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A Graph Search-Empowered Integrative Database of Arabidopsis Signaling Transduction, Metabolism and Gene Regulation Networks   
Location:  Home > Details for node SDN3
Type: Protein GRN ID: np41783 Name: SDN3
Annotation: SDN3 | small RNA degrading nuclease 3
Gene Locus: AT5G67240
Gene Expression (Affy ATH1 probeset): 247032_at    
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 Protein modification
 Protein-protein interaction
        also include predicted relationship
 Compound-protein interaction
 TF-target gene regulation
 Small RNA-target regulation
        also include predicted relationship
 Carrier and transported molecule
 Catalytic chemical reaction
 Co-expressed gene pair
        with mutual information value >

  Ignore nodes having > relationships
 
Relationship type:  protein modification     catalytic chemical reaction     protein-protein interaction    
compound-protein interaction     TF-target gene regulation     small RNA-target regulation    
co-expressed gene pair     carrier and transported molecule     family/complex and member
Relationship evidence:  Solid line: validated          Dashed line: predicted
Relationship direction: Arrow: positive          T shape: negative          None arrow: unknown or n/a
Hormone association: Thicker line: hormone related relationship         : hormone related Node
Node type:  Transcription factor or transcriptional regulator       Compound       Kinase
 Small regulatory RNA (miRNA & ta-siRNA)       Other nodes
No. Path
2 SDN3  --  is the target gene of  --  ath-miR4239
3 SDN3  --  has similar expression pattern (mutual information value=0.911464) with  --  AT2G34357
4 SDN3  --  has similar expression pattern (mutual information value=0.909486) with  --  EDA13; EDA19; SWA1
5 SDN3  --  has similar expression pattern (mutual information value=0.910641) with  --  AT2G25670
6 SDN3  --  has similar expression pattern (mutual information value=0.96791) with  --  AT3G01160
7 SDN3  --  has similar expression pattern (mutual information value=0.901343) with  --  AT3G02760
8 SDN3  --  has similar expression pattern (mutual information value=0.883776) with  --  ATRBP47B; RBP47B
9 SDN3  --  has similar expression pattern (mutual information value=0.939985) with  --  AT4G25730
10 SDN3  --  has similar expression pattern (mutual information value=0.844441) with  --  AT4G25210
11 SDN3  --  has similar expression pattern (mutual information value=1.08974) with  --  AT5G50310
12 SDN3  --  has similar expression pattern (mutual information value=0.98558) with  --  AT5G57120
13 SDN3  --  has similar expression pattern (mutual information value=0.98979) with  --  PNM1
14 SDN3  --  has similar expression pattern (mutual information value=1.01984) with  --  AT5G20600
15 SDN3  --  is the target gene of  --  ath-miR4239  --  inhibit the expression of  --  AT5G29635
16 SDN3  --  is the target gene of  --  ath-miR4239  --  inhibit the expression of  --  AT5G14860
17 SDN3  --  is the target gene of  --  ath-miR4239  --  inhibit the expression of  --  AT3G43610
18 SDN3  --  is the target gene of  --  ath-miR4239  --  inhibit the expression of  --  NCRK
19 SDN3  --  has similar expression pattern (mutual information value=0.911464) with  --  AT2G34357  --  has similar expression pattern (mutual information value=0.964201) with  --  ATNAF1; NAF1
20 SDN3  --  has similar expression pattern (mutual information value=0.911464) with  --  AT2G34357  --  has similar expression pattern (mutual information value=1.0143) with  --  AT2G40430
21 SDN3  --  has similar expression pattern (mutual information value=0.911464) with  --  AT2G34357  --  has similar expression pattern (mutual information value=0.992377) with  --  AT1G13160
22 SDN3  --  has similar expression pattern (mutual information value=0.911464) with  --  AT2G34357  --  has similar expression pattern (mutual information value=1.12237) with  --  ATPRMT10; PRMT10
23 SDN3  --  has similar expression pattern (mutual information value=0.911464) with  --  AT2G34357  --  has similar expression pattern (mutual information value=0.937785) with  --  NFD5
24 SDN3  --  has similar expression pattern (mutual information value=0.911464) with  --  AT2G34357  --  has similar expression pattern (mutual information value=1.08496) with  --  EMB2777
25 SDN3  --  has similar expression pattern (mutual information value=0.911464) with  --  AT2G34357  --  has similar expression pattern (mutual information value=0.983224) with  --  ATKRS-1
26 SDN3  --  has similar expression pattern (mutual information value=0.911464) with  --  AT2G34357  --  has similar expression pattern (mutual information value=0.886672) with  --  AT3G52170
