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A Graph Search-Empowered Integrative Database of Arabidopsis Signaling Transduction, Metabolism and Gene Regulation Networks   
Location:  Home > Details for node AT3G15460
Type: Protein GRN ID: np27078 Name:
Annotation: Ribosomal RNA processing Brix domain protein
Gene Locus: AT3G15460
Gene Expression (Affy ATH1 probeset): 258396_at    
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 Protein modification
 Protein-protein interaction
        also include predicted relationship
 Compound-protein interaction
 TF-target gene regulation
 Small RNA-target regulation
        also include predicted relationship
 Carrier and transported molecule
 Catalytic chemical reaction
 Co-expressed gene pair
        with mutual information value >

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Relationship type:  protein modification     catalytic chemical reaction     protein-protein interaction    
compound-protein interaction     TF-target gene regulation     small RNA-target regulation    
co-expressed gene pair     carrier and transported molecule     family/complex and member
Relationship evidence:  Solid line: validated          Dashed line: predicted
Relationship direction: Arrow: positive          T shape: negative          None arrow: unknown or n/a
Hormone association: Thicker line: hormone related relationship         : hormone related Node
Node type:  Transcription factor or transcriptional regulator       Compound       Kinase
 Small regulatory RNA (miRNA & ta-siRNA)       Other nodes
No. Path
2 AT3G15460  --  has similar expression pattern (mutual information value=1.01958) with  --  NFD6
3 AT3G15460  --  has similar expression pattern (mutual information value=0.935625) with  --  EMB3108
4 AT3G15460  --  has similar expression pattern (mutual information value=0.9865) with  --  AT1G28395
5 AT3G15460  --  has similar expression pattern (mutual information value=0.898144) with  --  PYRB
6 AT3G15460  --  has similar expression pattern (mutual information value=0.933594) with  --  AT3G20240
7 AT3G15460  --  has similar expression pattern (mutual information value=0.942578) with  --  AR192
8 AT3G15460  --  has similar expression pattern (mutual information value=0.857854) with  --  AT4G38100
9 AT3G15460  --  has similar expression pattern (mutual information value=1.01443) with  --  ATPURM; EMB2818; PUR5
10 AT3G15460  --  has similar expression pattern (mutual information value=0.938865) with  --  PYRD
11 AT3G15460  --  has similar expression pattern (mutual information value=0.867468) with  --  DegP10
12 AT3G15460  --  has similar expression pattern (mutual information value=1.01958) with  --  NFD6  --  interacts with  --  AT3G54390
13 AT3G15460  --  has similar expression pattern (mutual information value=1.01958) with  --  NFD6  --  interacts with  --  AT4G17680
14 AT3G15460  --  has similar expression pattern (mutual information value=1.01958) with  --  NFD6  --  interacts with  --  ATHSP23.6-MITO; HSP23.6-MITO
15 AT3G15460  --  has similar expression pattern (mutual information value=1.01958) with  --  NFD6  --  has similar expression pattern (mutual information value=1.38736) with  --  AT2G45710
16 AT3G15460  --  has similar expression pattern (mutual information value=1.01958) with  --  NFD6  --  has similar expression pattern (mutual information value=0.947968) with  --  AT2G20390
17 AT3G15460  --  has similar expression pattern (mutual information value=1.01958) with  --  NFD6  --  has similar expression pattern (mutual information value=0.847726) with  --  AT1G60080
18 AT3G15460  --  has similar expression pattern (mutual information value=1.01958) with  --  NFD6  --  has similar expression pattern (mutual information value=0.928703) with  --  AT1G80720
19 AT3G15460  --  has similar expression pattern (mutual information value=1.01958) with  --  NFD6  --  has similar expression pattern (mutual information value=1.05508) with  --  AT3G18760
20 AT3G15460  --  has similar expression pattern (mutual information value=1.01958) with  --  NFD6  --  has similar expression pattern (mutual information value=0.847548) with  --  AT3G12370
21 AT3G15460  --  has similar expression pattern (mutual information value=1.01958) with  --  NFD6  --  has similar expression pattern (mutual information value=0.871805) with  --  RRP41
