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A Graph Search-Empowered Integrative Database of Arabidopsis Signaling Transduction, Metabolism and Gene Regulation Networks   
Location:  Home > Details for node AT3G53890
Type: Protein GRN ID: np24604 Name:
Annotation: Ribosomal protein S21e
Gene Locus: AT3G53890
Gene Expression (Affy ATH1 probeset): 251921_at    
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 Protein modification
 Protein-protein interaction
        also include predicted relationship
 Compound-protein interaction
 TF-target gene regulation
 Small RNA-target regulation
        also include predicted relationship
 Carrier and transported molecule
 Catalytic chemical reaction
 Co-expressed gene pair
        with mutual information value >

  Ignore nodes having > relationships
 
Relationship type:  protein modification     catalytic chemical reaction     protein-protein interaction    
compound-protein interaction     TF-target gene regulation     small RNA-target regulation    
co-expressed gene pair     carrier and transported molecule     family/complex and member
Relationship evidence:  Solid line: validated          Dashed line: predicted
Relationship direction: Arrow: positive          T shape: negative          None arrow: unknown or n/a
Hormone association: Thicker line: hormone related relationship         : hormone related Node
Node type:  Transcription factor or transcriptional regulator       Compound       Kinase
 Small regulatory RNA (miRNA & ta-siRNA)       Other nodes
No. Path
2 AT3G53890  --  interacts with  --  AT1G63480
3 AT3G53890  --  interacts with  --  AP40; P40; RP40; RPSAA
4 AT3G53890  --  has similar expression pattern (mutual information value=0.900858) with  --  HTB1
5 AT3G53890  --  has similar expression pattern (mutual information value=1.24848) with  --  AT3G55750
6 AT3G53890  --  has similar expression pattern (mutual information value=1.24848) with  --  AT1G41880
7 AT3G53890  --  has similar expression pattern (mutual information value=1.23906) with  --  AT3G09500
8 AT3G53890  --  has similar expression pattern (mutual information value=1.12445) with  --  AT3G22230
9 AT3G53890  --  has similar expression pattern (mutual information value=1.2761) with  --  AT1G34030
10 AT3G53890  --  has similar expression pattern (mutual information value=0.913999) with  --  AT4G02840
11 AT3G53890  --  has similar expression pattern (mutual information value=1.49304) with  --  AT3G43980
12 AT3G53890  --  has similar expression pattern (mutual information value=1.49304) with  --  AT3G44010
13 AT3G53890  --  has similar expression pattern (mutual information value=1.02849) with  --  PAD1
14 AT3G53890  --  has similar expression pattern (mutual information value=1.41059) with  --  AT3G56340
15 AT3G53890  --  interacts with  --  AT1G63480  --  interacts with  --  UKL2
16 AT3G53890  --  interacts with  --  AT1G63480  --  interacts with  --  anac081; ATAF2
17 AT3G53890  --  interacts with  --  AT1G63480  --  interacts with  --  AT1G68680
18 AT3G53890  --  interacts with  --  AT1G63480  --  interacts with  --  PRXR1
19 AT3G53890  --  interacts with  --  AT1G63480  --  interacts with  --  PFN2; PRF2; PRO2
20 AT3G53890  --  interacts with  --  AT1G63480  --  interacts with  --  AXS1
21 AT3G53890  --  interacts with  --  AT1G63480  --  interacts with  --  ATHVA22D; HVA22D
22 AT3G53890  --  interacts with  --  AT1G63480  --  interacts with  --  ATEIF3G1; EIF3G1
23 AT3G53890  --  interacts with  --  AT1G63480  --  interacts with  --  AT3G53730
24 AT3G53890  --  interacts with  --  AT1G63480  --  interacts with  --  AT4G14342
25 AT3G53890  --  interacts with  --  AT1G63480  --  interacts with  --  AT5G10830
26 AT3G53890  --  interacts with  --  AT1G63480  --  interacts with  --  EMB2296
27 AT3G53890  --  interacts with  --  AT1G63480  --  interacts with  --  AT5G57890
28 AT3G53890  --  interacts with  --  AT1G63480  --  interacts with  --  AT3G61310
29 AT3G53890  --  interacts with  --  AT1G63480  --  interacts with  --  PFN3; PRF3
30 AT3G53890  --  interacts with  --  AT1G63480  --  interacts with  --  AHL27; ESC; ORE7
31 AT3G53890  --  interacts with  --  AP40; P40; RP40; RPSAA  --  interacts with  --  AtMC9; AtMCP2f; MC9; MCP2f
32 AT3G53890  --  interacts with  --  AP40; P40; RP40; RPSAA  --  has similar expression pattern (mutual information value=1.08533) with  --  NOP56
33 AT3G53890  --  interacts with  --  AP40; P40; RP40; RPSAA  --  has similar expression pattern (mutual information value=1.07488) with  --  AT1G55890
34 AT3G53890  --  interacts with  --  AP40; P40; RP40; RPSAA  --  has similar expression pattern (mutual information value=0.919997) with  --  NRP1
