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A Graph Search-Empowered Integrative Database of Arabidopsis Signaling Transduction, Metabolism and Gene Regulation Networks   
Location:  Home > Details for node AT3G02560
Type: Protein GRN ID: np27660 Name:
Annotation: Ribosomal protein S7e family protein
Gene Locus: AT3G02560
Gene Expression (Affy ATH1 probeset): 258486_at    
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 Protein modification
 Protein-protein interaction
        also include predicted relationship
 Compound-protein interaction
 TF-target gene regulation
 Small RNA-target regulation
        also include predicted relationship
 Carrier and transported molecule
 Catalytic chemical reaction
 Co-expressed gene pair
        with mutual information value >

  Ignore nodes having > relationships
 
Relationship type:  protein modification     catalytic chemical reaction     protein-protein interaction    
compound-protein interaction     TF-target gene regulation     small RNA-target regulation    
co-expressed gene pair     carrier and transported molecule     family/complex and member
Relationship evidence:  Solid line: validated          Dashed line: predicted
Relationship direction: Arrow: positive          T shape: negative          None arrow: unknown or n/a
Hormone association: Thicker line: hormone related relationship         : hormone related Node
Node type:  Transcription factor or transcriptional regulator       Compound       Kinase
 Small regulatory RNA (miRNA & ta-siRNA)       Other nodes
No. Path
2 AT3G02560  --  has similar expression pattern (mutual information value=1.01672) with  --  AML1; ATRPS5A; RPS5A
3 AT3G02560  --  has similar expression pattern (mutual information value=1.0722) with  --  AT2G37190
4 AT3G02560  --  has similar expression pattern (mutual information value=1.03141) with  --  AT2G36160
5 AT3G02560  --  has similar expression pattern (mutual information value=0.903368) with  --  emb2386
6 AT3G02560  --  has similar expression pattern (mutual information value=0.957337) with  --  DECOY
7 AT3G02560  --  has similar expression pattern (mutual information value=1.10963) with  --  AT2G41840
8 AT3G02560  --  has similar expression pattern (mutual information value=0.952995) with  --  AT3G01790
9 AT3G02560  --  has similar expression pattern (mutual information value=0.830339) with  --  AT3G02080
10 AT3G02560  --  has similar expression pattern (mutual information value=1.02138) with  --  AT3G14600
11 AT3G02560  --  has similar expression pattern (mutual information value=0.993636) with  --  AT3G45030
12 AT3G02560  --  has similar expression pattern (mutual information value=0.950252) with  --  ATEIF3E-1; ATINT6; EIF3E; INT-6; INT6; TIF3E1
13 AT3G02560  --  has similar expression pattern (mutual information value=0.837283) with  --  AT5G06360
14 AT3G02560  --  has similar expression pattern (mutual information value=1.08734) with  --  EMB3010; RPS6B
15 AT3G02560  --  has similar expression pattern (mutual information value=1.03371) with  --  AT5G23900
16 AT3G02560  --  has similar expression pattern (mutual information value=0.992743) with  --  AT5G52650
17 AT3G02560  --  has similar expression pattern (mutual information value=0.8491) with  --  ATRAN3; RAN3
18 AT3G02560  --  has similar expression pattern (mutual information value=1.13099) with  --  AT5G19510
19 AT3G02560  --  has similar expression pattern (mutual information value=1.01672) with  --  AML1; ATRPS5A; RPS5A  --  has similar expression pattern (mutual information value=0.93555) with  --  PGY1
20 AT3G02560  --  has similar expression pattern (mutual information value=1.01672) with  --  AML1; ATRPS5A; RPS5A  --  has similar expression pattern (mutual information value=0.91306) with  --  AT1G63660
21 AT3G02560  --  has similar expression pattern (mutual information value=1.01672) with  --  AML1; ATRPS5A; RPS5A  --  has similar expression pattern (mutual information value=0.896423) with  --  AT3G03920
22 AT3G02560  --  has similar expression pattern (mutual information value=1.01672) with  --  AML1; ATRPS5A; RPS5A  --  has similar expression pattern (mutual information value=0.840123) with  --  AT4G10320
23 AT3G02560  --  has similar expression pattern (mutual information value=1.01672) with  --  AML1; ATRPS5A; RPS5A  --  has similar expression pattern (mutual information value=1.18385) with  --  RPL24; RPL24B; STV1
