Screen Resolution:     
Welcome to HRGRN
A Graph Search-Empowered Integrative Database of Arabidopsis Signaling Transduction, Metabolism and Gene Regulation Networks   
Location:  Home > Details for node AT4G29410
Type: Protein GRN ID: np33480 Name:
Annotation: Ribosomal L28e protein family
Gene Locus: AT4G29410
Gene Expression (Affy ATH1 probeset): 253728_at    
Graph Customization
   
Choose color for highlight:  
Display edge: validated and predicted
Display node/edge prompt:
Layout:
 as format     
Data Filter
 Protein modification
 Protein-protein interaction
        also include predicted relationship
 Compound-protein interaction
 TF-target gene regulation
 Small RNA-target regulation
        also include predicted relationship
 Carrier and transported molecule
 Catalytic chemical reaction
 Co-expressed gene pair
        with mutual information value >

  Ignore nodes having > relationships
 
Relationship type:  protein modification     catalytic chemical reaction     protein-protein interaction    
compound-protein interaction     TF-target gene regulation     small RNA-target regulation    
co-expressed gene pair     carrier and transported molecule     family/complex and member
Relationship evidence:  Solid line: validated          Dashed line: predicted
Relationship direction: Arrow: positive          T shape: negative          None arrow: unknown or n/a
Hormone association: Thicker line: hormone related relationship         : hormone related Node
Node type:  Transcription factor or transcriptional regulator       Compound       Kinase
 Small regulatory RNA (miRNA & ta-siRNA)       Other nodes
No. Path
2 AT4G29410  --  has similar expression pattern (mutual information value=0.957894) with  --  AT2G44860
3 AT4G29410  --  has similar expression pattern (mutual information value=1.04396) with  --  AT2G37990
4 AT4G29410  --  has similar expression pattern (mutual information value=1.1538) with  --  AT1G27400
5 AT4G29410  --  has similar expression pattern (mutual information value=1.27966) with  --  AT1G80750
6 AT4G29410  --  has similar expression pattern (mutual information value=0.935448) with  --  DECOY
7 AT4G29410  --  has similar expression pattern (mutual information value=1.52948) with  --  AT3G05560
8 AT4G29410  --  has similar expression pattern (mutual information value=0.942133) with  --  RPL18
9 AT4G29410  --  has similar expression pattern (mutual information value=1.31694) with  --  AT3G06680
10 AT4G29410  --  has similar expression pattern (mutual information value=1.19185) with  --  AT3G44590
11 AT4G29410  --  has similar expression pattern (mutual information value=0.870655) with  --  EIF(ISO)4E; EIF4E2; eIFiso4E; LSP; LSP1
12 AT4G29410  --  has similar expression pattern (mutual information value=1.04768) with  --  AT5G56710
13 AT4G29410  --  has similar expression pattern (mutual information value=0.966439) with  --  PPAN
14 AT4G29410  --  has similar expression pattern (mutual information value=0.957894) with  --  AT2G44860  --  has similar expression pattern (mutual information value=0.823053) with  --  TIM10
15 AT4G29410  --  has similar expression pattern (mutual information value=0.957894) with  --  AT2G44860  --  has similar expression pattern (mutual information value=0.844997) with  --  AT2G20060
16 AT4G29410  --  has similar expression pattern (mutual information value=0.957894) with  --  AT2G44860  --  has similar expression pattern (mutual information value=0.948) with  --  AT1G29250
17 AT4G29410  --  has similar expression pattern (mutual information value=0.957894) with  --  AT2G44860  --  has similar expression pattern (mutual information value=0.895313) with  --  EMB1860; TIM50
18 AT4G29410  --  has similar expression pattern (mutual information value=0.957894) with  --  AT2G44860  --  has similar expression pattern (mutual information value=0.91642) with  --  AT4G28450
19 AT4G29410  --  has similar expression pattern (mutual information value=0.957894) with  --  AT2G44860  --  has similar expression pattern (mutual information value=1.0355) with  --  ROC2
20 AT4G29410  --  has similar expression pattern (mutual information value=0.957894) with  --  AT2G44860  --  has similar expression pattern (mutual information value=0.887961) with  --  AT5G02050
21 AT4G29410  --  has similar expression pattern (mutual information value=0.957894) with  --  AT2G44860  --  has similar expression pattern (mutual information value=0.913349) with  --  TIM8