35 AT3G53890  --  interacts with  --  AP40; P40; RP40; RPSAA  --  has similar expression pattern (mutual information value=1.15584) with  --  AT3G07110
36 AT3G53890  --  interacts with  --  AP40; P40; RP40; RPSAA  --  has similar expression pattern (mutual information value=0.926733) with  --  emb2171
37 AT3G53890  --  interacts with  --  AP40; P40; RP40; RPSAA  --  has similar expression pattern (mutual information value=0.914241) with  --  AT3G13230
38 AT3G53890  --  interacts with  --  AP40; P40; RP40; RPSAA  --  has similar expression pattern (mutual information value=1.1507) with  --  AT3G11250
39 AT3G53890  --  interacts with  --  AP40; P40; RP40; RPSAA  --  has similar expression pattern (mutual information value=0.8825) with  --  smB
40 AT3G53890  --  interacts with  --  AP40; P40; RP40; RPSAA  --  has similar expression pattern (mutual information value=1.11659) with  --  HAP6
41 AT3G53890  --  interacts with  --  AP40; P40; RP40; RPSAA  --  has similar expression pattern (mutual information value=1.20858) with  --  AT3G45030
42 AT3G53890  --  interacts with  --  AP40; P40; RP40; RPSAA  --  has similar expression pattern (mutual information value=0.964204) with  --  AT5G48760
43 AT3G53890  --  interacts with  --  AP40; P40; RP40; RPSAA  --  has similar expression pattern (mutual information value=0.800792) with  --  AT5G27120
44 AT3G53890  --  interacts with  --  AP40; P40; RP40; RPSAA  --  has similar expression pattern (mutual information value=0.800792) with  --  AT5G27140
45 AT3G53890  --  has similar expression pattern (mutual information value=0.900858) with  --  HTB1  --  has similar expression pattern (mutual information value=0.921146) with  --  RPL34
46 AT3G53890  --  has similar expression pattern (mutual information value=0.900858) with  --  HTB1  --  has similar expression pattern (mutual information value=0.842078) with  --  BUB3.1
47 AT3G53890  --  has similar expression pattern (mutual information value=0.900858) with  --  HTB1  --  has similar expression pattern (mutual information value=0.893604) with  --  TOM5
48 AT3G53890  --  has similar expression pattern (mutual information value=1.24848) with  --  AT3G55750  --  has similar expression pattern (mutual information value=1.17983) with  --  AT4G36130
49 AT3G53890  --  has similar expression pattern (mutual information value=1.24848) with  --  AT3G55750  --  has similar expression pattern (mutual information value=1.0365) with  --  AT1G52930
50 AT3G53890  --  has similar expression pattern (mutual information value=1.24848) with  --  AT3G55750  --  has similar expression pattern (mutual information value=0.97983) with  --  AT3G13160
51 AT3G53890  --  has similar expression pattern (mutual information value=1.24848) with  --  AT3G55750  --  has similar expression pattern (mutual information value=1.24248) with  --  EMB1080
52 AT3G53890  --  has similar expression pattern (mutual information value=1.24848) with  --  AT3G55750  --  has similar expression pattern (mutual information value=1.35824) with  --  RPL24; RPL24B; STV1
53 AT3G53890  --  has similar expression pattern (mutual information value=1.24848) with  --  AT3G55750  --  has similar expression pattern (mutual information value=1.05032) with  --  AT1G58983
54 AT3G53890  --  has similar expression pattern (mutual information value=1.24848) with  --  AT3G55750  --  has similar expression pattern (mutual information value=1.05032) with  --  AT1G59359
55 AT3G53890  --  has similar expression pattern (mutual information value=1.24848) with  --  AT3G55750  --  has similar expression pattern (mutual information value=1.05032) with  --  AT1G58684
56 AT3G53890  --  has similar expression pattern (mutual information value=1.24848) with  --  AT3G55750  --  has similar expression pattern (mutual information value=1.05032) with  --  XW6
57 AT3G53890  --  has similar expression pattern (mutual information value=1.23906) with  --  AT3G09500  --  has similar expression pattern (mutual information value=1.1364) with  --  AT1G08360
58 AT3G53890  --  has similar expression pattern (mutual information value=1.23906) with  --  AT3G09500  --  has similar expression pattern (mutual information value=1.0537) with  --  AT1G29250
59 AT3G53890  --  has similar expression pattern (mutual information value=1.23906) with  --  AT3G09500  --  has similar expression pattern (mutual information value=0.871897) with  --  AT1G20430
60 AT3G53890  --  has similar expression pattern (mutual information value=1.23906) with  --  AT3G09500  --  has similar expression pattern (mutual information value=0.863722) with  --  RPS18C