24 AT3G02560  --  has similar expression pattern (mutual information value=1.01672) with  --  AML1; ATRPS5A; RPS5A  --  has similar expression pattern (mutual information value=0.870094) with  --  AT5G02870
25 AT3G02560  --  has similar expression pattern (mutual information value=1.01672) with  --  AML1; ATRPS5A; RPS5A  --  has similar expression pattern (mutual information value=1.10502) with  --  AT5G27850
26 AT3G02560  --  has similar expression pattern (mutual information value=1.01672) with  --  AML1; ATRPS5A; RPS5A  --  has similar expression pattern (mutual information value=0.966508) with  --  AT4G17390
27 AT3G02560  --  has similar expression pattern (mutual information value=1.0722) with  --  AT2G37190  --  interacts with  --  ATSYP23; SYP23
28 AT3G02560  --  has similar expression pattern (mutual information value=1.0722) with  --  AT2G37190  --  interacts with  --  AT1G18660
29 AT3G02560  --  has similar expression pattern (mutual information value=1.0722) with  --  AT2G37190  --  has similar expression pattern (mutual information value=1.05826) with  --  AteIF3f; EIF2; eIF3F
30 AT3G02560  --  has similar expression pattern (mutual information value=1.0722) with  --  AT2G37190  --  has similar expression pattern (mutual information value=0.873027) with  --  TIF3I1; TRIP-1
31 AT3G02560  --  has similar expression pattern (mutual information value=1.0722) with  --  AT2G37190  --  has similar expression pattern (mutual information value=0.873027) with  --  AT2G46290
32 AT3G02560  --  has similar expression pattern (mutual information value=1.0722) with  --  AT2G37190  --  has similar expression pattern (mutual information value=0.911012) with  --  AT5G18380
33 AT3G02560  --  has similar expression pattern (mutual information value=1.0722) with  --  AT2G37190  --  has similar expression pattern (mutual information value=1.12172) with  --  EDA27; NOP10
34 AT3G02560  --  has similar expression pattern (mutual information value=1.0722) with  --  AT2G37190  --  has similar expression pattern (mutual information value=1.00118) with  --  AT1G01100
35 AT3G02560  --  has similar expression pattern (mutual information value=1.0722) with  --  AT2G37190  --  has similar expression pattern (mutual information value=0.87851) with  --  AT1G74050
36 AT3G02560  --  has similar expression pattern (mutual information value=1.0722) with  --  AT2G37190  --  has similar expression pattern (mutual information value=1.15406) with  --  AT3G07110
37 AT3G02560  --  has similar expression pattern (mutual information value=1.0722) with  --  AT2G37190  --  has similar expression pattern (mutual information value=0.993173) with  --  AtGRP4; GR-RBP4; GRP4
38 AT3G02560  --  has similar expression pattern (mutual information value=1.0722) with  --  AT2G37190  --  has similar expression pattern (mutual information value=1.10844) with  --  AT2G33370
39 AT3G02560  --  has similar expression pattern (mutual information value=1.0722) with  --  AT2G37190  --  has similar expression pattern (mutual information value=0.934174) with  --  AT5G27700
40 AT3G02560  --  has similar expression pattern (mutual information value=1.03141) with  --  AT2G36160  --  has similar expression pattern (mutual information value=0.819791) with  --  AT2G05140
41 AT3G02560  --  has similar expression pattern (mutual information value=1.03141) with  --  AT2G36160  --  has similar expression pattern (mutual information value=0.819791) with  --  AT2G37690
42 AT3G02560  --  has similar expression pattern (mutual information value=1.03141) with  --  AT2G36160  --  has similar expression pattern (mutual information value=1.14157) with  --  AT1G26740
43 AT3G02560  --  has similar expression pattern (mutual information value=1.03141) with  --  AT2G36160  --  has similar expression pattern (mutual information value=0.863467) with  --  ATPRMT5; PRMT5; SKB1
44 AT3G02560  --  has similar expression pattern (mutual information value=0.903368) with  --  emb2386  --  interacts with  --  TGA1
45 AT3G02560  --  has similar expression pattern (mutual information value=0.903368) with  --  emb2386  --  has similar expression pattern (mutual information value=0.870423) with  --  ATL5; OLI5; PGY3; RPL5A
46 AT3G02560  --  has similar expression pattern (mutual information value=0.903368) with  --  emb2386  --  has similar expression pattern (mutual information value=0.950264) with  --  AT4G16720
47 AT3G02560  --  has similar expression pattern (mutual information value=0.957337) with  --  DECOY  --  interacts with  --  AT4G05400