22 AT3G15460  --  has similar expression pattern (mutual information value=1.01958) with  --  NFD6  --  has similar expression pattern (mutual information value=0.90799) with  --  AT5G02050
23 AT3G15460  --  has similar expression pattern (mutual information value=1.01958) with  --  NFD6  --  has similar expression pattern (mutual information value=1.1665) with  --  ATPHB3; PHB3
24 AT3G15460  --  has similar expression pattern (mutual information value=1.01958) with  --  NFD6  --  has similar expression pattern (mutual information value=1.0046) with  --  AT5G47455
25 AT3G15460  --  has similar expression pattern (mutual information value=1.01958) with  --  NFD6  --  has similar expression pattern (mutual information value=0.827679) with  --  AT5G51220
26 AT3G15460  --  has similar expression pattern (mutual information value=0.935625) with  --  EMB3108  --  interacts with  --  RPL24; RPL24B; STV1
27 AT3G15460  --  has similar expression pattern (mutual information value=0.935625) with  --  EMB3108  --  has similar expression pattern (mutual information value=0.912674) with  --  EMB2001
28 AT3G15460  --  has similar expression pattern (mutual information value=0.935625) with  --  EMB3108  --  has similar expression pattern (mutual information value=1.08862) with  --  OTP81
29 AT3G15460  --  has similar expression pattern (mutual information value=0.935625) with  --  EMB3108  --  has similar expression pattern (mutual information value=0.871385) with  --  AT2G37500
30 AT3G15460  --  has similar expression pattern (mutual information value=0.935625) with  --  EMB3108  --  has similar expression pattern (mutual information value=0.806973) with  --  ATCAF1; CAF1
31 AT3G15460  --  has similar expression pattern (mutual information value=0.935625) with  --  EMB3108  --  has similar expression pattern (mutual information value=1.05337) with  --  CPZ; TRZ2
32 AT3G15460  --  has similar expression pattern (mutual information value=0.935625) with  --  EMB3108  --  has similar expression pattern (mutual information value=1.00052) with  --  AtHsp90.5; CR88; EMB1956; Hsp88.1; HSP90.5
33 AT3G15460  --  has similar expression pattern (mutual information value=0.935625) with  --  EMB3108  --  has similar expression pattern (mutual information value=0.991737) with  --  AT1G48570
34 AT3G15460  --  has similar expression pattern (mutual information value=0.935625) with  --  EMB3108  --  has similar expression pattern (mutual information value=1.04803) with  --  AT1G48460
35 AT3G15460  --  has similar expression pattern (mutual information value=0.935625) with  --  EMB3108  --  has similar expression pattern (mutual information value=0.879081) with  --  GYRB1
36 AT3G15460  --  has similar expression pattern (mutual information value=0.935625) with  --  EMB3108  --  has similar expression pattern (mutual information value=0.879081) with  --  GYRB2
37 AT3G15460  --  has similar expression pattern (mutual information value=0.935625) with  --  EMB3108  --  has similar expression pattern (mutual information value=0.912315) with  --  GYRA
38 AT3G15460  --  has similar expression pattern (mutual information value=0.935625) with  --  EMB3108  --  has similar expression pattern (mutual information value=0.963434) with  --  RFC3
39 AT3G15460  --  has similar expression pattern (mutual information value=0.935625) with  --  EMB3108  --  has similar expression pattern (mutual information value=0.929483) with  --  AtSHMT3; SHM3
40 AT3G15460  --  has similar expression pattern (mutual information value=0.935625) with  --  EMB3108  --  has similar expression pattern (mutual information value=0.802456) with  --  AT4G34290
41 AT3G15460  --  has similar expression pattern (mutual information value=0.935625) with  --  EMB3108  --  has similar expression pattern (mutual information value=1.23941) with  --  PDE340
42 AT3G15460  --  has similar expression pattern (mutual information value=0.935625) with  --  EMB3108  --  has similar expression pattern (mutual information value=0.971257) with  --  ATFTSZ1-1; CPFTSZ; FTSZ1-1
43 AT3G15460  --  has similar expression pattern (mutual information value=0.935625) with  --  EMB3108  --  has similar expression pattern (mutual information value=0.917271) with  --  ATIPT9
44 AT3G15460  --  has similar expression pattern (mutual information value=0.935625) with  --  EMB3108  --  transport  --  meso-Tartaric acid
