Screen Resolution:     
Welcome to HRGRN
A Graph Search-Empowered Integrative Database of Arabidopsis Signaling Transduction, Metabolism and Gene Regulation Networks   
Location:  Home > Details for node AT3G56340
Type: Protein GRN ID: np28732 Name:
Annotation: Ribosomal protein S26e family protein
Gene Locus: AT3G56340
Gene Expression (Affy ATH1 probeset): 251737_at    
Graph Customization
   
Choose color for highlight:  
Display edge: validated and predicted
Display node/edge prompt:
Layout:
 as format     
Data Filter
 Protein modification
 Protein-protein interaction
        also include predicted relationship
 Compound-protein interaction
 TF-target gene regulation
 Small RNA-target regulation
        also include predicted relationship
 Carrier and transported molecule
 Catalytic chemical reaction
 Co-expressed gene pair
        with mutual information value >

  Ignore nodes having > relationships
 
Relationship type:  protein modification     catalytic chemical reaction     protein-protein interaction    
compound-protein interaction     TF-target gene regulation     small RNA-target regulation    
co-expressed gene pair     carrier and transported molecule     family/complex and member
Relationship evidence:  Solid line: validated          Dashed line: predicted
Relationship direction: Arrow: positive          T shape: negative          None arrow: unknown or n/a
Hormone association: Thicker line: hormone related relationship         : hormone related Node
Node type:  Transcription factor or transcriptional regulator       Compound       Kinase
 Small regulatory RNA (miRNA & ta-siRNA)       Other nodes
No. Path
2 AT3G56340  --  interacts with  --  AHL29; SOB3
3 AT3G56340  --  has similar expression pattern (mutual information value=1.24562) with  --  AT2G27720
4 AT3G56340  --  has similar expression pattern (mutual information value=1.30023) with  --  AT1G67430
5 AT3G56340  --  has similar expression pattern (mutual information value=1.35949) with  --  AT1G70600
6 AT3G56340  --  has similar expression pattern (mutual information value=1.35949) with  --  RPL27A; RPL27AB
7 AT3G56340  --  has similar expression pattern (mutual information value=1.14202) with  --  AT3G09500
8 AT3G56340  --  has similar expression pattern (mutual information value=1.14448) with  --  AT3G22230
9 AT3G56340  --  has similar expression pattern (mutual information value=1.48566) with  --  AT1G34030
10 AT3G56340  --  has similar expression pattern (mutual information value=1.37059) with  --  AT3G53430
11 AT3G56340  --  has similar expression pattern (mutual information value=1.41059) with  --  AT3G53890
12 AT3G56340  --  has similar expression pattern (mutual information value=1.30002) with  --  AT2G05220
13 AT3G56340  --  has similar expression pattern (mutual information value=1.30002) with  --  AT5G04800
14 AT3G56340  --  has similar expression pattern (mutual information value=1.30002) with  --  AT2G04390
15 AT3G56340  --  has similar expression pattern (mutual information value=1.35027) with  --  AT5G47930
16 AT3G56340  --  has similar expression pattern (mutual information value=1.1005) with  --  AT5G09510
17 AT3G56340  --  interacts with  --  AHL29; SOB3  --  interacts with  --  AGF1
18 AT3G56340  --  interacts with  --  AHL29; SOB3  --  interacts with  --  AT4G17660
19 AT3G56340  --  interacts with  --  AHL29; SOB3  --  interacts with  --  AT4G16440
20 AT3G56340  --  interacts with  --  AHL29; SOB3  --  interacts with  --  RAP2.4
21 AT3G56340  --  interacts with  --  AHL29; SOB3  --  interacts with  --  AT3G52930
22 AT3G56340  --  interacts with  --  AHL29; SOB3  --  interacts with  --  AT3G07090
23 AT3G56340  --  interacts with  --  AHL29; SOB3  --  interacts with  --  AT1G75580
24 AT3G56340  --  interacts with  --  AHL29; SOB3  --  interacts with  --  AT5G20160
25 AT3G56340  --  interacts with  --  AHL29; SOB3  --  interacts with  --  Hop3
26 AT3G56340  --  interacts with  --  AHL29; SOB3  --  interacts with  --  ATAN11; LWD1
27 AT3G56340  --  interacts with  --  AHL29; SOB3  --  interacts with  --  ORS1
28 AT3G56340  --  interacts with  --  AHL29; SOB3  --  interacts with  --  ATPAO2; PAO2