22 AT4G29410  --  has similar expression pattern (mutual information value=0.957894) with  --  AT2G44860  --  has similar expression pattern (mutual information value=0.874621) with  --  ATFBR1; ATFIB1; FBR1; FIB1; SKIP7
23 AT4G29410  --  has similar expression pattern (mutual information value=0.957894) with  --  AT2G44860  --  has similar expression pattern (mutual information value=1.06758) with  --  AT5G15750
24 AT4G29410  --  has similar expression pattern (mutual information value=0.957894) with  --  AT2G44860  --  has similar expression pattern (mutual information value=0.947154) with  --  ATEBP1; ATG2; EBP1
25 AT4G29410  --  has similar expression pattern (mutual information value=0.957894) with  --  AT2G44860  --  has similar expression pattern (mutual information value=0.899488) with  --  AT2G39795
26 AT4G29410  --  has similar expression pattern (mutual information value=1.04396) with  --  AT2G37990  --  has similar expression pattern (mutual information value=1.02165) with  --  AT2G19750
27 AT4G29410  --  has similar expression pattern (mutual information value=1.04396) with  --  AT2G37990  --  has similar expression pattern (mutual information value=0.856248) with  --  AT2G37400
28 AT4G29410  --  has similar expression pattern (mutual information value=1.04396) with  --  AT2G37990  --  has similar expression pattern (mutual information value=0.830549) with  --  AT1G04590
29 AT4G29410  --  has similar expression pattern (mutual information value=1.04396) with  --  AT2G37990  --  has similar expression pattern (mutual information value=0.953513) with  --  TPR3
30 AT4G29410  --  has similar expression pattern (mutual information value=1.04396) with  --  AT2G37990  --  has similar expression pattern (mutual information value=1.20913) with  --  AT2G28600
31 AT4G29410  --  has similar expression pattern (mutual information value=1.04396) with  --  AT2G37990  --  has similar expression pattern (mutual information value=1.11767) with  --  PPR596
32 AT4G29410  --  has similar expression pattern (mutual information value=1.04396) with  --  AT2G37990  --  has similar expression pattern (mutual information value=0.936368) with  --  AT3G13940
33 AT4G29410  --  has similar expression pattern (mutual information value=1.04396) with  --  AT2G37990  --  has similar expression pattern (mutual information value=0.920806) with  --  AT3G25940
34 AT4G29410  --  has similar expression pattern (mutual information value=1.04396) with  --  AT2G37990  --  has similar expression pattern (mutual information value=1.06638) with  --  AT1G07070
35 AT4G29410  --  has similar expression pattern (mutual information value=1.04396) with  --  AT2G37990  --  has similar expression pattern (mutual information value=0.851457) with  --  STRS1
36 AT4G29410  --  has similar expression pattern (mutual information value=1.04396) with  --  AT2G37990  --  has similar expression pattern (mutual information value=1.04773) with  --  AT3G49080
37 AT4G29410  --  has similar expression pattern (mutual information value=1.04396) with  --  AT2G37990  --  has similar expression pattern (mutual information value=1.24519) with  --  AT3G57490
38 AT4G29410  --  has similar expression pattern (mutual information value=1.04396) with  --  AT2G37990  --  has similar expression pattern (mutual information value=1.03098) with  --  AT3G58700
39 AT4G29410  --  has similar expression pattern (mutual information value=1.04396) with  --  AT2G37990  --  has similar expression pattern (mutual information value=1.00523) with  --  AT5G14050
40 AT4G29410  --  has similar expression pattern (mutual information value=1.1538) with  --  AT1G27400  --  has similar expression pattern (mutual information value=1.14158) with  --  AT2G27710
41 AT4G29410  --  has similar expression pattern (mutual information value=1.1538) with  --  AT1G27400  --  has similar expression pattern (mutual information value=1.10388) with  --  NOP56
42 AT4G29410  --  has similar expression pattern (mutual information value=1.1538) with  --  AT1G27400  --  has similar expression pattern (mutual information value=1.09747) with  --  AT3G04920
43 AT4G29410  --  has similar expression pattern (mutual information value=1.1538) with  --  AT1G27400  --  has similar expression pattern (mutual information value=1.03513) with  --  AT3G10610