45 AT3G15460  --  has similar expression pattern (mutual information value=0.935625) with  --  EMB3108  --  transport  --  Citrate
46 AT3G15460  --  has similar expression pattern (mutual information value=0.9865) with  --  AT1G28395  --  has similar expression pattern (mutual information value=1.26766) with  --  AT2G27775
47 AT3G15460  --  has similar expression pattern (mutual information value=0.9865) with  --  AT1G28395  --  has similar expression pattern (mutual information value=1.10056) with  --  AT2G15000
48 AT3G15460  --  has similar expression pattern (mutual information value=0.9865) with  --  AT1G28395  --  has similar expression pattern (mutual information value=1.37713) with  --  AT2G35790
49 AT3G15460  --  has similar expression pattern (mutual information value=0.9865) with  --  AT1G28395  --  has similar expression pattern (mutual information value=1.28398) with  --  TOM6
50 AT3G15460  --  has similar expression pattern (mutual information value=0.9865) with  --  AT1G28395  --  has similar expression pattern (mutual information value=0.931244) with  --  ATWHY2; WHY2
51 AT3G15460  --  has similar expression pattern (mutual information value=0.9865) with  --  AT1G28395  --  has similar expression pattern (mutual information value=1.14326) with  --  RPS10
52 AT3G15460  --  has similar expression pattern (mutual information value=0.9865) with  --  AT1G28395  --  has similar expression pattern (mutual information value=0.988054) with  --  AT3G25120
53 AT3G15460  --  has similar expression pattern (mutual information value=0.9865) with  --  AT1G28395  --  has similar expression pattern (mutual information value=1.00982) with  --  AT3G13230
54 AT3G15460  --  has similar expression pattern (mutual information value=0.9865) with  --  AT1G28395  --  has similar expression pattern (mutual information value=1.39896) with  --  AT4G12600
55 AT3G15460  --  has similar expression pattern (mutual information value=0.9865) with  --  AT1G28395  --  has similar expression pattern (mutual information value=1.12679) with  --  AT4G32605
56 AT3G15460  --  has similar expression pattern (mutual information value=0.9865) with  --  AT1G28395  --  has similar expression pattern (mutual information value=1.07965) with  --  AT4G37660
57 AT3G15460  --  has similar expression pattern (mutual information value=0.9865) with  --  AT1G28395  --  has similar expression pattern (mutual information value=0.873356) with  --  AT3G59840
58 AT3G15460  --  has similar expression pattern (mutual information value=0.9865) with  --  AT1G28395  --  has similar expression pattern (mutual information value=0.875358) with  --  TIM8
59 AT3G15460  --  has similar expression pattern (mutual information value=0.9865) with  --  AT1G28395  --  has similar expression pattern (mutual information value=1.10987) with  --  AT5G56670
60 AT3G15460  --  has similar expression pattern (mutual information value=0.9865) with  --  AT1G28395  --  has similar expression pattern (mutual information value=1.0998) with  --  RPS28
61 AT3G15460  --  has similar expression pattern (mutual information value=0.9865) with  --  AT1G28395  --  has similar expression pattern (mutual information value=1.45142) with  --  AT5G20160
62 AT3G15460  --  has similar expression pattern (mutual information value=0.9865) with  --  AT1G28395  --  has similar expression pattern (mutual information value=0.90701) with  --  U1A
63 AT3G15460  --  has similar expression pattern (mutual information value=0.898144) with  --  PYRB  --  has similar expression pattern (mutual information value=0.825007) with  --  AT2G35040
64 AT3G15460  --  has similar expression pattern (mutual information value=0.898144) with  --  PYRB  --  has similar expression pattern (mutual information value=0.87219) with  --  EMB1047; EMB156; EMB36; FTSH12
65 AT3G15460  --  has similar expression pattern (mutual information value=0.898144) with  --  PYRB  --  has similar expression pattern (mutual information value=0.92467) with  --  AT1G80750
66 AT3G15460  --  has similar expression pattern (mutual information value=0.898144) with  --  PYRB  --  has similar expression pattern (mutual information value=0.863465) with  --  ERD14
67 AT3G15460  --  has similar expression pattern (mutual information value=0.898144) with  --  PYRB  --  has similar expression pattern (mutual information value=0.892713) with  --  OTC
