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Location:  Home > Details for node AtSHMT3; SHM3
Type: Protein GRN ID: np31459 Name: AtSHMT3; SHM3
Annotation: SHM3, AtSHMT3 | serine hydroxymethyltransferase 3 [EC:2.1.2.1]
Gene Locus: AT4G32520
Gene Expression (Affy ATH1 probeset): 253438_at    
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 Protein modification
 Protein-protein interaction
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 Compound-protein interaction
 TF-target gene regulation
 Small RNA-target regulation
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 Carrier and transported molecule
 Catalytic chemical reaction
 Co-expressed gene pair
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Relationship type:  protein modification     catalytic chemical reaction     protein-protein interaction    
compound-protein interaction     TF-target gene regulation     small RNA-target regulation    
co-expressed gene pair     carrier and transported molecule     family/complex and member
Relationship evidence:  Solid line: validated          Dashed line: predicted
Relationship direction: Arrow: positive          T shape: negative          None arrow: unknown or n/a
Hormone association: Thicker line: hormone related relationship         : hormone related Node
Node type:  Transcription factor or transcriptional regulator       Compound       Kinase
 Small regulatory RNA (miRNA & ta-siRNA)       Other nodes
No. Path
2 AtSHMT3; SHM3  --  has product (in catalytic reaction)  --  Tetrahydrofolate
3 AtSHMT3; SHM3  --  interacts with  --  AT4G08520
4 AtSHMT3; SHM3  --  interacts with  --  ATGRX4; GRX4
5 AtSHMT3; SHM3  --  has similar expression pattern (mutual information value=0.929483) with  --  EMB3108
6 AtSHMT3; SHM3  --  has similar expression pattern (mutual information value=0.839203) with  --  AtHsp90.5; CR88; EMB1956; Hsp88.1; HSP90.5
7 AtSHMT3; SHM3  --  has similar expression pattern (mutual information value=0.924584) with  --  AT1G48460
8 AtSHMT3; SHM3  --  has similar expression pattern (mutual information value=0.871807) with  --  FLN2
9 AtSHMT3; SHM3  --  has similar expression pattern (mutual information value=0.871024) with  --  GYRB1
10 AtSHMT3; SHM3  --  has similar expression pattern (mutual information value=0.871024) with  --  GYRB2
11 AtSHMT3; SHM3  --  has similar expression pattern (mutual information value=0.837925) with  --  GYRA
12 AtSHMT3; SHM3  --  has similar expression pattern (mutual information value=1.00726) with  --  emb2742
13 AtSHMT3; SHM3  --  has similar expression pattern (mutual information value=0.939766) with  --  AT3G57940
14 AtSHMT3; SHM3  --  has similar expression pattern (mutual information value=0.849713) with  --  AT5G10920
15 AtSHMT3; SHM3  --  has similar expression pattern (mutual information value=0.858151) with  --  ATOEP80; EMB213; OEP80; TOC75-V
16 AtSHMT3; SHM3  --  has product (in catalytic reaction)  --  Tetrahydrofolate  --  has product (in catalytic reaction)  --  10-Formyltetrahydrofolate
17 AtSHMT3; SHM3  --  has product (in catalytic reaction)  --  Tetrahydrofolate  --  has product (in catalytic reaction)  --  5,10-Methylenetetrahydrofolate
18 AtSHMT3; SHM3  --  has product (in catalytic reaction)  --  Tetrahydrofolate  --  has product (in catalytic reaction)  --  Dihydrofolate
19 AtSHMT3; SHM3  --  has product (in catalytic reaction)  --  Tetrahydrofolate  --  is product (in catalytic reaction) of  --  AT5G47435
20 AtSHMT3; SHM3  --  has product (in catalytic reaction)  --  Tetrahydrofolate  --  is product (in catalytic reaction) of  --  AT4G17360
21 AtSHMT3; SHM3  --  has product (in catalytic reaction)  --  Tetrahydrofolate  --  is product (in catalytic reaction) of  --  3-Methyl-2-oxobutanoic acid
22 AtSHMT3; SHM3  --  has product (in catalytic reaction)  --  Tetrahydrofolate  --  is product (in catalytic reaction) of  --  KPHMT1; PANB1
23 AtSHMT3; SHM3  --  has product (in catalytic reaction)  --  Tetrahydrofolate  --  is product (in catalytic reaction) of  --  pde194
