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A Graph Search-Empowered Integrative Database of Arabidopsis Signaling Transduction, Metabolism and Gene Regulation Networks   
Location:  Home > Details for node AT2G39390
Type: Protein GRN ID: np20965 Name:
Annotation: Ribosomal L29 family protein
Gene Locus: AT2G39390
Gene Expression (Affy ATH1 probeset): 266980_at    
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 Protein modification
 Protein-protein interaction
        also include predicted relationship
 Compound-protein interaction
 TF-target gene regulation
 Small RNA-target regulation
        also include predicted relationship
 Carrier and transported molecule
 Catalytic chemical reaction
 Co-expressed gene pair
        with mutual information value >

  Ignore nodes having > relationships
 
Relationship type:  protein modification     catalytic chemical reaction     protein-protein interaction    
compound-protein interaction     TF-target gene regulation     small RNA-target regulation    
co-expressed gene pair     carrier and transported molecule     family/complex and member
Relationship evidence:  Solid line: validated          Dashed line: predicted
Relationship direction: Arrow: positive          T shape: negative          None arrow: unknown or n/a
Hormone association: Thicker line: hormone related relationship         : hormone related Node
Node type:  Transcription factor or transcriptional regulator       Compound       Kinase
 Small regulatory RNA (miRNA & ta-siRNA)       Other nodes
No. Path
2 AT2G39390  --  has similar expression pattern (mutual information value=1.02453) with  --  AT2G18740
3 AT2G39390  --  has similar expression pattern (mutual information value=0.883579) with  --  PFD1
4 AT2G39390  --  has similar expression pattern (mutual information value=1.05641) with  --  AT2G32060
5 AT2G39390  --  has similar expression pattern (mutual information value=0.96389) with  --  AT2G18400
6 AT2G39390  --  has similar expression pattern (mutual information value=1.06562) with  --  AT1G09590
7 AT2G39390  --  has similar expression pattern (mutual information value=1.06562) with  --  AT1G09690
8 AT2G39390  --  has similar expression pattern (mutual information value=1.04747) with  --  AT2G25210
9 AT2G39390  --  has similar expression pattern (mutual information value=0.979336) with  --  AT1G73940
10 AT2G39390  --  has similar expression pattern (mutual information value=0.853651) with  --  AT1G77750
11 AT2G39390  --  has similar expression pattern (mutual information value=1.08005) with  --  AT3G06700
12 AT2G39390  --  has similar expression pattern (mutual information value=0.918845) with  --  AT3G23390
13 AT2G39390  --  has similar expression pattern (mutual information value=1.0665) with  --  AT3G08520
14 AT2G39390  --  has similar expression pattern (mutual information value=1.0665) with  --  AT2G40205
15 AT2G39390  --  has similar expression pattern (mutual information value=1.0665) with  --  AT3G56020
16 AT2G39390  --  has similar expression pattern (mutual information value=1.0665) with  --  AT3G11120
17 AT2G39390  --  has similar expression pattern (mutual information value=1.02453) with  --  AT2G18740  --  interacts with  --  RUXF
18 AT2G39390  --  has similar expression pattern (mutual information value=1.02453) with  --  AT2G18740  --  interacts with  --  AT5G57860
19 AT2G39390  --  has similar expression pattern (mutual information value=1.02453) with  --  AT2G18740  --  interacts with  --  AT3G59810
20 AT2G39390  --  has similar expression pattern (mutual information value=1.02453) with  --  AT2G18740  --  has similar expression pattern (mutual information value=0.805333) with  --  AT2G45860
21 AT2G39390  --  has similar expression pattern (mutual information value=1.02453) with  --  AT2G18740  --  has similar expression pattern (mutual information value=0.828935) with  --  AT2G25670
22 AT2G39390  --  has similar expression pattern (mutual information value=1.02453) with  --  AT2G18740  --  has similar expression pattern (mutual information value=0.919876) with  --  AT1G64880