27 SDN3  --  has similar expression pattern (mutual information value=0.911464) with  --  AT2G34357  --  has similar expression pattern (mutual information value=1.17506) with  --  emb1796
28 SDN3  --  has similar expression pattern (mutual information value=0.911464) with  --  AT2G34357  --  has similar expression pattern (mutual information value=0.858743) with  --  AT5G35910
29 SDN3  --  has similar expression pattern (mutual information value=0.911464) with  --  AT2G34357  --  has similar expression pattern (mutual information value=0.826154) with  --  EMB3012
30 SDN3  --  has similar expression pattern (mutual information value=0.911464) with  --  AT2G34357  --  has similar expression pattern (mutual information value=0.811512) with  --  AT4G16630
31 SDN3  --  has similar expression pattern (mutual information value=0.909486) with  --  EDA13; EDA19; SWA1  --  transport  --  Selenite
32 SDN3  --  has similar expression pattern (mutual information value=0.909486) with  --  EDA13; EDA19; SWA1  --  has similar expression pattern (mutual information value=0.886127) with  --  AT2G32220
33 SDN3  --  has similar expression pattern (mutual information value=0.909486) with  --  EDA13; EDA19; SWA1  --  has similar expression pattern (mutual information value=0.896217) with  --  AT2G17670
34 SDN3  --  has similar expression pattern (mutual information value=0.909486) with  --  EDA13; EDA19; SWA1  --  has similar expression pattern (mutual information value=1.01672) with  --  AT1G79470
35 SDN3  --  has similar expression pattern (mutual information value=0.909486) with  --  EDA13; EDA19; SWA1  --  has similar expression pattern (mutual information value=0.958824) with  --  AT1G53560
36 SDN3  --  has similar expression pattern (mutual information value=0.909486) with  --  EDA13; EDA19; SWA1  --  has similar expression pattern (mutual information value=0.956198) with  --  AT3G05130
37 SDN3  --  has similar expression pattern (mutual information value=0.909486) with  --  EDA13; EDA19; SWA1  --  has similar expression pattern (mutual information value=1.00864) with  --  HSP60; HSP60-3B
38 SDN3  --  has similar expression pattern (mutual information value=0.909486) with  --  EDA13; EDA19; SWA1  --  has similar expression pattern (mutual information value=0.942994) with  --  AT5G54910
39 SDN3  --  has similar expression pattern (mutual information value=0.909486) with  --  EDA13; EDA19; SWA1  --  has similar expression pattern (mutual information value=0.954188) with  --  OLI2
40 SDN3  --  has similar expression pattern (mutual information value=0.909486) with  --  EDA13; EDA19; SWA1  --  has similar expression pattern (mutual information value=1.08179) with  --  AT5G19300
41 SDN3  --  has similar expression pattern (mutual information value=0.910641) with  --  AT2G25670  --  has similar expression pattern (mutual information value=0.928313) with  --  ATCSN2; COP12; CSN2; FUS12
42 SDN3  --  has similar expression pattern (mutual information value=0.910641) with  --  AT2G25670  --  has similar expression pattern (mutual information value=0.828935) with  --  AT2G18740
43 SDN3  --  has similar expression pattern (mutual information value=0.910641) with  --  AT2G25670  --  has similar expression pattern (mutual information value=0.89318) with  --  AT2G21290
44 SDN3  --  has similar expression pattern (mutual information value=0.910641) with  --  AT2G25670  --  has similar expression pattern (mutual information value=0.903949) with  --  AT2G25210
45 SDN3  --  has similar expression pattern (mutual information value=0.910641) with  --  AT2G25670  --  has similar expression pattern (mutual information value=0.812552) with  --  ATDSS1(I); DSS1(I)
46 SDN3  --  has similar expression pattern (mutual information value=0.910641) with  --  AT2G25670  --  has similar expression pattern (mutual information value=0.811771) with  --  SYNC3
47 SDN3  --  has similar expression pattern (mutual information value=0.910641) with  --  AT2G25670  --  has similar expression pattern (mutual information value=0.811771) with  --  EMB2755; SYNC1; SYNC1 ARATH
48 SDN3  --  has similar expression pattern (mutual information value=0.910641) with  --  AT2G25670  --  has similar expression pattern (mutual information value=0.810898) with  --  AT3G03420
49 SDN3  --  has similar expression pattern (mutual information value=0.910641) with  --  AT2G25670  --  has similar expression pattern (mutual information value=0.887249) with  --  AT4G03180
50 SDN3  --  has similar expression pattern (mutual information value=0.910641) with  --  AT2G25670  --  has similar expression pattern (mutual information value=0.897996) with  --  AT4G07950