24 AtSHMT3; SHM3  --  has product (in catalytic reaction)  --  Tetrahydrofolate  --  is product (in catalytic reaction) of  --  AT2G35040
25 AtSHMT3; SHM3  --  has product (in catalytic reaction)  --  Tetrahydrofolate  --  is product (in catalytic reaction) of  --  1-(5'-Phosphoribosyl)-5-amino-4-imidazolecarboxamide
26 AtSHMT3; SHM3  --  has product (in catalytic reaction)  --  Tetrahydrofolate  --  is product (in catalytic reaction) of  --  AT1G31220
27 AtSHMT3; SHM3  --  has product (in catalytic reaction)  --  Tetrahydrofolate  --  is product (in catalytic reaction) of  --  5'-Phosphoribosylglycinamide
28 AtSHMT3; SHM3  --  has product (in catalytic reaction)  --  Tetrahydrofolate  --  is product (in catalytic reaction) of  --  SHM6
29 AtSHMT3; SHM3  --  interacts with  --  AT4G08520  --  interacts with  --  ATHSP23.6-MITO; HSP23.6-MITO
30 AtSHMT3; SHM3  --  interacts with  --  AT4G08520  --  interacts with  --  BP; BP1; KNAT1
31 AtSHMT3; SHM3  --  interacts with  --  AT4G08520  --  interacts with  --  AT3G05640
32 AtSHMT3; SHM3  --  interacts with  --  AT4G08520  --  interacts with  --  AT1G15810
33 AtSHMT3; SHM3  --  interacts with  --  ATGRX4; GRX4  --  interacts with  --  ATSUFE; CPSUFE; EMB1374; SUFE1
34 AtSHMT3; SHM3  --  interacts with  --  ATGRX4; GRX4  --  interacts with  --  AT5G17560
35 AtSHMT3; SHM3  --  interacts with  --  ATGRX4; GRX4  --  interacts with  --  AT1G55805
36 AtSHMT3; SHM3  --  interacts with  --  ATGRX4; GRX4  --  interacts with  --  AT4G15730
37 AtSHMT3; SHM3  --  interacts with  --  ATGRX4; GRX4  --  interacts with  --  AT5G42220
38 AtSHMT3; SHM3  --  interacts with  --  ATGRX4; GRX4  --  interacts with  --  AT5G22355
39 AtSHMT3; SHM3  --  interacts with  --  ATGRX4; GRX4  --  interacts with  --  AT4G27610
40 AtSHMT3; SHM3  --  interacts with  --  ATGRX4; GRX4  --  interacts with  --  ATBZIP24; BZIP24
41 AtSHMT3; SHM3  --  interacts with  --  ATGRX4; GRX4  --  interacts with  --  AT5G09830
42 AtSHMT3; SHM3  --  interacts with  --  ATGRX4; GRX4  --  interacts with  --  PANB2
43 AtSHMT3; SHM3  --  interacts with  --  ATGRX4; GRX4  --  interacts with  --  ANK6; PIA2
44 AtSHMT3; SHM3  --  interacts with  --  ATGRX4; GRX4  --  interacts with  --  AK; AK-LYS1; AK1
45 AtSHMT3; SHM3  --  interacts with  --  ATGRX4; GRX4  --  interacts with  --  ATCCS; CCS
46 AtSHMT3; SHM3  --  interacts with  --  ATGRX4; GRX4  --  interacts with  --  AT2G16710
47 AtSHMT3; SHM3  --  interacts with  --  ATGRX4; GRX4  --  interacts with  --  AT3G01670
48 AtSHMT3; SHM3  --  interacts with  --  ATGRX4; GRX4  --  interacts with  --  IAA3
49 AtSHMT3; SHM3  --  has similar expression pattern (mutual information value=0.929483) with  --  EMB3108  --  interacts with  --  RPL24; RPL24B; STV1
50 AtSHMT3; SHM3  --  has similar expression pattern (mutual information value=0.929483) with  --  EMB3108  --  has similar expression pattern (mutual information value=0.912674) with  --  EMB2001
51 AtSHMT3; SHM3  --  has similar expression pattern (mutual information value=0.929483) with  --  EMB3108  --  has similar expression pattern (mutual information value=1.08862) with  --  OTP81
52 AtSHMT3; SHM3  --  has similar expression pattern (mutual information value=0.929483) with  --  EMB3108  --  has similar expression pattern (mutual information value=0.871385) with  --  AT2G37500
53 AtSHMT3; SHM3  --  has similar expression pattern (mutual information value=0.929483) with  --  EMB3108  --  has similar expression pattern (mutual information value=0.806973) with  --  ATCAF1; CAF1
54 AtSHMT3; SHM3  --  has similar expression pattern (mutual information value=0.929483) with  --  EMB3108  --  has similar expression pattern (mutual information value=1.05337) with  --  CPZ; TRZ2
55 AtSHMT3; SHM3  --  has similar expression pattern (mutual information value=0.929483) with  --  EMB3108  --  has similar expression pattern (mutual information value=0.991737) with  --  AT1G48570