29 AT3G56340  --  interacts with  --  AHL29; SOB3  --  interacts with  --  IAMT1
30 AT3G56340  --  interacts with  --  AHL29; SOB3  --  interacts with  --  AT5G47920
31 AT3G56340  --  interacts with  --  AHL29; SOB3  --  interacts with  --  AT3G06610
32 AT3G56340  --  interacts with  --  AHL29; SOB3  --  interacts with  --  ATPDI7; ATPDIL5-4; PDI7; PDIL5-4
33 AT3G56340  --  interacts with  --  AHL29; SOB3  --  interacts with  --  AT2G36930
34 AT3G56340  --  interacts with  --  AHL29; SOB3  --  interacts with  --  MEE60
35 AT3G56340  --  interacts with  --  AHL29; SOB3  --  interacts with  --  AT1G23220
36 AT3G56340  --  interacts with  --  AHL29; SOB3  --  interacts with  --  AT1G26880
37 AT3G56340  --  interacts with  --  AHL29; SOB3  --  interacts with  --  AT5G42110
38 AT3G56340  --  interacts with  --  AHL29; SOB3  --  interacts with  --  KIWI
39 AT3G56340  --  interacts with  --  AHL29; SOB3  --  interacts with  --  RUB2
40 AT3G56340  --  interacts with  --  AHL29; SOB3  --  interacts with  --  cdf3; LP2; LTP2
41 AT3G56340  --  interacts with  --  AHL29; SOB3  --  interacts with  --  AXR4; RGR; RGR1
42 AT3G56340  --  interacts with  --  AHL29; SOB3  --  interacts with  --  AT1G11240
43 AT3G56340  --  interacts with  --  AHL29; SOB3  --  interacts with  --  AT2G43460
44 AT3G56340  --  interacts with  --  AHL29; SOB3  --  interacts with  --  AT4G35750
45 AT3G56340  --  interacts with  --  AHL29; SOB3  --  interacts with  --  RPS15
46 AT3G56340  --  interacts with  --  AHL29; SOB3  --  interacts with  --  ATDI21; DI21
47 AT3G56340  --  interacts with  --  AHL29; SOB3  --  interacts with  --  RPS6; RPS6A
48 AT3G56340  --  interacts with  --  AHL29; SOB3  --  interacts with  --  AT3G18740
49 AT3G56340  --  interacts with  --  AHL29; SOB3  --  interacts with  --  AT2G05510
50 AT3G56340  --  interacts with  --  AHL29; SOB3  --  interacts with  --  GAPC; GAPC-1; GAPC1
51 AT3G56340  --  interacts with  --  AHL29; SOB3  --  interacts with  --  AT5G01870
52 AT3G56340  --  interacts with  --  AHL29; SOB3  --  interacts with  --  AHL27; ESC; ORE7
53 AT3G56340  --  has similar expression pattern (mutual information value=1.24562) with  --  AT2G27720  --  has similar expression pattern (mutual information value=0.815744) with  --  ATO1; TO1
54 AT3G56340  --  has similar expression pattern (mutual information value=1.24562) with  --  AT2G27720  --  has similar expression pattern (mutual information value=1.23064) with  --  EMB2296
55 AT3G56340  --  has similar expression pattern (mutual information value=1.24562) with  --  AT2G27720  --  has similar expression pattern (mutual information value=1.23064) with  --  AT4G36130
56 AT3G56340  --  has similar expression pattern (mutual information value=1.24562) with  --  AT2G27720  --  has similar expression pattern (mutual information value=1.39054) with  --  AT3G07110
57 AT3G56340  --  has similar expression pattern (mutual information value=1.24562) with  --  AT2G27720  --  has similar expression pattern (mutual information value=1.37344) with  --  AT3G43980
58 AT3G56340  --  has similar expression pattern (mutual information value=1.24562) with  --  AT2G27720  --  has similar expression pattern (mutual information value=1.37344) with  --  AT3G44010
59 AT3G56340  --  has similar expression pattern (mutual information value=1.24562) with  --  AT2G27720  --  has similar expression pattern (mutual information value=0.833653) with  --  AT3G47833
60 AT3G56340  --  has similar expression pattern (mutual information value=1.24562) with  --  AT2G27720  --  has similar expression pattern (mutual information value=0.967033) with  --  PAD1
61 AT3G56340  --  has similar expression pattern (mutual information value=1.24562) with  --  AT2G27720  --  has similar expression pattern (mutual information value=1.17388) with  --  RPL24; RPL24B; STV1
62 AT3G56340  --  has similar expression pattern (mutual information value=1.24562) with  --  AT2G27720  --  has similar expression pattern (mutual information value=1.11074) with  --  AT5G03850
63 AT3G56340  --  has similar expression pattern (mutual information value=1.24562) with  --  AT2G27720  --  is modified by  --  SNRK2-8; SNRK2.8; SRK2C