51 SDN3  --  has similar expression pattern (mutual information value=0.910641) with  --  AT2G25670  --  has similar expression pattern (mutual information value=0.897996) with  --  AT1G01210
52 SDN3  --  has similar expression pattern (mutual information value=0.910641) with  --  AT2G25670  --  has similar expression pattern (mutual information value=0.806248) with  --  AT5G05210
53 SDN3  --  has similar expression pattern (mutual information value=0.910641) with  --  AT2G25670  --  has similar expression pattern (mutual information value=0.963472) with  --  AT5G64670
54 SDN3  --  has similar expression pattern (mutual information value=0.96791) with  --  AT3G01160  --  has similar expression pattern (mutual information value=0.819102) with  --  HEN2
55 SDN3  --  has similar expression pattern (mutual information value=0.96791) with  --  AT3G01160  --  has similar expression pattern (mutual information value=0.91287) with  --  AAC42; ATRPAC42
56 SDN3  --  has similar expression pattern (mutual information value=0.96791) with  --  AT3G01160  --  has similar expression pattern (mutual information value=0.931631) with  --  AT3G22660
57 SDN3  --  has similar expression pattern (mutual information value=0.96791) with  --  AT3G01160  --  has similar expression pattern (mutual information value=0.865592) with  --  AT3G15080
58 SDN3  --  has similar expression pattern (mutual information value=0.96791) with  --  AT3G01160  --  has similar expression pattern (mutual information value=1.01765) with  --  AT4G02400
59 SDN3  --  has similar expression pattern (mutual information value=0.96791) with  --  AT3G01160  --  has similar expression pattern (mutual information value=0.990235) with  --  NRPA1
60 SDN3  --  has similar expression pattern (mutual information value=0.96791) with  --  AT3G01160  --  has similar expression pattern (mutual information value=0.920189) with  --  AT5G06110
61 SDN3  --  has similar expression pattern (mutual information value=0.96791) with  --  AT3G01160  --  has similar expression pattern (mutual information value=0.842135) with  --  AT5G17930
62 SDN3  --  has similar expression pattern (mutual information value=0.901343) with  --  AT3G02760  --  has similar expression pattern (mutual information value=0.939673) with  --  AT2G33840
63 SDN3  --  has similar expression pattern (mutual information value=0.901343) with  --  AT3G02760  --  has similar expression pattern (mutual information value=0.939673) with  --  AT1G28350
64 SDN3  --  has similar expression pattern (mutual information value=0.901343) with  --  AT3G02760  --  has similar expression pattern (mutual information value=0.835627) with  --  RIP3
65 SDN3  --  has similar expression pattern (mutual information value=0.901343) with  --  AT3G02760  --  has similar expression pattern (mutual information value=0.943233) with  --  AT3G58840
66 SDN3  --  has similar expression pattern (mutual information value=0.901343) with  --  AT3G02760  --  has similar expression pattern (mutual information value=0.927914) with  --  NACA3
67 SDN3  --  has similar expression pattern (mutual information value=0.901343) with  --  AT3G02760  --  has similar expression pattern (mutual information value=0.872898) with  --  PSL4
68 SDN3  --  has similar expression pattern (mutual information value=0.901343) with  --  AT3G02760  --  has product (in catalytic reaction)  --  L-Histidyl-tRNA(His)
69 SDN3  --  has similar expression pattern (mutual information value=0.883776) with  --  ATRBP47B; RBP47B  --  has similar expression pattern (mutual information value=0.810661) with  --  AT2G21185
70 SDN3  --  has similar expression pattern (mutual information value=0.883776) with  --  ATRBP47B; RBP47B  --  has similar expression pattern (mutual information value=0.800968) with  --  ATFKBP62; FKBP62; ROF1
71 SDN3  --  has similar expression pattern (mutual information value=0.844441) with  --  AT4G25210  --  has similar expression pattern (mutual information value=0.805198) with  --  AT4G22350
72 SDN3  --  has similar expression pattern (mutual information value=0.844441) with  --  AT4G25210  --  has similar expression pattern (mutual information value=0.805198) with  --  AT4G22285
73 SDN3  --  has similar expression pattern (mutual information value=0.844441) with  --  AT4G25210  --  is the target gene of  --  ath-miR864-3p
74 SDN3  --  has similar expression pattern (mutual information value=1.08974) with  --  AT5G50310  --  has similar expression pattern (mutual information value=0.835228) with  --  AT1G64880