56 AtSHMT3; SHM3  --  has similar expression pattern (mutual information value=0.929483) with  --  EMB3108  --  has similar expression pattern (mutual information value=0.935625) with  --  AT3G15460
57 AtSHMT3; SHM3  --  has similar expression pattern (mutual information value=0.929483) with  --  EMB3108  --  has similar expression pattern (mutual information value=0.963434) with  --  RFC3
58 AtSHMT3; SHM3  --  has similar expression pattern (mutual information value=0.929483) with  --  EMB3108  --  has similar expression pattern (mutual information value=0.904589) with  --  PYRB
59 AtSHMT3; SHM3  --  has similar expression pattern (mutual information value=0.929483) with  --  EMB3108  --  has similar expression pattern (mutual information value=0.969647) with  --  AT3G20240
60 AtSHMT3; SHM3  --  has similar expression pattern (mutual information value=0.929483) with  --  EMB3108  --  has similar expression pattern (mutual information value=0.802456) with  --  AT4G34290
61 AtSHMT3; SHM3  --  has similar expression pattern (mutual information value=0.929483) with  --  EMB3108  --  has similar expression pattern (mutual information value=1.23941) with  --  PDE340
62 AtSHMT3; SHM3  --  has similar expression pattern (mutual information value=0.929483) with  --  EMB3108  --  has similar expression pattern (mutual information value=0.971257) with  --  ATFTSZ1-1; CPFTSZ; FTSZ1-1
63 AtSHMT3; SHM3  --  has similar expression pattern (mutual information value=0.929483) with  --  EMB3108  --  has similar expression pattern (mutual information value=0.917271) with  --  ATIPT9
64 AtSHMT3; SHM3  --  has similar expression pattern (mutual information value=0.929483) with  --  EMB3108  --  transport  --  meso-Tartaric acid
65 AtSHMT3; SHM3  --  has similar expression pattern (mutual information value=0.929483) with  --  EMB3108  --  transport  --  Citrate
66 AtSHMT3; SHM3  --  has similar expression pattern (mutual information value=0.839203) with  --  AtHsp90.5; CR88; EMB1956; Hsp88.1; HSP90.5  --  interacts with  --  PTAC4; VIPP1
67 AtSHMT3; SHM3  --  has similar expression pattern (mutual information value=0.839203) with  --  AtHsp90.5; CR88; EMB1956; Hsp88.1; HSP90.5  --  interacts with  --  AT4G23050
68 AtSHMT3; SHM3  --  has similar expression pattern (mutual information value=0.839203) with  --  AtHsp90.5; CR88; EMB1956; Hsp88.1; HSP90.5  --  interacts with  --  CYP40; SQN
69 AtSHMT3; SHM3  --  has similar expression pattern (mutual information value=0.839203) with  --  AtHsp90.5; CR88; EMB1956; Hsp88.1; HSP90.5  --  interacts with  --  AT1G34770
70 AtSHMT3; SHM3  --  has similar expression pattern (mutual information value=0.839203) with  --  AtHsp90.5; CR88; EMB1956; Hsp88.1; HSP90.5  --  has similar expression pattern (mutual information value=0.833191) with  --  ATWHY3; PTAC11; WHY3
71 AtSHMT3; SHM3  --  has similar expression pattern (mutual information value=0.839203) with  --  AtHsp90.5; CR88; EMB1956; Hsp88.1; HSP90.5  --  has similar expression pattern (mutual information value=1.00302) with  --  EMB1047; EMB156; EMB36; FTSH12
72 AtSHMT3; SHM3  --  has similar expression pattern (mutual information value=0.839203) with  --  AtHsp90.5; CR88; EMB1956; Hsp88.1; HSP90.5  --  has similar expression pattern (mutual information value=1.02307) with  --  OMR1
73 AtSHMT3; SHM3  --  has similar expression pattern (mutual information value=0.839203) with  --  AtHsp90.5; CR88; EMB1956; Hsp88.1; HSP90.5  --  has similar expression pattern (mutual information value=0.843164) with  --  MAR1; TOC75-III
74 AtSHMT3; SHM3  --  has similar expression pattern (mutual information value=0.839203) with  --  AtHsp90.5; CR88; EMB1956; Hsp88.1; HSP90.5  --  has similar expression pattern (mutual information value=0.904897) with  --  ADSS
75 AtSHMT3; SHM3  --  has similar expression pattern (mutual information value=0.839203) with  --  AtHsp90.5; CR88; EMB1956; Hsp88.1; HSP90.5  --  has similar expression pattern (mutual information value=0.815929) with  --  AT3G62460