64 AT3G56340  --  has similar expression pattern (mutual information value=1.30023) with  --  AT1G67430  --  interacts with  --  OBE1
65 AT3G56340  --  has similar expression pattern (mutual information value=1.30023) with  --  AT1G67430  --  has similar expression pattern (mutual information value=1.17165) with  --  AT1G77940
66 AT3G56340  --  has similar expression pattern (mutual information value=1.30023) with  --  AT1G67430  --  has similar expression pattern (mutual information value=1.31676) with  --  AT3G05560
67 AT3G56340  --  has similar expression pattern (mutual information value=1.30023) with  --  AT1G67430  --  has similar expression pattern (mutual information value=1.07118) with  --  AT3G01790
68 AT3G56340  --  has similar expression pattern (mutual information value=1.30023) with  --  AT1G67430  --  has similar expression pattern (mutual information value=1.082) with  --  AT5G02450
69 AT3G56340  --  has similar expression pattern (mutual information value=1.35949) with  --  AT1G70600  --  has similar expression pattern (mutual information value=1.05079) with  --  PGY1
70 AT3G56340  --  has similar expression pattern (mutual information value=1.35949) with  --  AT1G70600  --  has similar expression pattern (mutual information value=1.21676) with  --  RPL24A
71 AT3G56340  --  has similar expression pattern (mutual information value=1.35949) with  --  AT1G70600  --  has similar expression pattern (mutual information value=1.03539) with  --  AT1G29250
72 AT3G56340  --  has similar expression pattern (mutual information value=1.35949) with  --  AT1G70600  --  has similar expression pattern (mutual information value=1.01727) with  --  AT1G52930
73 AT3G56340  --  has similar expression pattern (mutual information value=1.35949) with  --  AT1G70600  --  has similar expression pattern (mutual information value=1.18508) with  --  emb2171
74 AT3G56340  --  has similar expression pattern (mutual information value=1.35949) with  --  AT1G70600  --  has similar expression pattern (mutual information value=0.981716) with  --  AT3G45030
75 AT3G56340  --  has similar expression pattern (mutual information value=1.35949) with  --  AT1G70600  --  has similar expression pattern (mutual information value=1.22778) with  --  AT3G60770
76 AT3G56340  --  has similar expression pattern (mutual information value=1.35949) with  --  AT1G70600  --  has similar expression pattern (mutual information value=1.10535) with  --  AT4G16720
77 AT3G56340  --  has similar expression pattern (mutual information value=1.35949) with  --  RPL27A; RPL27AB  --  interacts with  --  NAPRT2
78 AT3G56340  --  has similar expression pattern (mutual information value=1.14202) with  --  AT3G09500  --  has similar expression pattern (mutual information value=1.1364) with  --  AT1G08360
79 AT3G56340  --  has similar expression pattern (mutual information value=1.14202) with  --  AT3G09500  --  has similar expression pattern (mutual information value=1.18074) with  --  AT3G55750
80 AT3G56340  --  has similar expression pattern (mutual information value=1.14202) with  --  AT3G09500  --  has similar expression pattern (mutual information value=1.18074) with  --  AT1G41880
81 AT3G56340  --  has similar expression pattern (mutual information value=1.14202) with  --  AT3G09500  --  has similar expression pattern (mutual information value=1.19235) with  --  RPL34
82 AT3G56340  --  has similar expression pattern (mutual information value=1.14202) with  --  AT3G09500  --  has similar expression pattern (mutual information value=0.871897) with  --  AT1G20430
83 AT3G56340  --  has similar expression pattern (mutual information value=1.14202) with  --  AT3G09500  --  has similar expression pattern (mutual information value=0.863722) with  --  RPS18C
84 AT3G56340  --  has similar expression pattern (mutual information value=1.14202) with  --  AT3G09500  --  has similar expression pattern (mutual information value=1.0284) with  --  ATTOM22-V; TOM22-V; TOM9-2
85 AT3G56340  --  has similar expression pattern (mutual information value=1.14448) with  --  AT3G22230  --  has similar expression pattern (mutual information value=1.05345) with  --  ATRPL23A; RPL23A; RPL23AA