23 AT2G39390  --  has similar expression pattern (mutual information value=1.02453) with  --  AT2G18740  --  has similar expression pattern (mutual information value=0.817003) with  --  AT4G03180
24 AT2G39390  --  has similar expression pattern (mutual information value=0.883579) with  --  PFD1  --  interacts with  --  ATNAP5; NAP5
25 AT2G39390  --  has similar expression pattern (mutual information value=0.883579) with  --  PFD1  --  has similar expression pattern (mutual information value=0.843871) with  --  NRPB6B; NRPE6B
26 AT2G39390  --  has similar expression pattern (mutual information value=0.883579) with  --  PFD1  --  has similar expression pattern (mutual information value=0.83145) with  --  AT4G31985
27 AT2G39390  --  has similar expression pattern (mutual information value=0.883579) with  --  PFD1  --  has similar expression pattern (mutual information value=0.971319) with  --  AT3G59650
28 AT2G39390  --  has similar expression pattern (mutual information value=0.883579) with  --  PFD1  --  has similar expression pattern (mutual information value=0.836542) with  --  AT5G58990
29 AT2G39390  --  has similar expression pattern (mutual information value=0.883579) with  --  PFD1  --  has similar expression pattern (mutual information value=0.836542) with  --  AT5G52370
30 AT2G39390  --  has similar expression pattern (mutual information value=0.883579) with  --  PFD1  --  has similar expression pattern (mutual information value=1.07201) with  --  AT5G64670
31 AT2G39390  --  has similar expression pattern (mutual information value=1.05641) with  --  AT2G32060  --  has similar expression pattern (mutual information value=0.822822) with  --  AT2G33840
32 AT2G39390  --  has similar expression pattern (mutual information value=1.05641) with  --  AT2G32060  --  has similar expression pattern (mutual information value=0.822822) with  --  AT1G28350
33 AT2G39390  --  has similar expression pattern (mutual information value=1.05641) with  --  AT2G32060  --  has similar expression pattern (mutual information value=0.829737) with  --  AT2G27730
34 AT2G39390  --  has similar expression pattern (mutual information value=1.05641) with  --  AT2G32060  --  has similar expression pattern (mutual information value=1.0274) with  --  AT1G08580
35 AT2G39390  --  has similar expression pattern (mutual information value=1.05641) with  --  AT2G32060  --  has similar expression pattern (mutual information value=0.875633) with  --  AtTRM82; TRM82
36 AT2G39390  --  has similar expression pattern (mutual information value=1.05641) with  --  AT2G32060  --  has similar expression pattern (mutual information value=1.03676) with  --  AT3G03960
37 AT2G39390  --  has similar expression pattern (mutual information value=1.05641) with  --  AT2G32060  --  has similar expression pattern (mutual information value=0.988972) with  --  AT3G16780
38 AT2G39390  --  has similar expression pattern (mutual information value=1.05641) with  --  AT2G32060  --  has similar expression pattern (mutual information value=1.11077) with  --  AT3G12390
39 AT2G39390  --  has similar expression pattern (mutual information value=1.05641) with  --  AT2G32060  --  has similar expression pattern (mutual information value=1.09616) with  --  NFD1
40 AT2G39390  --  has similar expression pattern (mutual information value=1.05641) with  --  AT2G32060  --  has similar expression pattern (mutual information value=1.07953) with  --  AtCBF5; AtNAP57; CBF5; NAP57
41 AT2G39390  --  has similar expression pattern (mutual information value=1.05641) with  --  AT2G32060  --  has similar expression pattern (mutual information value=1.18918) with  --  AT5G47210
42 AT2G39390  --  has similar expression pattern (mutual information value=1.05641) with  --  AT2G32060  --  has similar expression pattern (mutual information value=1.25054) with  --  AT5G27330
43 AT2G39390  --  has similar expression pattern (mutual information value=0.96389) with  --  AT2G18400  --  has similar expression pattern (mutual information value=0.970154) with  --  TIM10