44 AT4G29410  --  has similar expression pattern (mutual information value=1.1538) with  --  AT1G27400  --  has similar expression pattern (mutual information value=1.16062) with  --  AtGRP4; GR-RBP4; GRP4
45 AT4G29410  --  has similar expression pattern (mutual information value=1.1538) with  --  AT1G27400  --  has similar expression pattern (mutual information value=0.958612) with  --  ATEIF3E-1; ATINT6; EIF3E; INT-6; INT6; TIF3E1
46 AT4G29410  --  has similar expression pattern (mutual information value=1.1538) with  --  AT1G27400  --  has similar expression pattern (mutual information value=1.09441) with  --  AT2G05220
47 AT4G29410  --  has similar expression pattern (mutual information value=1.1538) with  --  AT1G27400  --  has similar expression pattern (mutual information value=1.09441) with  --  AT5G04800
48 AT4G29410  --  has similar expression pattern (mutual information value=1.1538) with  --  AT1G27400  --  has similar expression pattern (mutual information value=1.09441) with  --  AT2G04390
49 AT4G29410  --  has similar expression pattern (mutual information value=1.1538) with  --  AT1G27400  --  has similar expression pattern (mutual information value=1.1169) with  --  AT4G16720
50 AT4G29410  --  has similar expression pattern (mutual information value=1.27966) with  --  AT1G80750  --  has similar expression pattern (mutual information value=1.04643) with  --  AT2G21580
51 AT4G29410  --  has similar expression pattern (mutual information value=1.27966) with  --  AT1G80750  --  has similar expression pattern (mutual information value=1.06789) with  --  EMB2762
52 AT4G29410  --  has similar expression pattern (mutual information value=1.27966) with  --  AT1G80750  --  has similar expression pattern (mutual information value=1.11796) with  --  AT3G07110
53 AT4G29410  --  has similar expression pattern (mutual information value=1.27966) with  --  AT1G80750  --  has similar expression pattern (mutual information value=1.00743) with  --  RPSAb
54 AT4G29410  --  has similar expression pattern (mutual information value=1.27966) with  --  AT1G80750  --  has similar expression pattern (mutual information value=1.06871) with  --  RPS10
55 AT4G29410  --  has similar expression pattern (mutual information value=1.27966) with  --  AT1G80750  --  has similar expression pattern (mutual information value=0.92467) with  --  PYRB
56 AT4G29410  --  has similar expression pattern (mutual information value=1.27966) with  --  AT1G80750  --  has similar expression pattern (mutual information value=0.880674) with  --  AT.EIF4E1; CUM1; EIF4E; eIF4E1
57 AT4G29410  --  has similar expression pattern (mutual information value=1.27966) with  --  AT1G80750  --  has similar expression pattern (mutual information value=1.03674) with  --  EMB1080
58 AT4G29410  --  has similar expression pattern (mutual information value=1.27966) with  --  AT1G80750  --  has similar expression pattern (mutual information value=1.04173) with  --  AT5G10010
59 AT4G29410  --  has similar expression pattern (mutual information value=0.935448) with  --  DECOY  --  interacts with  --  AT4G05400
60 AT4G29410  --  has similar expression pattern (mutual information value=0.935448) with  --  DECOY  --  has similar expression pattern (mutual information value=0.902512) with  --  AT2G05140
61 AT4G29410  --  has similar expression pattern (mutual information value=0.935448) with  --  DECOY  --  has similar expression pattern (mutual information value=0.902512) with  --  AT2G37690
62 AT4G29410  --  has similar expression pattern (mutual information value=0.935448) with  --  DECOY  --  has similar expression pattern (mutual information value=0.815949) with  --  TIF3I1; TRIP-1
63 AT4G29410  --  has similar expression pattern (mutual information value=0.935448) with  --  DECOY  --  has similar expression pattern (mutual information value=0.815949) with  --  AT2G46290
64 AT4G29410  --  has similar expression pattern (mutual information value=0.935448) with  --  DECOY  --  has similar expression pattern (mutual information value=1.04107) with  --  AT2G36160
65 AT4G29410  --  has similar expression pattern (mutual information value=0.935448) with  --  DECOY  --  has similar expression pattern (mutual information value=1.00733) with  --  AT1G08360
66 AT4G29410  --  has similar expression pattern (mutual information value=0.935448) with  --  DECOY  --  has similar expression pattern (mutual information value=0.975885) with  --  AT1G26740
