Screen Resolution:     
Welcome to HRGRN
A Graph Search-Empowered Integrative Database of Arabidopsis Signaling Transduction, Metabolism and Gene Regulation Networks   
Location:  Home > Details for node smB
Type: Protein GRN ID: np33362 Name: smB
Annotation: smB | small nuclear ribonucleoprotein associated protein B
Gene Locus: AT4G20440
Gene Expression (Affy ATH1 probeset): 254475_at    
Graph Customization
   
Choose color for highlight:  
Display edge: validated and predicted
Display node/edge prompt:
Layout:
 as format     
Data Filter
 Protein modification
 Protein-protein interaction
        also include predicted relationship
 Compound-protein interaction
 TF-target gene regulation
 Small RNA-target regulation
        also include predicted relationship
 Carrier and transported molecule
 Catalytic chemical reaction
 Co-expressed gene pair
        with mutual information value >

  Ignore nodes having > relationships
 
Relationship type:  protein modification     catalytic chemical reaction     protein-protein interaction    
compound-protein interaction     TF-target gene regulation     small RNA-target regulation    
co-expressed gene pair     carrier and transported molecule     family/complex and member
Relationship evidence:  Solid line: validated          Dashed line: predicted
Relationship direction: Arrow: positive          T shape: negative          None arrow: unknown or n/a
Hormone association: Thicker line: hormone related relationship         : hormone related Node
Node type:  Transcription factor or transcriptional regulator       Compound       Kinase
 Small regulatory RNA (miRNA & ta-siRNA)       Other nodes
No. Path
2 smB  --  interacts with  --  AT5G62290
3 smB  --  interacts with  --  AT4G02840
4 smB  --  is the target gene of  --  ath-miR5648-3p
5 smB  --  has similar expression pattern (mutual information value=0.883332) with  --  AT1G33120
6 smB  --  has similar expression pattern (mutual information value=0.883332) with  --  PGY2
7 smB  --  has similar expression pattern (mutual information value=0.8825) with  --  AP40; P40; RP40; RPSAA
8 smB  --  has similar expression pattern (mutual information value=0.880698) with  --  AT3G53430
9 smB  --  has similar expression pattern (mutual information value=0.853062) with  --  AT5G41520
10 smB  --  has similar expression pattern (mutual information value=0.83001) with  --  AT1G07930
11 smB  --  has similar expression pattern (mutual information value=0.83001) with  --  AT1G07920
12 smB  --  has similar expression pattern (mutual information value=0.83001) with  --  AT1G07940
13 smB  --  interacts with  --  AT5G62290  --  has similar expression pattern (mutual information value=0.89114) with  --  AT3G07750
14 smB  --  interacts with  --  AT5G62290  --  has similar expression pattern (mutual information value=0.815263) with  --  AT5G64680
15 smB  --  interacts with  --  AT5G62290  --  interacts with  --  RCN1 ATB BETA BETA
16 smB  --  interacts with  --  AT4G02840  --  has similar expression pattern (mutual information value=0.913999) with  --  AT3G53890
17 smB  --  interacts with  --  AT4G02840  --  has similar expression pattern (mutual information value=0.836499) with  --  RPS11-BETA
18 smB  --  is the target gene of  --  ath-miR5648-3p  --  inhibit the expression of  --  BIN4; MID
19 smB  --  is the target gene of  --  ath-miR5648-3p  --  inhibit the expression of  --  AT3G05350
20 smB  --  is the target gene of  --  ath-miR5648-3p  --  inhibit the expression of  --  AT2G33400
21 smB  --  is the target gene of  --  ath-miR5648-3p  --  inhibit the expression of  --  AT2G23820
22 smB  --  is the target gene of  --  ath-miR5648-3p  --  inhibit the expression of  --  EDA16
23 smB  --  has similar expression pattern (mutual information value=0.883332) with  --  AT1G33120  --  has similar expression pattern (mutual information value=0.927729) with  --  UBQ5