48 AT3G02560  --  has similar expression pattern (mutual information value=0.957337) with  --  DECOY  --  has similar expression pattern (mutual information value=0.977832) with  --  AT2G20060
49 AT3G02560  --  has similar expression pattern (mutual information value=0.957337) with  --  DECOY  --  has similar expression pattern (mutual information value=1.00733) with  --  AT1G08360
50 AT3G02560  --  has similar expression pattern (mutual information value=0.957337) with  --  DECOY  --  has similar expression pattern (mutual information value=0.942524) with  --  AT3G05560
51 AT3G02560  --  has similar expression pattern (mutual information value=0.957337) with  --  DECOY  --  has similar expression pattern (mutual information value=0.883064) with  --  AT3G23620
52 AT3G02560  --  has similar expression pattern (mutual information value=0.957337) with  --  DECOY  --  has similar expression pattern (mutual information value=0.935448) with  --  AT4G29410
53 AT3G02560  --  has similar expression pattern (mutual information value=0.957337) with  --  DECOY  --  has similar expression pattern (mutual information value=0.870513) with  --  AT4G29390
54 AT3G02560  --  has similar expression pattern (mutual information value=0.957337) with  --  DECOY  --  has similar expression pattern (mutual information value=1.01652) with  --  AT4G35850
55 AT3G02560  --  has similar expression pattern (mutual information value=0.957337) with  --  DECOY  --  has similar expression pattern (mutual information value=0.858859) with  --  ROC2
56 AT3G02560  --  has similar expression pattern (mutual information value=0.957337) with  --  DECOY  --  has similar expression pattern (mutual information value=0.963029) with  --  AT5G15810
57 AT3G02560  --  has similar expression pattern (mutual information value=0.957337) with  --  DECOY  --  has similar expression pattern (mutual information value=0.888339) with  --  ATEBP1; ATG2; EBP1
58 AT3G02560  --  has similar expression pattern (mutual information value=0.957337) with  --  DECOY  --  has similar expression pattern (mutual information value=0.930252) with  --  AT2G39795
59 AT3G02560  --  has similar expression pattern (mutual information value=1.10963) with  --  AT2G41840  --  interacts with  --  AT4G02220
60 AT3G02560  --  has similar expression pattern (mutual information value=1.10963) with  --  AT2G41840  --  has similar expression pattern (mutual information value=0.938729) with  --  AT3G44590
61 AT3G02560  --  has similar expression pattern (mutual information value=1.10963) with  --  AT2G41840  --  has similar expression pattern (mutual information value=0.854242) with  --  AT5G02450
62 AT3G02560  --  has similar expression pattern (mutual information value=0.952995) with  --  AT3G01790  --  has similar expression pattern (mutual information value=0.984733) with  --  AT2G35790
63 AT3G02560  --  has similar expression pattern (mutual information value=0.952995) with  --  AT3G01790  --  has similar expression pattern (mutual information value=1.02107) with  --  TOM6
64 AT3G02560  --  has similar expression pattern (mutual information value=0.952995) with  --  AT3G01790  --  has similar expression pattern (mutual information value=0.893938) with  --  AT1G80620
65 AT3G02560  --  has similar expression pattern (mutual information value=0.952995) with  --  AT3G01790  --  has similar expression pattern (mutual information value=1.03977) with  --  AT3G51010
66 AT3G02560  --  has similar expression pattern (mutual information value=0.952995) with  --  AT3G01790  --  has similar expression pattern (mutual information value=0.894128) with  --  RRP41
67 AT3G02560  --  has similar expression pattern (mutual information value=0.952995) with  --  AT3G01790  --  has similar expression pattern (mutual information value=0.864852) with  --  AT5G14050
68 AT3G02560  --  has similar expression pattern (mutual information value=0.952995) with  --  AT3G01790  --  has similar expression pattern (mutual information value=1.06152) with  --  AT5G47930
69 AT3G02560  --  has similar expression pattern (mutual information value=0.830339) with  --  AT3G02080  --  has similar expression pattern (mutual information value=0.811939) with  --  ATTIF3K1; EIF3K; TIF3K1
70 AT3G02560  --  has similar expression pattern (mutual information value=0.830339) with  --  AT3G02080  --  has similar expression pattern (mutual information value=0.800395) with  --  CLPP2; NCLPP7