68 AT3G15460  --  has similar expression pattern (mutual information value=0.898144) with  --  PYRB  --  has similar expression pattern (mutual information value=1.09995) with  --  CARA; VEN6
69 AT3G15460  --  has similar expression pattern (mutual information value=0.898144) with  --  PYRB  --  has similar expression pattern (mutual information value=0.823075) with  --  AT1G16870
70 AT3G15460  --  has similar expression pattern (mutual information value=0.898144) with  --  PYRB  --  has similar expression pattern (mutual information value=0.841877) with  --  AT3G58610
71 AT3G15460  --  has similar expression pattern (mutual information value=0.898144) with  --  PYRB  --  has similar expression pattern (mutual information value=0.85383) with  --  AT5G10010
72 AT3G15460  --  has similar expression pattern (mutual information value=0.898144) with  --  PYRB  --  has product (in catalytic reaction)  --  N-Carbamoyl-L-aspartate
73 AT3G15460  --  has similar expression pattern (mutual information value=0.898144) with  --  PYRB  --  is the target gene of  --  ath-miR5640
74 AT3G15460  --  has similar expression pattern (mutual information value=0.933594) with  --  AT3G20240  --  has similar expression pattern (mutual information value=0.82514) with  --  AT1G71840
75 AT3G15460  --  has similar expression pattern (mutual information value=0.933594) with  --  AT3G20240  --  has similar expression pattern (mutual information value=1.00937) with  --  BIR6
76 AT3G15460  --  has similar expression pattern (mutual information value=0.933594) with  --  AT3G20240  --  has similar expression pattern (mutual information value=1.19086) with  --  AT5G05990
77 AT3G15460  --  has similar expression pattern (mutual information value=0.933594) with  --  AT3G20240  --  has similar expression pattern (mutual information value=0.952409) with  --  AT5G54580
78 AT3G15460  --  has similar expression pattern (mutual information value=0.942578) with  --  AR192  --  interacts with  --  CLA; CLA1; DEF; DXPS2; DXS
79 AT3G15460  --  has similar expression pattern (mutual information value=0.942578) with  --  AR192  --  has similar expression pattern (mutual information value=1.00174) with  --  AT1G63250
80 AT3G15460  --  has similar expression pattern (mutual information value=0.942578) with  --  AR192  --  has similar expression pattern (mutual information value=1.00174) with  --  AT2G07750
81 AT3G15460  --  has similar expression pattern (mutual information value=0.942578) with  --  AR192  --  has similar expression pattern (mutual information value=0.954343) with  --  AT2G37400
82 AT3G15460  --  has similar expression pattern (mutual information value=0.942578) with  --  AR192  --  has similar expression pattern (mutual information value=0.984111) with  --  AT2G18330
83 AT3G15460  --  has similar expression pattern (mutual information value=0.942578) with  --  AR192  --  has similar expression pattern (mutual information value=0.95321) with  --  AT2G31240
84 AT3G15460  --  has similar expression pattern (mutual information value=0.942578) with  --  AR192  --  has similar expression pattern (mutual information value=0.942376) with  --  AT2G37020
85 AT3G15460  --  has similar expression pattern (mutual information value=0.942578) with  --  AR192  --  has similar expression pattern (mutual information value=1.04515) with  --  ATPHB6; PHB6
86 AT3G15460  --  has similar expression pattern (mutual information value=0.942578) with  --  AR192  --  has similar expression pattern (mutual information value=1.04515) with  --  ATPHB1; PHB1
87 AT3G15460  --  has similar expression pattern (mutual information value=0.942578) with  --  AR192  --  has similar expression pattern (mutual information value=0.948179) with  --  AT1G13030
88 AT3G15460  --  has similar expression pattern (mutual information value=0.942578) with  --  AR192  --  has similar expression pattern (mutual information value=0.932303) with  --  EMB1860; TIM50
89 AT3G15460  --  has similar expression pattern (mutual information value=0.942578) with  --  AR192  --  has similar expression pattern (mutual information value=0.941405) with  --  PPR596
90 AT3G15460  --  has similar expression pattern (mutual information value=0.942578) with  --  AR192  --  has similar expression pattern (mutual information value=0.963131) with  --  AT3G13940