24 smB  --  has similar expression pattern (mutual information value=0.883332) with  --  AT1G33120  --  has similar expression pattern (mutual information value=0.927729) with  --  UBQ6
25 smB  --  has similar expression pattern (mutual information value=0.883332) with  --  AT1G33120  --  has similar expression pattern (mutual information value=0.975152) with  --  AT1G30580
26 smB  --  has similar expression pattern (mutual information value=0.883332) with  --  AT1G33120  --  has similar expression pattern (mutual information value=0.977003) with  --  ATL5; OLI5; PGY3; RPL5A
27 smB  --  has similar expression pattern (mutual information value=0.883332) with  --  AT1G33120  --  has similar expression pattern (mutual information value=1.06983) with  --  RPL16B
28 smB  --  has similar expression pattern (mutual information value=0.883332) with  --  AT1G33120  --  has similar expression pattern (mutual information value=1.06983) with  --  AT5G45775
29 smB  --  has similar expression pattern (mutual information value=0.883332) with  --  AT1G33120  --  has similar expression pattern (mutual information value=1.16542) with  --  ARS27A; RS27A
30 smB  --  has similar expression pattern (mutual information value=0.883332) with  --  AT1G33120  --  has similar expression pattern (mutual information value=1.18397) with  --  AT5G48760
31 smB  --  has similar expression pattern (mutual information value=0.883332) with  --  AT1G33120  --  has similar expression pattern (mutual information value=1.01749) with  --  AT5G67510
32 smB  --  has similar expression pattern (mutual information value=0.883332) with  --  AT1G33120  --  is the target gene of  --  ath-miR5630b
33 smB  --  has similar expression pattern (mutual information value=0.883332) with  --  AT1G33120  --  is the target gene of  --  ath-miR5630a
34 smB  --  has similar expression pattern (mutual information value=0.883332) with  --  PGY2  --  interacts with  --  AHK2
35 smB  --  has similar expression pattern (mutual information value=0.8825) with  --  AP40; P40; RP40; RPSAA  --  interacts with  --  AT1G63480
36 smB  --  has similar expression pattern (mutual information value=0.8825) with  --  AP40; P40; RP40; RPSAA  --  interacts with  --  AtMC9; AtMCP2f; MC9; MCP2f
37 smB  --  has similar expression pattern (mutual information value=0.8825) with  --  AP40; P40; RP40; RPSAA  --  has similar expression pattern (mutual information value=1.08533) with  --  NOP56
38 smB  --  has similar expression pattern (mutual information value=0.8825) with  --  AP40; P40; RP40; RPSAA  --  has similar expression pattern (mutual information value=1.07488) with  --  AT1G55890
39 smB  --  has similar expression pattern (mutual information value=0.8825) with  --  AP40; P40; RP40; RPSAA  --  has similar expression pattern (mutual information value=0.919997) with  --  NRP1
40 smB  --  has similar expression pattern (mutual information value=0.8825) with  --  AP40; P40; RP40; RPSAA  --  has similar expression pattern (mutual information value=1.15584) with  --  AT3G07110
41 smB  --  has similar expression pattern (mutual information value=0.8825) with  --  AP40; P40; RP40; RPSAA  --  has similar expression pattern (mutual information value=0.926733) with  --  emb2171
42 smB  --  has similar expression pattern (mutual information value=0.8825) with  --  AP40; P40; RP40; RPSAA  --  has similar expression pattern (mutual information value=0.914241) with  --  AT3G13230
43 smB  --  has similar expression pattern (mutual information value=0.8825) with  --  AP40; P40; RP40; RPSAA  --  has similar expression pattern (mutual information value=1.1507) with  --  AT3G11250
44 smB  --  has similar expression pattern (mutual information value=0.8825) with  --  AP40; P40; RP40; RPSAA  --  has similar expression pattern (mutual information value=1.11659) with  --  HAP6
45 smB  --  has similar expression pattern (mutual information value=0.8825) with  --  AP40; P40; RP40; RPSAA  --  has similar expression pattern (mutual information value=1.20858) with  --  AT3G45030