44 AT2G39390  --  has similar expression pattern (mutual information value=0.96389) with  --  AT2G18400  --  has similar expression pattern (mutual information value=0.91152) with  --  AT3G16080
45 AT2G39390  --  has similar expression pattern (mutual information value=0.96389) with  --  AT2G18400  --  has similar expression pattern (mutual information value=0.915682) with  --  AT1G07070
46 AT2G39390  --  has similar expression pattern (mutual information value=0.96389) with  --  AT2G18400  --  has similar expression pattern (mutual information value=0.86232) with  --  AT4G18100
47 AT2G39390  --  has similar expression pattern (mutual information value=0.96389) with  --  AT2G18400  --  has similar expression pattern (mutual information value=0.86232) with  --  AT5G46430
48 AT2G39390  --  has similar expression pattern (mutual information value=0.96389) with  --  AT2G18400  --  has similar expression pattern (mutual information value=1.0062) with  --  AT5G56710
49 AT2G39390  --  has similar expression pattern (mutual information value=1.06562) with  --  AT1G09590  --  has similar expression pattern (mutual information value=0.985364) with  --  AT2G31725
50 AT2G39390  --  has similar expression pattern (mutual information value=1.06562) with  --  AT1G09590  --  has similar expression pattern (mutual information value=1.03238) with  --  ATPRMT10; PRMT10
51 AT2G39390  --  has similar expression pattern (mutual information value=1.06562) with  --  AT1G09590  --  has similar expression pattern (mutual information value=1.22338) with  --  AT3G10090
52 AT2G39390  --  has similar expression pattern (mutual information value=1.06562) with  --  AT1G09590  --  has similar expression pattern (mutual information value=1.27373) with  --  AT4G22000
53 AT2G39390  --  has similar expression pattern (mutual information value=1.06562) with  --  AT1G09590  --  has similar expression pattern (mutual information value=1.03333) with  --  AT4G27090
54 AT2G39390  --  has similar expression pattern (mutual information value=1.06562) with  --  AT1G09590  --  has similar expression pattern (mutual information value=1.51093) with  --  AT3G60245
55 AT2G39390  --  has similar expression pattern (mutual information value=1.06562) with  --  AT1G09590  --  has similar expression pattern (mutual information value=1.02639) with  --  NACA3
56 AT2G39390  --  has similar expression pattern (mutual information value=1.06562) with  --  AT1G09590  --  has similar expression pattern (mutual information value=0.841209) with  --  AT5G44710
57 AT2G39390  --  has similar expression pattern (mutual information value=1.06562) with  --  AT1G09590  --  has similar expression pattern (mutual information value=0.843456) with  --  PSL4
58 AT2G39390  --  has similar expression pattern (mutual information value=1.06562) with  --  AT1G09590  --  has similar expression pattern (mutual information value=0.970268) with  --  AT5G57120
59 AT2G39390  --  has similar expression pattern (mutual information value=1.06562) with  --  AT1G09590  --  has similar expression pattern (mutual information value=1.12136) with  --  PNM1
60 AT2G39390  --  has similar expression pattern (mutual information value=1.06562) with  --  AT1G09590  --  has similar expression pattern (mutual information value=0.903668) with  --  AT5G16070
61 AT2G39390  --  has similar expression pattern (mutual information value=1.06562) with  --  AT1G09590  --  has similar expression pattern (mutual information value=1.00113) with  --  AT4G17520
62 AT2G39390  --  has similar expression pattern (mutual information value=1.04747) with  --  AT2G25210  --  has similar expression pattern (mutual information value=0.829061) with  --  AT2G21290
63 AT2G39390  --  has similar expression pattern (mutual information value=1.04747) with  --  AT2G25210  --  has similar expression pattern (mutual information value=1.01562) with  --  AT3G06040
64 AT2G39390  --  has similar expression pattern (mutual information value=1.04747) with  --  AT2G25210  --  has similar expression pattern (mutual information value=1.02913) with  --  emb2474; TIM9