61 AT3G53890  --  has similar expression pattern (mutual information value=1.23906) with  --  AT3G09500  --  has similar expression pattern (mutual information value=1.22918) with  --  AT3G60770
62 AT3G53890  --  has similar expression pattern (mutual information value=1.23906) with  --  AT3G09500  --  has similar expression pattern (mutual information value=1.0284) with  --  ATTOM22-V; TOM22-V; TOM9-2
63 AT3G53890  --  has similar expression pattern (mutual information value=1.12445) with  --  AT3G22230  --  has similar expression pattern (mutual information value=1.05345) with  --  ATRPL23A; RPL23A; RPL23AA
64 AT3G53890  --  has similar expression pattern (mutual information value=1.12445) with  --  AT3G22230  --  has similar expression pattern (mutual information value=1.01097) with  --  AT2G19750
65 AT3G53890  --  has similar expression pattern (mutual information value=1.12445) with  --  AT3G22230  --  has similar expression pattern (mutual information value=1.31116) with  --  AT1G26880
66 AT3G53890  --  has similar expression pattern (mutual information value=1.12445) with  --  AT3G22230  --  has similar expression pattern (mutual information value=1.2661) with  --  AT1G70600
67 AT3G53890  --  has similar expression pattern (mutual information value=1.12445) with  --  AT3G22230  --  has similar expression pattern (mutual information value=1.2661) with  --  RPL27A; RPL27AB
68 AT3G53890  --  has similar expression pattern (mutual information value=1.12445) with  --  AT3G22230  --  has similar expression pattern (mutual information value=1.17202) with  --  AT2G43460
69 AT3G53890  --  has similar expression pattern (mutual information value=1.12445) with  --  AT3G22230  --  has similar expression pattern (mutual information value=1.06355) with  --  AT3G09680
70 AT3G53890  --  has similar expression pattern (mutual information value=1.12445) with  --  AT3G22230  --  has similar expression pattern (mutual information value=1.06355) with  --  AT5G02960
71 AT3G53890  --  has similar expression pattern (mutual information value=1.12445) with  --  AT3G22230  --  has similar expression pattern (mutual information value=1.08623) with  --  RPL16B
72 AT3G53890  --  has similar expression pattern (mutual information value=1.12445) with  --  AT3G22230  --  has similar expression pattern (mutual information value=1.08623) with  --  AT5G45775
73 AT3G53890  --  has similar expression pattern (mutual information value=1.12445) with  --  AT3G22230  --  has similar expression pattern (mutual information value=1.02939) with  --  AT3G44590
74 AT3G53890  --  has similar expression pattern (mutual information value=1.12445) with  --  AT3G22230  --  has similar expression pattern (mutual information value=1.05364) with  --  AT5G60670
75 AT3G53890  --  has similar expression pattern (mutual information value=1.12445) with  --  AT3G22230  --  has similar expression pattern (mutual information value=1.11804) with  --  AT1G57860
76 AT3G53890  --  has similar expression pattern (mutual information value=1.12445) with  --  AT3G22230  --  has similar expression pattern (mutual information value=1.11804) with  --  AT1G57660
77 AT3G53890  --  has similar expression pattern (mutual information value=1.12445) with  --  AT3G22230  --  has similar expression pattern (mutual information value=1.06872) with  --  AT5G09510
78 AT3G53890  --  has similar expression pattern (mutual information value=1.2761) with  --  AT1G34030  --  interacts with  --  LSU1
79 AT3G53890  --  has similar expression pattern (mutual information value=1.2761) with  --  AT1G34030  --  has similar expression pattern (mutual information value=0.80231) with  --  AT2G31610
80 AT3G53890  --  has similar expression pattern (mutual information value=1.2761) with  --  AT1G34030  --  has similar expression pattern (mutual information value=1.34691) with  --  AT3G10610
81 AT3G53890  --  has similar expression pattern (mutual information value=1.2761) with  --  AT1G34030  --  has similar expression pattern (mutual information value=1.0117) with  --  EMB2167; ERD16; HAP4; UBQ1
82 AT3G53890  --  has similar expression pattern (mutual information value=1.2761) with  --  AT1G34030  --  has similar expression pattern (mutual information value=1.34902) with  --  AT3G53430
83 AT3G53890  --  has similar expression pattern (mutual information value=1.2761) with  --  AT1G34030  --  has similar expression pattern (mutual information value=1.1611) with  --  AT3G53740
84 AT3G53890  --  has similar expression pattern (mutual information value=1.2761) with  --  AT1G34030  --  has similar expression pattern (mutual information value=1.07571) with  --  AT5G07090