76 AtSHMT3; SHM3  --  has similar expression pattern (mutual information value=0.839203) with  --  AtHsp90.5; CR88; EMB1956; Hsp88.1; HSP90.5  --  has similar expression pattern (mutual information value=0.815929) with  --  AT3G62530
77 AtSHMT3; SHM3  --  has similar expression pattern (mutual information value=0.924584) with  --  AT1G48460  --  has similar expression pattern (mutual information value=0.930163) with  --  PDE319; SCA3
78 AtSHMT3; SHM3  --  has similar expression pattern (mutual information value=0.924584) with  --  AT1G48460  --  has similar expression pattern (mutual information value=0.856976) with  --  AT1G09900
79 AtSHMT3; SHM3  --  has similar expression pattern (mutual information value=0.924584) with  --  AT1G48460  --  has similar expression pattern (mutual information value=0.908664) with  --  AT1G10522
80 AtSHMT3; SHM3  --  has similar expression pattern (mutual information value=0.924584) with  --  AT1G48460  --  has similar expression pattern (mutual information value=0.823813) with  --  AT1G71460
81 AtSHMT3; SHM3  --  has similar expression pattern (mutual information value=0.924584) with  --  AT1G48460  --  has similar expression pattern (mutual information value=0.918644) with  --  AT3G21300
82 AtSHMT3; SHM3  --  has similar expression pattern (mutual information value=0.924584) with  --  AT1G48460  --  has similar expression pattern (mutual information value=0.860566) with  --  OSB2; PTAC9
83 AtSHMT3; SHM3  --  has similar expression pattern (mutual information value=0.924584) with  --  AT1G48460  --  has similar expression pattern (mutual information value=0.925988) with  --  AT4G27340
84 AtSHMT3; SHM3  --  has similar expression pattern (mutual information value=0.924584) with  --  AT1G48460  --  has similar expression pattern (mutual information value=0.943497) with  --  FLN1
85 AtSHMT3; SHM3  --  has similar expression pattern (mutual information value=0.924584) with  --  AT1G48460  --  has similar expression pattern (mutual information value=0.815475) with  --  BPG2
86 AtSHMT3; SHM3  --  has similar expression pattern (mutual information value=0.924584) with  --  AT1G48460  --  has similar expression pattern (mutual information value=0.851882) with  --  AT5G23070
87 AtSHMT3; SHM3  --  has similar expression pattern (mutual information value=0.924584) with  --  AT1G48460  --  has similar expression pattern (mutual information value=0.805949) with  --  AT5G08400
88 AtSHMT3; SHM3  --  has similar expression pattern (mutual information value=0.871807) with  --  FLN2  --  interacts with  --  TRX P; TRX z
89 AtSHMT3; SHM3  --  has similar expression pattern (mutual information value=0.871807) with  --  FLN2  --  interacts with  --  PTAC5
90 AtSHMT3; SHM3  --  has similar expression pattern (mutual information value=0.871807) with  --  FLN2  --  has similar expression pattern (mutual information value=1.33007) with  --  AT1G06190
91 AtSHMT3; SHM3  --  has similar expression pattern (mutual information value=0.871807) with  --  FLN2  --  has similar expression pattern (mutual information value=0.889492) with  --  EMB2654
92 AtSHMT3; SHM3  --  has similar expression pattern (mutual information value=0.871807) with  --  FLN2  --  has similar expression pattern (mutual information value=0.813407) with  --  EMB1270
93 AtSHMT3; SHM3  --  has similar expression pattern (mutual information value=0.871807) with  --  FLN2  --  has similar expression pattern (mutual information value=1.02912) with  --  AT3G29230
94 AtSHMT3; SHM3  --  has similar expression pattern (mutual information value=0.871807) with  --  FLN2  --  has similar expression pattern (mutual information value=0.981139) with  --  ATKRS-2; OVA5
95 AtSHMT3; SHM3  --  has similar expression pattern (mutual information value=0.871807) with  --  FLN2  --  has similar expression pattern (mutual information value=0.840763) with  --  AT5G10910
96 AtSHMT3; SHM3  --  has similar expression pattern (mutual information value=0.871807) with  --  FLN2  --  has similar expression pattern (mutual information value=0.818252) with  --  AT5G24650
