)  --  L-Cysteine  --  is transported by  --  AT1G21890
40 AT1G55880  --  has product (in catalytic reaction)  --  L-Cysteine  --  is transported by  --  PHT1;8
41 AT1G55880  --  interacts with  --  AT3G44590  --  interacts with  --  emb2004
42 AT1G55880  --  interacts with  --  AT3G44590  --  interacts with  --  AT1G01100
43 AT1G55880  --  interacts with  --  AT3G44590  --  interacts with  --  GASA5
44 AT1G55880  --  interacts with  --  AT3G44590  --  has similar expression pattern (mutual information value=1.43385) with  --  RPL24A
45 AT1G55880  --  interacts with  --  AT3G44590  --  has similar expression pattern (mutual information value=1.08584) with  --  AT1G27400
46 AT1G55880  --  interacts with  --  AT3G44590  --  has similar expression pattern (mutual information value=0.906432) with  --  RPL10B
47 AT1G55880  --  interacts with  --  AT3G44590  --  has similar expression pattern (mutual information value=1.20315) with  --  AT1G29250
48 AT1G55880  --  interacts with  --  AT3G44590  --  has similar expression pattern (mutual information value=0.938729) with  --  AT2G41840
49 AT1G55880  --  interacts with  --  AT3G44590  --  has similar expression pattern (mutual information value=1.29653) with  --  AT3G05560
50 AT1G55880  --  interacts with  --  AT3G44590  --  has similar expression pattern (mutual information value=1.0477) with  --  AT3G04920
51 AT1G55880  --  interacts with  --  AT3G44590  --  has similar expression pattern (mutual information value=1.3164) with  --  AT3G07110
52 AT1G55880  --  interacts with  --  AT3G44590  --  has similar expression pattern (mutual information value=1.08171) with  --  AT3G23390
53 AT1G55880  --  interacts with  --  AT3G44590  --  has similar expression pattern (mutual information value=1.22642) with  --  AtGRP4; GR-RBP4; GRP4
54 AT1G55880  --  interacts with  --  AT3G44590  --  has similar expression pattern (mutual information value=1.02939) with  --  AT3G22230
55 AT1G55880  --  interacts with  --  AT3G44590  --  has similar expression pattern (mutual information value=0.818074) with  --  AT2G34050
56 AT1G55880  --  interacts with  --  AT3G44590  --  has similar expression pattern (mutual information value=1.06528) with  --  TOM40
57 AT1G55880  --  interacts with  --  AT3G44590  --  has similar expression pattern (mutual information value=1.3339) with  --  AT1G07070
58 AT1G55880  --  interacts with  --  AT3G44590  --  has similar expression pattern (mutual information value=1.19701) with  --  AT2G33370
59 AT1G55880  --  interacts with  --  AT3G44590  --  has similar expression pattern (mutual information value=1.19185) with  --  AT4G29410
60 AT1G55880  --  interacts with  --  AT3G44590  --  has similar expression pattern (mutual information value=1.17767) with  --  AT4G29390
61 AT1G55880  --  interacts with  --  AT3G44590  --  has similar expression pattern (mutual information value=1.1136) with  --  AT3G49080
62 AT1G55880  --  interacts with  --  AT3G44590  --  has similar expression pattern (mutual information value=1.24734) with  --  ROC2
63 AT1G55880  --  interacts with  --  AT3G44590  --  has similar expression pattern (mutual information value=1.08782) with  --  AT3G58700
64 AT1G55880  --  interacts with  --  AT3G44590  --  has similar expression pattern (mutual information value=1.3038) with  --  AT5G02450
65 AT1G55880  --  interacts with  --  AT3G44590  --  has similar expression pattern (mutual information value=0.876694) with  --  EIF(ISO)4E; EIF4E2; eIFiso4E; LSP; LSP1
66 AT1G55880  --  interacts with  --  AT3G44590  --  has similar expression pattern (mutual information value=1.27414) with  --  AT5G58420
67 AT1G55880  --  interacts with  --  AT3G44590  --  has similar expression pattern (mutual information value=1.41628) with  --  AT5G59850
68 AT1G55880  --  interacts with  --  AT3G44590  --  has similar expression pattern (mutual information value=1.35723) with  --  AT5G60670
69 AT1G55880  --  interacts with  --  AT3G44590  --  has similar expression pattern (mutual information value=1.15539) with  --  AT4G16720
   Funding by the National Science Foundation    Funding by the Oklahoma Center for the Advancement of Science & Technology    Additional funding by the Samuel Roberts Noble Foundation

Copyright © The Zhao Lab

Disclaimer | Contact