86 AT3G56340  --  has similar expression pattern (mutual information value=1.14448) with  --  AT3G22230  --  has similar expression pattern (mutual information value=1.01097) with  --  AT2G19750
87 AT3G56340  --  has similar expression pattern (mutual information value=1.14448) with  --  AT3G22230  --  has similar expression pattern (mutual information value=1.06355) with  --  AT3G09680
88 AT3G56340  --  has similar expression pattern (mutual information value=1.14448) with  --  AT3G22230  --  has similar expression pattern (mutual information value=1.08623) with  --  RPL16B
89 AT3G56340  --  has similar expression pattern (mutual information value=1.14448) with  --  AT3G22230  --  has similar expression pattern (mutual information value=1.08623) with  --  AT5G45775
90 AT3G56340  --  has similar expression pattern (mutual information value=1.14448) with  --  AT3G22230  --  has similar expression pattern (mutual information value=1.02939) with  --  AT3G44590
91 AT3G56340  --  has similar expression pattern (mutual information value=1.14448) with  --  AT3G22230  --  has similar expression pattern (mutual information value=1.10245) with  --  EMB1080
92 AT3G56340  --  has similar expression pattern (mutual information value=1.14448) with  --  AT3G22230  --  has similar expression pattern (mutual information value=1.05364) with  --  AT5G60670
93 AT3G56340  --  has similar expression pattern (mutual information value=1.14448) with  --  AT3G22230  --  has similar expression pattern (mutual information value=1.11804) with  --  AT1G57860
94 AT3G56340  --  has similar expression pattern (mutual information value=1.48566) with  --  AT1G34030  --  interacts with  --  LSU1
95 AT3G56340  --  has similar expression pattern (mutual information value=1.48566) with  --  AT1G34030  --  has similar expression pattern (mutual information value=0.80231) with  --  AT2G31610
96 AT3G56340  --  has similar expression pattern (mutual information value=1.48566) with  --  AT1G34030  --  has similar expression pattern (mutual information value=1.34691) with  --  AT3G10610
97 AT3G56340  --  has similar expression pattern (mutual information value=1.48566) with  --  AT1G34030  --  has similar expression pattern (mutual information value=1.0117) with  --  EMB2167; ERD16; HAP4; UBQ1
98 AT3G56340  --  has similar expression pattern (mutual information value=1.48566) with  --  AT1G34030  --  has similar expression pattern (mutual information value=1.1611) with  --  AT3G53740
99 AT3G56340  --  has similar expression pattern (mutual information value=1.48566) with  --  AT1G34030  --  has similar expression pattern (mutual information value=1.07571) with  --  AT5G07090
100 AT3G56340  --  has similar expression pattern (mutual information value=1.48566) with  --  AT1G34030  --  has similar expression pattern (mutual information value=1.15892) with  --  RPS11-BETA
101 AT3G56340  --  has similar expression pattern (mutual information value=1.48566) with  --  AT1G34030  --  has similar expression pattern (mutual information value=1.00779) with  --  AT4G14320
102 AT3G56340  --  has similar expression pattern (mutual information value=1.37059) with  --  AT3G53430  --  has similar expression pattern (mutual information value=1.10146) with  --  emb2386
103 AT3G56340  --  has similar expression pattern (mutual information value=1.37059) with  --  AT3G53430  --  has similar expression pattern (mutual information value=1.08399) with  --  NOP56
104 AT3G56340  --  has similar expression pattern (mutual information value=1.37059) with  --  AT3G53430  --  has similar expression pattern (mutual information value=1.11785) with  --  AT1G33120
105 AT3G56340  --  has similar expression pattern (mutual information value=1.37059) with  --  AT3G53430  --  has similar expression pattern (mutual information value=0.904201) with  --  AT1G74050
106 AT3G56340  --  has similar expression pattern (mutual information value=1.37059) with  --  AT3G53430  --  has similar expression pattern (mutual information value=0.894797) with  --  NRP1
107 AT3G56340  --  has similar expression pattern (mutual information value=1.37059) with  --  AT3G53430  --  has similar expression pattern (mutual information value=1.1905) with  --  AT4G00810