67 AT4G29410  --  has similar expression pattern (mutual information value=0.935448) with  --  DECOY  --  has similar expression pattern (mutual information value=1.08096) with  --  AT3G01790
68 AT4G29410  --  has similar expression pattern (mutual information value=0.935448) with  --  DECOY  --  has similar expression pattern (mutual information value=0.957337) with  --  AT3G02560
69 AT4G29410  --  has similar expression pattern (mutual information value=0.935448) with  --  DECOY  --  has similar expression pattern (mutual information value=0.93747) with  --  AT3G14600
70 AT4G29410  --  has similar expression pattern (mutual information value=0.935448) with  --  DECOY  --  has similar expression pattern (mutual information value=0.939967) with  --  AT2G33370
71 AT4G29410  --  has similar expression pattern (mutual information value=0.935448) with  --  DECOY  --  has similar expression pattern (mutual information value=0.870513) with  --  AT4G29390
72 AT4G29410  --  has similar expression pattern (mutual information value=0.935448) with  --  DECOY  --  has similar expression pattern (mutual information value=0.910088) with  --  ATPRMT5; PRMT5; SKB1
73 AT4G29410  --  has similar expression pattern (mutual information value=0.935448) with  --  DECOY  --  has similar expression pattern (mutual information value=1.01652) with  --  AT4G35850
74 AT4G29410  --  has similar expression pattern (mutual information value=0.935448) with  --  DECOY  --  has similar expression pattern (mutual information value=0.824621) with  --  ATRAN3; RAN3
75 AT4G29410  --  has similar expression pattern (mutual information value=0.935448) with  --  DECOY  --  has similar expression pattern (mutual information value=0.963029) with  --  AT5G15810
76 AT4G29410  --  has similar expression pattern (mutual information value=1.52948) with  --  AT3G05560  --  interacts with  --  AHL27; ESC; ORE7
77 AT4G29410  --  has similar expression pattern (mutual information value=1.52948) with  --  AT3G05560  --  has similar expression pattern (mutual information value=1.00177) with  --  RPL10; RPL10A; SAC52
78 AT4G29410  --  has similar expression pattern (mutual information value=1.52948) with  --  AT3G05560  --  has similar expression pattern (mutual information value=1.02774) with  --  AT1G74270
79 AT4G29410  --  has similar expression pattern (mutual information value=1.52948) with  --  AT3G05560  --  has similar expression pattern (mutual information value=1.15898) with  --  AT3G23390
80 AT4G29410  --  has similar expression pattern (mutual information value=1.52948) with  --  AT3G05560  --  has similar expression pattern (mutual information value=0.8219) with  --  AT2G34050
81 AT4G29410  --  has similar expression pattern (mutual information value=1.52948) with  --  AT3G05560  --  has similar expression pattern (mutual information value=1.23134) with  --  AT4G25740
82 AT4G29410  --  has similar expression pattern (mutual information value=1.52948) with  --  AT3G05560  --  has similar expression pattern (mutual information value=1.39154) with  --  AT5G03850
83 AT4G29410  --  has similar expression pattern (mutual information value=1.52948) with  --  AT3G05560  --  has similar expression pattern (mutual information value=1.19988) with  --  AT5G52650
84 AT4G29410  --  has similar expression pattern (mutual information value=1.52948) with  --  AT3G05560  --  has similar expression pattern (mutual information value=1.15124) with  --  AT5G09510
85 AT4G29410  --  has similar expression pattern (mutual information value=1.31694) with  --  AT3G06680  --  has similar expression pattern (mutual information value=0.926681) with  --  AT2G43460
86 AT4G29410  --  has similar expression pattern (mutual information value=1.31694) with  --  AT3G06680  --  has similar expression pattern (mutual information value=0.977558) with  --  AT2G40510
87 AT4G29410  --  has similar expression pattern (mutual information value=1.31694) with  --  AT3G06680  --  has similar expression pattern (mutual information value=0.977558) with  --  AT2G40590
88 AT4G29410  --  has similar expression pattern (mutual information value=1.31694) with  --  AT3G06680  --  has similar expression pattern (mutual information value=0.813809) with  --  AT5G62440
89 AT4G29410  --  has similar expression pattern (mutual information value=1.19185) with  --  AT3G44590  --  interacts with  --  emb2004