65 AT2G39390  --  has similar expression pattern (mutual information value=1.04747) with  --  AT2G25210  --  has similar expression pattern (mutual information value=0.844378) with  --  AT3G49100
66 AT2G39390  --  has similar expression pattern (mutual information value=1.04747) with  --  AT2G25210  --  has similar expression pattern (mutual information value=1.05455) with  --  AT5G62440
67 AT2G39390  --  has similar expression pattern (mutual information value=0.979336) with  --  AT1G73940  --  has similar expression pattern (mutual information value=0.936185) with  --  AT2G19730
68 AT2G39390  --  has similar expression pattern (mutual information value=0.979336) with  --  AT1G73940  --  has similar expression pattern (mutual information value=1.12552) with  --  AT1G23100
69 AT2G39390  --  has similar expression pattern (mutual information value=0.979336) with  --  AT1G73940  --  has similar expression pattern (mutual information value=0.857657) with  --  AT3G02650
70 AT2G39390  --  has similar expression pattern (mutual information value=0.979336) with  --  AT1G73940  --  has similar expression pattern (mutual information value=0.984855) with  --  ATTCP-1; TCP-1
71 AT2G39390  --  has similar expression pattern (mutual information value=0.979336) with  --  AT1G73940  --  has similar expression pattern (mutual information value=1.12407) with  --  AT4G05400
72 AT2G39390  --  has similar expression pattern (mutual information value=0.979336) with  --  AT1G73940  --  has similar expression pattern (mutual information value=1.108) with  --  AT4G23620
73 AT2G39390  --  has similar expression pattern (mutual information value=0.979336) with  --  AT1G73940  --  has similar expression pattern (mutual information value=0.948671) with  --  AT5G46160
74 AT2G39390  --  has similar expression pattern (mutual information value=0.853651) with  --  AT1G77750  --  has similar expression pattern (mutual information value=1.0277) with  --  AT1G27435
75 AT2G39390  --  has similar expression pattern (mutual information value=0.853651) with  --  AT1G77750  --  has similar expression pattern (mutual information value=0.809489) with  --  AT1G22520
76 AT2G39390  --  has similar expression pattern (mutual information value=0.918845) with  --  AT3G23390  --  interacts with  --  IAA11
77 AT2G39390  --  has similar expression pattern (mutual information value=0.918845) with  --  AT3G23390  --  interacts with  --  ATCSP3; CSP3
78 AT2G39390  --  has similar expression pattern (mutual information value=0.918845) with  --  AT3G23390  --  has similar expression pattern (mutual information value=1.15898) with  --  AT3G05560
79 AT2G39390  --  has similar expression pattern (mutual information value=0.918845) with  --  AT3G23390  --  has similar expression pattern (mutual information value=0.923815) with  --  RPL18
80 AT2G39390  --  has similar expression pattern (mutual information value=0.918845) with  --  AT3G23390  --  has similar expression pattern (mutual information value=1.23778) with  --  AT3G06680
81 AT2G39390  --  has similar expression pattern (mutual information value=0.918845) with  --  AT3G23390  --  has similar expression pattern (mutual information value=1.08171) with  --  AT3G44590
82 AT2G39390  --  has similar expression pattern (mutual information value=0.918845) with  --  AT3G23390  --  has similar expression pattern (mutual information value=1.27508) with  --  AT5G03850
83 AT2G39390  --  has similar expression pattern (mutual information value=0.918845) with  --  AT3G23390  --  has similar expression pattern (mutual information value=0.994091) with  --  TIM8
84 AT2G39390  --  has similar expression pattern (mutual information value=0.918845) with  --  AT3G23390  --  has similar expression pattern (mutual information value=1.11526) with  --  AT5G27770
85 AT2G39390  --  has similar expression pattern (mutual information value=0.918845) with  --  AT3G23390  --  has similar expression pattern (mutual information value=1.22586) with  --  AT5G09510
86 AT2G39390  --  has similar expression pattern (mutual information value=1.0665) with  --  AT3G11120  --  is the target gene of  --  ath-miR831
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