108 AT3G56340  --  has similar expression pattern (mutual information value=1.37059) with  --  AT3G53430  --  has similar expression pattern (mutual information value=1.22225) with  --  AT4G10450
109 AT3G56340  --  has similar expression pattern (mutual information value=1.37059) with  --  AT3G53430  --  has similar expression pattern (mutual information value=0.880698) with  --  smB
110 AT3G56340  --  has similar expression pattern (mutual information value=1.37059) with  --  AT3G53430  --  has similar expression pattern (mutual information value=0.876764) with  --  AT4G39880
111 AT3G56340  --  has similar expression pattern (mutual information value=1.37059) with  --  AT3G53430  --  has similar expression pattern (mutual information value=1.02501) with  --  AT1G58983
112 AT3G56340  --  has similar expression pattern (mutual information value=1.37059) with  --  AT3G53430  --  has similar expression pattern (mutual information value=1.02501) with  --  AT1G59359
113 AT3G56340  --  has similar expression pattern (mutual information value=1.37059) with  --  AT3G53430  --  has similar expression pattern (mutual information value=1.02501) with  --  AT1G58684
114 AT3G56340  --  has similar expression pattern (mutual information value=1.37059) with  --  AT3G53430  --  has similar expression pattern (mutual information value=1.02501) with  --  XW6
115 AT3G56340  --  has similar expression pattern (mutual information value=1.41059) with  --  AT3G53890  --  interacts with  --  AT1G63480
116 AT3G56340  --  has similar expression pattern (mutual information value=1.41059) with  --  AT3G53890  --  interacts with  --  AP40; P40; RP40; RPSAA
117 AT3G56340  --  has similar expression pattern (mutual information value=1.41059) with  --  AT3G53890  --  has similar expression pattern (mutual information value=0.900858) with  --  HTB1
118 AT3G56340  --  has similar expression pattern (mutual information value=1.41059) with  --  AT3G53890  --  has similar expression pattern (mutual information value=0.913999) with  --  AT4G02840
119 AT3G56340  --  has similar expression pattern (mutual information value=1.30002) with  --  AT2G05220  --  has similar expression pattern (mutual information value=1.11661) with  --  AT1G01100
120 AT3G56340  --  has similar expression pattern (mutual information value=1.30002) with  --  AT2G05220  --  has similar expression pattern (mutual information value=1.2778) with  --  AT5G16130
121 AT3G56340  --  has similar expression pattern (mutual information value=1.35027) with  --  AT5G47930  --  has similar expression pattern (mutual information value=1.03851) with  --  EDA27; NOP10
122 AT3G56340  --  has similar expression pattern (mutual information value=1.35027) with  --  AT5G47930  --  has similar expression pattern (mutual information value=0.927307) with  --  emb1129
123 AT3G56340  --  has similar expression pattern (mutual information value=1.35027) with  --  AT5G47930  --  has similar expression pattern (mutual information value=1.23959) with  --  TOM6
124 AT3G56340  --  has similar expression pattern (mutual information value=1.35027) with  --  AT5G47930  --  has similar expression pattern (mutual information value=1.24923) with  --  AT4G25740
125 AT3G56340  --  has similar expression pattern (mutual information value=1.35027) with  --  AT5G47930  --  has similar expression pattern (mutual information value=1.3315) with  --  AT4G33865
126 AT3G56340  --  has similar expression pattern (mutual information value=1.1005) with  --  AT5G09510  --  has similar expression pattern (mutual information value=1.09559) with  --  ROC2
127 AT3G56340  --  has similar expression pattern (mutual information value=1.1005) with  --  AT5G09510  --  has similar expression pattern (mutual information value=0.980544) with  --  AT3G58700
128 AT3G56340  --  has similar expression pattern (mutual information value=1.1005) with  --  AT5G09510  --  has similar expression pattern (mutual information value=0.927045) with  --  TIM8
   Funding by the National Science Foundation    Funding by the Oklahoma Center for the Advancement of Science & Technology    Additional funding by the Samuel Roberts Noble Foundation

Copyright © The Zhao Lab

Disclaimer | Contact