46 smB  --  has similar expression pattern (mutual information value=0.8825) with  --  AP40; P40; RP40; RPSAA  --  has similar expression pattern (mutual information value=0.800792) with  --  AT5G27120
47 smB  --  has similar expression pattern (mutual information value=0.8825) with  --  AP40; P40; RP40; RPSAA  --  has similar expression pattern (mutual information value=0.800792) with  --  AT5G27140
48 smB  --  has similar expression pattern (mutual information value=0.880698) with  --  AT3G53430  --  has similar expression pattern (mutual information value=1.41108) with  --  AT2G27710
49 smB  --  has similar expression pattern (mutual information value=0.880698) with  --  AT3G53430  --  has similar expression pattern (mutual information value=1.2123) with  --  AT1G26880
50 smB  --  has similar expression pattern (mutual information value=0.880698) with  --  AT3G53430  --  has similar expression pattern (mutual information value=1.25458) with  --  RPL27A; RPL27AB
51 smB  --  has similar expression pattern (mutual information value=0.880698) with  --  AT3G53430  --  has similar expression pattern (mutual information value=1.10146) with  --  emb2386
52 smB  --  has similar expression pattern (mutual information value=0.880698) with  --  AT3G53430  --  has similar expression pattern (mutual information value=0.904201) with  --  AT1G74050
53 smB  --  has similar expression pattern (mutual information value=0.880698) with  --  AT3G53430  --  has similar expression pattern (mutual information value=1.1905) with  --  AT4G00810
54 smB  --  has similar expression pattern (mutual information value=0.880698) with  --  AT3G53430  --  has similar expression pattern (mutual information value=0.876764) with  --  AT4G39880
55 smB  --  has similar expression pattern (mutual information value=0.880698) with  --  AT3G53430  --  has similar expression pattern (mutual information value=1.37059) with  --  AT3G56340
56 smB  --  has similar expression pattern (mutual information value=0.880698) with  --  AT3G53430  --  has similar expression pattern (mutual information value=1.18919) with  --  AT2G05220
57 smB  --  has similar expression pattern (mutual information value=0.880698) with  --  AT3G53430  --  has similar expression pattern (mutual information value=1.18919) with  --  AT5G04800
58 smB  --  has similar expression pattern (mutual information value=0.880698) with  --  AT3G53430  --  has similar expression pattern (mutual information value=1.02501) with  --  AT1G58983
59 smB  --  has similar expression pattern (mutual information value=0.880698) with  --  AT3G53430  --  has similar expression pattern (mutual information value=1.02501) with  --  AT1G59359
60 smB  --  has similar expression pattern (mutual information value=0.880698) with  --  AT3G53430  --  has similar expression pattern (mutual information value=1.02501) with  --  AT1G58684
61 smB  --  has similar expression pattern (mutual information value=0.880698) with  --  AT3G53430  --  has similar expression pattern (mutual information value=1.02501) with  --  XW6
62 smB  --  has similar expression pattern (mutual information value=0.853062) with  --  AT5G41520  --  interacts with  --  AT4G31430
63 smB  --  has similar expression pattern (mutual information value=0.853062) with  --  AT5G41520  --  interacts with  --  AT3G54390
64 smB  --  has similar expression pattern (mutual information value=0.853062) with  --  AT5G41520  --  interacts with  --  ASIL1
65 smB  --  has similar expression pattern (mutual information value=0.853062) with  --  AT5G41520  --  interacts with  --  ATWRKY60; WRKY60
66 smB  --  has similar expression pattern (mutual information value=0.83001) with  --  AT1G07930  --  interacts with  --  AT1G77550
   Funding by the National Science Foundation    Funding by the Oklahoma Center for the Advancement of Science & Technology    Additional funding by the Samuel Roberts Noble Foundation

Copyright © The Zhao Lab

Disclaimer | Contact