75 SDN3  --  has similar expression pattern (mutual information value=0.98558) with  --  AT5G57120  --  has similar expression pattern (mutual information value=1.17291) with  --  AT2G18520
76 SDN3  --  has similar expression pattern (mutual information value=0.98558) with  --  AT5G57120  --  has similar expression pattern (mutual information value=0.970268) with  --  AT1G09590
77 SDN3  --  has similar expression pattern (mutual information value=0.98558) with  --  AT5G57120  --  has similar expression pattern (mutual information value=0.970268) with  --  AT1G09690
78 SDN3  --  has similar expression pattern (mutual information value=0.98558) with  --  AT5G57120  --  has similar expression pattern (mutual information value=0.970564) with  --  AT1G09660
79 SDN3  --  has similar expression pattern (mutual information value=0.98558) with  --  AT5G57120  --  has similar expression pattern (mutual information value=0.919329) with  --  AT1G79200
80 SDN3  --  has similar expression pattern (mutual information value=0.98558) with  --  AT5G57120  --  has similar expression pattern (mutual information value=1.09412) with  --  AT2G31725
81 SDN3  --  has similar expression pattern (mutual information value=0.98558) with  --  AT5G57120  --  has similar expression pattern (mutual information value=0.846316) with  --  AT1G06530
82 SDN3  --  has similar expression pattern (mutual information value=0.98558) with  --  AT5G57120  --  has similar expression pattern (mutual information value=0.950668) with  --  ATRBP47C; RBP47C
83 SDN3  --  has similar expression pattern (mutual information value=0.98558) with  --  AT5G57120  --  has similar expression pattern (mutual information value=0.950668) with  --  ATRBP47C'; RBP47C'
84 SDN3  --  has similar expression pattern (mutual information value=0.98558) with  --  AT5G57120  --  has similar expression pattern (mutual information value=0.826851) with  --  AT1G63980
85 SDN3  --  has similar expression pattern (mutual information value=0.98558) with  --  AT5G57120  --  has similar expression pattern (mutual information value=1.17357) with  --  CDC48C; emb1354
86 SDN3  --  has similar expression pattern (mutual information value=0.98558) with  --  AT5G57120  --  has similar expression pattern (mutual information value=0.887988) with  --  AT3G19360
87 SDN3  --  has similar expression pattern (mutual information value=0.98558) with  --  AT5G57120  --  has similar expression pattern (mutual information value=0.913281) with  --  HAT3.1
88 SDN3  --  has similar expression pattern (mutual information value=0.98558) with  --  AT5G57120  --  has similar expression pattern (mutual information value=0.882841) with  --  VIL1; VRN5
89 SDN3  --  has similar expression pattern (mutual information value=0.98558) with  --  AT5G57120  --  has similar expression pattern (mutual information value=0.983348) with  --  AT3G66652
90 SDN3  --  has similar expression pattern (mutual information value=0.98558) with  --  AT5G57120  --  has similar expression pattern (mutual information value=0.994594) with  --  AT3G12340
91 SDN3  --  has similar expression pattern (mutual information value=0.98558) with  --  AT5G57120  --  has similar expression pattern (mutual information value=0.945101) with  --  AT4G01990
92 SDN3  --  has similar expression pattern (mutual information value=0.98558) with  --  AT5G57120  --  has similar expression pattern (mutual information value=1.0424) with  --  AT4G22000
93 SDN3  --  has similar expression pattern (mutual information value=0.98558) with  --  AT5G57120  --  has similar expression pattern (mutual information value=0.858052) with  --  AT4G22720
94 SDN3  --  has similar expression pattern (mutual information value=0.98558) with  --  AT5G57120  --  has similar expression pattern (mutual information value=0.936556) with  --  AT4G39160
95 SDN3  --  has similar expression pattern (mutual information value=0.98558) with  --  AT5G57120  --  has similar expression pattern (mutual information value=0.884001) with  --  AT3G60040
96 SDN3  --  has similar expression pattern (mutual information value=0.98558) with  --  AT5G57120  --  has similar expression pattern (mutual information value=0.884001) with  --  AT3G60050
97 SDN3  --  has similar expression pattern (mutual information value=0.98558) with  --  AT5G57120  --  has similar expression pattern (mutual information value=0.918353) with  --  AT5G11310
98 SDN3  --  has similar expression pattern (mutual information value=0.98558) with  --  AT5G57120  --  has similar expression pattern (mutual information value=0.952332) with  --  ABO1; AtELP1; ELO2
99 SDN3  --  has similar expression pattern (mutual information value=0.98558) with  --  AT5G57120  --  has similar expression pattern (mutual information value=0.987895) with  --  AT5G14440