85 AT3G53890  --  has similar expression pattern (mutual information value=1.2761) with  --  AT1G34030  --  has similar expression pattern (mutual information value=1.09647) with  --  AT5G22440
86 AT3G53890  --  has similar expression pattern (mutual information value=1.2761) with  --  AT1G34030  --  has similar expression pattern (mutual information value=1.15892) with  --  RPS11-BETA
87 AT3G53890  --  has similar expression pattern (mutual information value=1.2761) with  --  AT1G34030  --  has similar expression pattern (mutual information value=1.46535) with  --  AT4G16720
88 AT3G53890  --  has similar expression pattern (mutual information value=1.2761) with  --  AT1G34030  --  has similar expression pattern (mutual information value=1.00779) with  --  AT4G14320
89 AT3G53890  --  has similar expression pattern (mutual information value=1.49304) with  --  AT3G43980  --  interacts with  --  LSU2
90 AT3G53890  --  has similar expression pattern (mutual information value=1.49304) with  --  AT3G43980  --  has similar expression pattern (mutual information value=0.839062) with  --  ATO1; TO1
91 AT3G53890  --  has similar expression pattern (mutual information value=1.49304) with  --  AT3G43980  --  has similar expression pattern (mutual information value=1.37344) with  --  AT2G27720
92 AT3G53890  --  has similar expression pattern (mutual information value=1.49304) with  --  AT3G43980  --  has similar expression pattern (mutual information value=1.26136) with  --  TOM6
93 AT3G53890  --  has similar expression pattern (mutual information value=1.49304) with  --  AT3G43980  --  has similar expression pattern (mutual information value=0.866314) with  --  ATPAE1; PAE1
94 AT3G53890  --  has similar expression pattern (mutual information value=1.49304) with  --  AT3G43980  --  has similar expression pattern (mutual information value=0.923212) with  --  AT3G09470
95 AT3G53890  --  has similar expression pattern (mutual information value=1.49304) with  --  AT3G43980  --  has similar expression pattern (mutual information value=1.17748) with  --  AT4G29390
96 AT3G53890  --  has similar expression pattern (mutual information value=1.49304) with  --  AT3G43980  --  has similar expression pattern (mutual information value=0.842936) with  --  AT3G47833
97 AT3G53890  --  has similar expression pattern (mutual information value=1.49304) with  --  AT3G43980  --  has similar expression pattern (mutual information value=1.19415) with  --  AT5G18790
98 AT3G53890  --  has similar expression pattern (mutual information value=1.49304) with  --  AT3G43980  --  has similar expression pattern (mutual information value=1.19415) with  --  AT3G06320
99 AT3G53890  --  has similar expression pattern (mutual information value=1.49304) with  --  AT3G43980  --  has similar expression pattern (mutual information value=0.850223) with  --  AT5G18920
100 AT3G53890  --  has similar expression pattern (mutual information value=1.49304) with  --  AT3G43980  --  has similar expression pattern (mutual information value=0.871164) with  --  AT5G39850
101 AT3G53890  --  has similar expression pattern (mutual information value=1.49304) with  --  AT3G43980  --  has similar expression pattern (mutual information value=1.53528) with  --  AT5G47930
102 AT3G53890  --  has similar expression pattern (mutual information value=1.49304) with  --  AT3G43980  --  has similar expression pattern (mutual information value=0.843512) with  --  U1A
103 AT3G53890  --  has similar expression pattern (mutual information value=1.49304) with  --  AT3G44010  --  interacts with  --  AT1G08590
104 AT3G53890  --  has similar expression pattern (mutual information value=1.02849) with  --  PAD1  --  interacts with  --  AT5G22310
105 AT3G53890  --  has similar expression pattern (mutual information value=1.02849) with  --  PAD1  --  interacts with  --  RGA1
106 AT3G53890  --  has similar expression pattern (mutual information value=1.02849) with  --  PAD1  --  interacts with  --  AKIN11; ATKIN11; KIN11; SNRK1.2
107 AT3G53890  --  has similar expression pattern (mutual information value=1.41059) with  --  AT3G56340  --  interacts with  --  AHL29; SOB3
108 AT3G53890  --  has similar expression pattern (mutual information value=1.41059) with  --  AT3G56340  --  has similar expression pattern (mutual information value=1.30002) with  --  AT2G05220
109 AT3G53890  --  has similar expression pattern (mutual information value=1.41059) with  --  AT3G56340  --  has similar expression pattern (mutual information value=1.30002) with  --  AT5G04800
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