71 AT3G02560  --  has similar expression pattern (mutual information value=1.02138) with  --  AT3G14600  --  has similar expression pattern (mutual information value=0.877926) with  --  AT5G35530
72 AT3G02560  --  has similar expression pattern (mutual information value=0.993636) with  --  AT3G45030  --  has similar expression pattern (mutual information value=1.05834) with  --  AT1G26880
73 AT3G02560  --  has similar expression pattern (mutual information value=0.993636) with  --  AT3G45030  --  has similar expression pattern (mutual information value=0.981716) with  --  RPL27A; RPL27AB
74 AT3G02560  --  has similar expression pattern (mutual information value=0.993636) with  --  AT3G45030  --  has similar expression pattern (mutual information value=1.20858) with  --  AP40; P40; RP40; RPSAA
75 AT3G02560  --  has similar expression pattern (mutual information value=0.993636) with  --  AT3G45030  --  has similar expression pattern (mutual information value=0.994444) with  --  AT1G73230
76 AT3G02560  --  has similar expression pattern (mutual information value=0.993636) with  --  AT3G45030  --  has similar expression pattern (mutual information value=0.994198) with  --  AT3G04920
77 AT3G02560  --  has similar expression pattern (mutual information value=0.993636) with  --  AT3G45030  --  has similar expression pattern (mutual information value=0.907153) with  --  AT3G13230
78 AT3G02560  --  has similar expression pattern (mutual information value=0.993636) with  --  AT3G45030  --  has similar expression pattern (mutual information value=1.01326) with  --  AT5G48760
79 AT3G02560  --  has similar expression pattern (mutual information value=0.950252) with  --  ATEIF3E-1; ATINT6; EIF3E; INT-6; INT6; TIF3E1  --  interacts with  --  ATCSN7; COP15; CSN7; FUS5
80 AT3G02560  --  has similar expression pattern (mutual information value=0.950252) with  --  ATEIF3E-1; ATINT6; EIF3E; INT-6; INT6; TIF3E1  --  interacts with  --  ATEIF3C-1; ATTIF3C1; EIF3C; EIF3C-1; TIF3C1
81 AT3G02560  --  has similar expression pattern (mutual information value=0.950252) with  --  ATEIF3E-1; ATINT6; EIF3E; INT-6; INT6; TIF3E1  --  has similar expression pattern (mutual information value=0.958612) with  --  AT1G27400
82 AT3G02560  --  has similar expression pattern (mutual information value=0.950252) with  --  ATEIF3E-1; ATINT6; EIF3E; INT-6; INT6; TIF3E1  --  has similar expression pattern (mutual information value=0.963824) with  --  AT3G10610
83 AT3G02560  --  has similar expression pattern (mutual information value=0.950252) with  --  ATEIF3E-1; ATINT6; EIF3E; INT-6; INT6; TIF3E1  --  has similar expression pattern (mutual information value=0.957425) with  --  RPS6; RPS6A
84 AT3G02560  --  has similar expression pattern (mutual information value=0.950252) with  --  ATEIF3E-1; ATINT6; EIF3E; INT-6; INT6; TIF3E1  --  has similar expression pattern (mutual information value=0.910013) with  --  ATFUS6; ATSK31; COP11; CSN1; EMB78; FUS6; SK31
85 AT3G02560  --  has similar expression pattern (mutual information value=0.950252) with  --  ATEIF3E-1; ATINT6; EIF3E; INT-6; INT6; TIF3E1  --  has similar expression pattern (mutual information value=0.988494) with  --  DegP9
86 AT3G02560  --  has similar expression pattern (mutual information value=0.950252) with  --  ATEIF3E-1; ATINT6; EIF3E; INT-6; INT6; TIF3E1  --  has similar expression pattern (mutual information value=0.811235) with  --  OVA9
87 AT3G02560  --  has similar expression pattern (mutual information value=0.837283) with  --  AT5G06360  --  has similar expression pattern (mutual information value=0.816554) with  --  AT1G15420
88 AT3G02560  --  has similar expression pattern (mutual information value=0.837283) with  --  AT5G06360  --  has similar expression pattern (mutual information value=1.19447) with  --  AT1G02870
89 AT3G02560  --  has similar expression pattern (mutual information value=0.837283) with  --  AT5G06360  --  has similar expression pattern (mutual information value=0.886066) with  --  EMB2811; RFC2
90 AT3G02560  --  has similar expression pattern (mutual information value=0.837283) with  --  AT5G06360  --  has similar expression pattern (mutual information value=1.09354) with  --  AT1G20430
91 AT3G02560  --  has similar expression pattern (mutual information value=0.837283) with  --  AT5G06360  --  has similar expression pattern (mutual information value=0.812334) with  --  AT4G20020