90 AT4G29410  --  has similar expression pattern (mutual information value=1.19185) with  --  AT3G44590  --  interacts with  --  AT1G55880
91 AT4G29410  --  has similar expression pattern (mutual information value=1.19185) with  --  AT3G44590  --  interacts with  --  AT1G01100
92 AT4G29410  --  has similar expression pattern (mutual information value=1.19185) with  --  AT3G44590  --  interacts with  --  GASA5
93 AT4G29410  --  has similar expression pattern (mutual information value=1.19185) with  --  AT3G44590  --  has similar expression pattern (mutual information value=0.906432) with  --  RPL10B
94 AT4G29410  --  has similar expression pattern (mutual information value=1.19185) with  --  AT3G44590  --  has similar expression pattern (mutual information value=0.938729) with  --  AT2G41840
95 AT4G29410  --  has similar expression pattern (mutual information value=1.19185) with  --  AT3G44590  --  has similar expression pattern (mutual information value=1.02939) with  --  AT3G22230
96 AT4G29410  --  has similar expression pattern (mutual information value=1.19185) with  --  AT3G44590  --  has similar expression pattern (mutual information value=1.3038) with  --  AT5G02450
97 AT4G29410  --  has similar expression pattern (mutual information value=1.19185) with  --  AT3G44590  --  has similar expression pattern (mutual information value=1.27414) with  --  AT5G58420
98 AT4G29410  --  has similar expression pattern (mutual information value=1.19185) with  --  AT3G44590  --  has similar expression pattern (mutual information value=1.41628) with  --  AT5G59850
99 AT4G29410  --  has similar expression pattern (mutual information value=1.19185) with  --  AT3G44590  --  has similar expression pattern (mutual information value=1.35723) with  --  AT5G60670
100 AT4G29410  --  has similar expression pattern (mutual information value=0.870655) with  --  EIF(ISO)4E; EIF4E2; eIFiso4E; LSP; LSP1  --  interacts with  --  eIFiso4G1
101 AT4G29410  --  has similar expression pattern (mutual information value=0.870655) with  --  EIF(ISO)4E; EIF4E2; eIFiso4E; LSP; LSP1  --  interacts with  --  eIFiso4G2
102 AT4G29410  --  has similar expression pattern (mutual information value=0.870655) with  --  EIF(ISO)4E; EIF4E2; eIFiso4E; LSP; LSP1  --  has similar expression pattern (mutual information value=0.831531) with  --  AT2G18330
103 AT4G29410  --  has similar expression pattern (mutual information value=1.04768) with  --  AT5G56710  --  has similar expression pattern (mutual information value=0.82155) with  --  SNRNP-G
104 AT4G29410  --  has similar expression pattern (mutual information value=1.04768) with  --  AT5G56710  --  has similar expression pattern (mutual information value=1.0062) with  --  AT2G18400
105 AT4G29410  --  has similar expression pattern (mutual information value=1.04768) with  --  AT5G56710  --  has similar expression pattern (mutual information value=0.931986) with  --  AT1G09590
106 AT4G29410  --  has similar expression pattern (mutual information value=1.04768) with  --  AT5G56710  --  has similar expression pattern (mutual information value=0.931986) with  --  AT1G09690
107 AT4G29410  --  has similar expression pattern (mutual information value=1.04768) with  --  AT5G56710  --  has similar expression pattern (mutual information value=0.935723) with  --  AT1G73940
108 AT4G29410  --  has similar expression pattern (mutual information value=1.04768) with  --  AT5G56710  --  has similar expression pattern (mutual information value=0.994852) with  --  AT3G06700
109 AT4G29410  --  has similar expression pattern (mutual information value=1.04768) with  --  AT5G56710  --  has similar expression pattern (mutual information value=1.07118) with  --  AT3G16080
110 AT4G29410  --  has similar expression pattern (mutual information value=1.04768) with  --  AT5G56710  --  has similar expression pattern (mutual information value=0.973811) with  --  AT3G60245
111 AT4G29410  --  has similar expression pattern (mutual information value=0.966439) with  --  PPAN  --  has similar expression pattern (mutual information value=0.869501) with  --  AT5G60990
   Funding by the National Science Foundation    Funding by the Oklahoma Center for the Advancement of Science & Technology    Additional funding by the Samuel Roberts Noble Foundation

Copyright © The Zhao Lab

Disclaimer | Contact