91 AT3G15460  --  has similar expression pattern (mutual information value=0.942578) with  --  AR192  --  has similar expression pattern (mutual information value=0.88678) with  --  AT4G04940
92 AT3G15460  --  has similar expression pattern (mutual information value=0.942578) with  --  AR192  --  has similar expression pattern (mutual information value=0.880423) with  --  AT4G28450
93 AT3G15460  --  has similar expression pattern (mutual information value=0.942578) with  --  AR192  --  has similar expression pattern (mutual information value=0.877175) with  --  ATPRMT11; ATPRMT1B; PRMT11; PRMT1B
94 AT3G15460  --  has similar expression pattern (mutual information value=0.942578) with  --  AR192  --  has similar expression pattern (mutual information value=0.949407) with  --  RBL
95 AT3G15460  --  has similar expression pattern (mutual information value=0.942578) with  --  AR192  --  has similar expression pattern (mutual information value=0.938589) with  --  AT3G55605
96 AT3G15460  --  has similar expression pattern (mutual information value=0.942578) with  --  AR192  --  has similar expression pattern (mutual information value=0.851967) with  --  AT3G57490
97 AT3G15460  --  has similar expression pattern (mutual information value=0.942578) with  --  AR192  --  has similar expression pattern (mutual information value=0.964094) with  --  AT5G42150
98 AT3G15460  --  has similar expression pattern (mutual information value=0.942578) with  --  AR192  --  has similar expression pattern (mutual information value=1.00613) with  --  AT5G15750
99 AT3G15460  --  has similar expression pattern (mutual information value=1.01443) with  --  ATPURM; EMB2818; PUR5  --  has similar expression pattern (mutual information value=1.22542) with  --  NOP56
100 AT3G15460  --  has similar expression pattern (mutual information value=1.01443) with  --  ATPURM; EMB2818; PUR5  --  has similar expression pattern (mutual information value=0.978262) with  --  AT3G21540
101 AT3G15460  --  has similar expression pattern (mutual information value=1.01443) with  --  ATPURM; EMB2818; PUR5  --  has similar expression pattern (mutual information value=1.32732) with  --  ATHD2A; HD2A; HDA3; HDT1
102 AT3G15460  --  has similar expression pattern (mutual information value=1.01443) with  --  ATPURM; EMB2818; PUR5  --  has similar expression pattern (mutual information value=0.840632) with  --  AT5G23250
103 AT3G15460  --  has similar expression pattern (mutual information value=1.01443) with  --  ATPURM; EMB2818; PUR5  --  has similar expression pattern (mutual information value=1.28005) with  --  ATEBP1; ATG2; EBP1
104 AT3G15460  --  has similar expression pattern (mutual information value=1.01443) with  --  ATPURM; EMB2818; PUR5  --  has product (in catalytic reaction)  --  Aminoimidazole ribotide
105 AT3G15460  --  has similar expression pattern (mutual information value=0.938865) with  --  PYRD  --  has similar expression pattern (mutual information value=1.10361) with  --  AT1G63660
106 AT3G15460  --  has similar expression pattern (mutual information value=0.938865) with  --  PYRD  --  has similar expression pattern (mutual information value=0.997054) with  --  AT3G13160
107 AT3G15460  --  has similar expression pattern (mutual information value=0.938865) with  --  PYRD  --  has similar expression pattern (mutual information value=0.955642) with  --  AT4G20020
108 AT3G15460  --  has similar expression pattern (mutual information value=0.938865) with  --  PYRD  --  has similar expression pattern (mutual information value=0.849277) with  --  AT3G57940
109 AT3G15460  --  has similar expression pattern (mutual information value=0.938865) with  --  PYRD  --  has similar expression pattern (mutual information value=0.846444) with  --  ATMSI1; MEE70; MSI1
110 AT3G15460  --  has similar expression pattern (mutual information value=0.938865) with  --  PYRD  --  has similar expression pattern (mutual information value=1.07547) with  --  AT4G15640
111 AT3G15460  --  has similar expression pattern (mutual information value=0.938865) with  --  PYRD  --  has product (in catalytic reaction)  --  Hydroquinone
112 AT3G15460  --  has similar expression pattern (mutual information value=0.938865) with  --  PYRD  --  has product (in catalytic reaction)  --  Orotate
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