97 AtSHMT3; SHM3  --  has similar expression pattern (mutual information value=0.871807) with  --  FLN2  --  has similar expression pattern (mutual information value=0.874542) with  --  scpl42
98 AtSHMT3; SHM3  --  has similar expression pattern (mutual information value=0.837925) with  --  GYRA  --  has similar expression pattern (mutual information value=0.808948) with  --  AT1G63660
99 AtSHMT3; SHM3  --  has similar expression pattern (mutual information value=0.837925) with  --  GYRA  --  has similar expression pattern (mutual information value=0.97036) with  --  AT3G14390
100 AtSHMT3; SHM3  --  has similar expression pattern (mutual information value=0.837925) with  --  GYRA  --  has similar expression pattern (mutual information value=0.97036) with  --  AT5G11880
101 AtSHMT3; SHM3  --  has similar expression pattern (mutual information value=0.837925) with  --  GYRA  --  has similar expression pattern (mutual information value=0.969513) with  --  ATPURM; EMB2818; PUR5
102 AtSHMT3; SHM3  --  has similar expression pattern (mutual information value=0.837925) with  --  GYRA  --  has similar expression pattern (mutual information value=0.828392) with  --  AT3G58610
103 AtSHMT3; SHM3  --  has similar expression pattern (mutual information value=0.837925) with  --  GYRA  --  has similar expression pattern (mutual information value=0.897596) with  --  PYRD
104 AtSHMT3; SHM3  --  has similar expression pattern (mutual information value=0.837925) with  --  GYRA  --  has similar expression pattern (mutual information value=0.862361) with  --  AT-RAB2; ATRAB-B1B; ATRAB2A; ATRABB1C; RAB-B1B; RAB2A; RABB1C
105 AtSHMT3; SHM3  --  has similar expression pattern (mutual information value=1.00726) with  --  emb2742  --  has similar expression pattern (mutual information value=0.860849) with  --  AT1G55890
106 AtSHMT3; SHM3  --  has similar expression pattern (mutual information value=1.00726) with  --  emb2742  --  has similar expression pattern (mutual information value=0.859264) with  --  CARA; VEN6
107 AtSHMT3; SHM3  --  has similar expression pattern (mutual information value=1.00726) with  --  emb2742  --  has similar expression pattern (mutual information value=0.849909) with  --  AT1G16870
108 AtSHMT3; SHM3  --  has similar expression pattern (mutual information value=1.00726) with  --  emb2742  --  has similar expression pattern (mutual information value=0.918734) with  --  AT5G15810
109 AtSHMT3; SHM3  --  has similar expression pattern (mutual information value=1.00726) with  --  emb2742  --  has product (in catalytic reaction)  --  CTP
110 AtSHMT3; SHM3  --  has similar expression pattern (mutual information value=0.939766) with  --  AT3G57940  --  has similar expression pattern (mutual information value=0.865651) with  --  AT2G18900
111 AtSHMT3; SHM3  --  has similar expression pattern (mutual information value=0.939766) with  --  AT3G57940  --  has similar expression pattern (mutual information value=0.88733) with  --  ATPHB3; PHB3
112 AtSHMT3; SHM3  --  has similar expression pattern (mutual information value=0.849713) with  --  AT5G10920  --  has similar expression pattern (mutual information value=1.09828) with  --  AT4G13170
113 AtSHMT3; SHM3  --  has similar expression pattern (mutual information value=0.849713) with  --  AT5G10920  --  has product (in catalytic reaction)  --  L-Arginine
114 AtSHMT3; SHM3  --  has similar expression pattern (mutual information value=0.849713) with  --  AT5G10920  --  has product (in catalytic reaction)  --  Fumarate
115 AtSHMT3; SHM3  --  has similar expression pattern (mutual information value=0.858151) with  --  ATOEP80; EMB213; OEP80; TOC75-V  --  has similar expression pattern (mutual information value=0.854811) with  --  PYRR; UPP
116 AtSHMT3; SHM3  --  has similar expression pattern (mutual information value=0.858151) with  --  ATOEP80; EMB213; OEP80; TOC75-V  --  interacts with  --  AtPFA-DSP1; PFA-DSP1
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