92 AT3G02560  --  has similar expression pattern (mutual information value=0.837283) with  --  AT5G06360  --  has similar expression pattern (mutual information value=0.961865) with  --  AT3G58470
93 AT3G02560  --  has similar expression pattern (mutual information value=0.837283) with  --  AT5G06360  --  has similar expression pattern (mutual information value=0.949243) with  --  AT5G39850
94 AT3G02560  --  has similar expression pattern (mutual information value=0.837283) with  --  AT5G06360  --  has similar expression pattern (mutual information value=0.840391) with  --  AT4G14000
95 AT3G02560  --  has similar expression pattern (mutual information value=0.837283) with  --  AT5G06360  --  has similar expression pattern (mutual information value=0.850901) with  --  DIM1A
96 AT3G02560  --  has similar expression pattern (mutual information value=1.08734) with  --  EMB3010; RPS6B  --  interacts with  --  NAP1;3; NFA03; NFA3
97 AT3G02560  --  has similar expression pattern (mutual information value=1.08734) with  --  EMB3010; RPS6B  --  interacts with  --  AtMC9; AtMCP2f; MC9; MCP2f
98 AT3G02560  --  has similar expression pattern (mutual information value=1.08734) with  --  EMB3010; RPS6B  --  interacts with  --  ATNAP1;1; NAP1;1
99 AT3G02560  --  has similar expression pattern (mutual information value=1.08734) with  --  EMB3010; RPS6B  --  has similar expression pattern (mutual information value=1.02122) with  --  AT1G15930
100 AT3G02560  --  has similar expression pattern (mutual information value=1.08734) with  --  EMB3010; RPS6B  --  has similar expression pattern (mutual information value=0.829383) with  --  AT5G27470
101 AT3G02560  --  has similar expression pattern (mutual information value=1.03371) with  --  AT5G23900  --  has similar expression pattern (mutual information value=0.803263) with  --  RPS18C
102 AT3G02560  --  has similar expression pattern (mutual information value=0.992743) with  --  AT5G52650  --  interacts with  --  ATWRKY60; WRKY60
103 AT3G02560  --  has similar expression pattern (mutual information value=0.992743) with  --  AT5G52650  --  interacts with  --  AT4G32190
104 AT3G02560  --  has similar expression pattern (mutual information value=0.992743) with  --  AT5G52650  --  interacts with  --  AT4G23050
105 AT3G02560  --  has similar expression pattern (mutual information value=0.992743) with  --  AT5G52650  --  interacts with  --  AT1G01800
106 AT3G02560  --  has similar expression pattern (mutual information value=0.992743) with  --  AT5G52650  --  has similar expression pattern (mutual information value=1.12283) with  --  RPS15
107 AT3G02560  --  has similar expression pattern (mutual information value=0.992743) with  --  AT5G52650  --  has similar expression pattern (mutual information value=1.1921) with  --  NOP56
108 AT3G02560  --  has similar expression pattern (mutual information value=0.992743) with  --  AT5G52650  --  has similar expression pattern (mutual information value=1.19815) with  --  AT3G11250
109 AT3G02560  --  has similar expression pattern (mutual information value=0.992743) with  --  AT5G52650  --  has similar expression pattern (mutual information value=1.18387) with  --  AT4G12600
110 AT3G02560  --  has similar expression pattern (mutual information value=0.992743) with  --  AT5G52650  --  has similar expression pattern (mutual information value=1.16807) with  --  AT4G25740
111 AT3G02560  --  has similar expression pattern (mutual information value=0.8491) with  --  ATRAN3; RAN3  --  interacts with  --  SIRANBP
112 AT3G02560  --  has similar expression pattern (mutual information value=0.8491) with  --  ATRAN3; RAN3  --  interacts with  --  AT2G30060
113 AT3G02560  --  has similar expression pattern (mutual information value=0.8491) with  --  ATRAN3; RAN3  --  has similar expression pattern (mutual information value=0.933047) with  --  AT4G36130
114 AT3G02560  --  has similar expression pattern (mutual information value=0.8491) with  --  ATRAN3; RAN3  --  has similar expression pattern (mutual information value=0.916929) with  --  AT2G42910
115 AT3G02560  --  has similar expression pattern (mutual information value=1.13099) with  --  AT5G19510  --  interacts with  --  CERK1; LYSM RLK1
   Funding by the National Science Foundation    Funding by the Oklahoma Center for the Advancement of Science & Technology    Additional funding by the Samuel Roberts Noble Foundation

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