100 SDN3  --  has similar expression pattern (mutual information value=0.98558) with  --  AT5G57120  --  has similar expression pattern (mutual information value=0.90449) with  --  AT5G18950
101 SDN3  --  has similar expression pattern (mutual information value=0.98558) with  --  AT5G57120  --  has similar expression pattern (mutual information value=1.06708) with  --  AT5G42060
102 SDN3  --  has similar expression pattern (mutual information value=0.98558) with  --  AT5G57120  --  has similar expression pattern (mutual information value=0.834053) with  --  NRPC1
103 SDN3  --  has similar expression pattern (mutual information value=0.98558) with  --  AT5G57120  --  has similar expression pattern (mutual information value=1.04059) with  --  AT5G61310
104 SDN3  --  has similar expression pattern (mutual information value=0.98558) with  --  AT5G57120  --  has similar expression pattern (mutual information value=0.980502) with  --  AT5G04320
105 SDN3  --  has similar expression pattern (mutual information value=0.98558) with  --  AT5G57120  --  interacts with  --  IMPA-2
106 SDN3  --  has similar expression pattern (mutual information value=0.98979) with  --  PNM1  --  interacts with  --  TCP8
107 SDN3  --  has similar expression pattern (mutual information value=0.98979) with  --  PNM1  --  interacts with  --  GRL; NAP1; NAPP
108 SDN3  --  has similar expression pattern (mutual information value=0.98979) with  --  PNM1  --  has similar expression pattern (mutual information value=0.857038) with  --  AtDBP1; DBP1
109 SDN3  --  has similar expression pattern (mutual information value=0.98979) with  --  PNM1  --  has similar expression pattern (mutual information value=1.1133) with  --  AT2G20710
110 SDN3  --  has similar expression pattern (mutual information value=0.98979) with  --  PNM1  --  has similar expression pattern (mutual information value=1.15281) with  --  AT1G60770
111 SDN3  --  has similar expression pattern (mutual information value=0.98979) with  --  PNM1  --  has similar expression pattern (mutual information value=0.864268) with  --  AT2G22100
112 SDN3  --  has similar expression pattern (mutual information value=0.98979) with  --  PNM1  --  has similar expression pattern (mutual information value=0.918521) with  --  MEE67
113 SDN3  --  has similar expression pattern (mutual information value=0.98979) with  --  PNM1  --  has similar expression pattern (mutual information value=0.918521) with  --  AT1G18320
114 SDN3  --  has similar expression pattern (mutual information value=0.98979) with  --  PNM1  --  has similar expression pattern (mutual information value=0.809818) with  --  AT1G73180
115 SDN3  --  has similar expression pattern (mutual information value=0.98979) with  --  PNM1  --  has similar expression pattern (mutual information value=0.895224) with  --  AT3G02650
116 SDN3  --  has similar expression pattern (mutual information value=0.98979) with  --  PNM1  --  has similar expression pattern (mutual information value=0.933345) with  --  ATTCP-1; TCP-1
117 SDN3  --  has similar expression pattern (mutual information value=0.98979) with  --  PNM1  --  has similar expression pattern (mutual information value=1.04326) with  --  ATPURC; PUR7; PURC
118 SDN3  --  has similar expression pattern (mutual information value=0.98979) with  --  PNM1  --  has similar expression pattern (mutual information value=1.19314) with  --  AT4G05400
119 SDN3  --  has similar expression pattern (mutual information value=0.98979) with  --  PNM1  --  has similar expression pattern (mutual information value=1.03477) with  --  AT-HF; HISN4
120 SDN3  --  has similar expression pattern (mutual information value=0.98979) with  --  PNM1  --  has similar expression pattern (mutual information value=1.00462) with  --  AT4G31810
121 SDN3  --  has similar expression pattern (mutual information value=0.98979) with  --  PNM1  --  has similar expression pattern (mutual information value=1.08209) with  --  AT5G52380
122 SDN3  --  has similar expression pattern (mutual information value=0.98979) with  --  PNM1  --  has similar expression pattern (mutual information value=1.17287) with  --  AT5G62440
123 SDN3  --  has similar expression pattern (mutual information value=1.01984) with  --  AT5G20600  --  has similar expression pattern (mutual information value=1.04672) with  --  GTE01; GTE1; IMB1
124 SDN3  --  has similar expression pattern (mutual information value=1.01984) with  --  AT5G20600  --  has similar expression pattern (mutual information value=0.91653) with  --  AT5G61880
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