Screen Resolution:     
Welcome to HRGRN
A Graph Search-Empowered Integrative Database of Arabidopsis Signaling Transduction, Metabolism and Gene Regulation Networks   
Location:  Home > Details for node AT1G53560
Type: Protein GRN ID: np15925 Name:
Annotation: Ribosomal protein L18ae family
Gene Locus: AT1G53560
Gene Expression (Affy ATH1 probeset): 260983_at    
Graph Customization
   
Choose color for highlight:  
Display edge: validated and predicted
Display node/edge prompt:
Layout:
 as format     
Data Filter
 Protein modification
 Protein-protein interaction
        also include predicted relationship
 Compound-protein interaction
 TF-target gene regulation
 Small RNA-target regulation
        also include predicted relationship
 Carrier and transported molecule
 Catalytic chemical reaction
 Co-expressed gene pair
        with mutual information value >

  Ignore nodes having > relationships
 
Relationship type:  protein modification     catalytic chemical reaction     protein-protein interaction    
compound-protein interaction     TF-target gene regulation     small RNA-target regulation    
co-expressed gene pair     carrier and transported molecule     family/complex and member
Relationship evidence:  Solid line: validated          Dashed line: predicted
Relationship direction: Arrow: positive          T shape: negative          None arrow: unknown or n/a
Hormone association: Thicker line: hormone related relationship         : hormone related Node
Node type:  Transcription factor or transcriptional regulator       Compound       Kinase
 Small regulatory RNA (miRNA & ta-siRNA)       Other nodes
No. Path
2 AT1G53560  --  has similar expression pattern (mutual information value=0.958824) with  --  EDA13; EDA19; SWA1
3 AT1G53560  --  has similar expression pattern (mutual information value=0.829919) with  --  ATBBD1; BBD1
4 AT1G53560  --  has similar expression pattern (mutual information value=0.943226) with  --  AT3G51730
5 AT1G53560  --  has similar expression pattern (mutual information value=0.875468) with  --  AALP; ALP; SAG2
6 AT1G53560  --  has similar expression pattern (mutual information value=0.949517) with  --  AT4G16190
7 AT1G53560  --  has similar expression pattern (mutual information value=0.958824) with  --  EDA13; EDA19; SWA1  --  transport  --  Selenite
8 AT1G53560  --  has similar expression pattern (mutual information value=0.958824) with  --  EDA13; EDA19; SWA1  --  has similar expression pattern (mutual information value=0.886127) with  --  AT2G32220
9 AT1G53560  --  has similar expression pattern (mutual information value=0.958824) with  --  EDA13; EDA19; SWA1  --  has similar expression pattern (mutual information value=0.896217) with  --  AT2G17670
10 AT1G53560  --  has similar expression pattern (mutual information value=0.958824) with  --  EDA13; EDA19; SWA1  --  has similar expression pattern (mutual information value=1.01672) with  --  AT1G79470
11 AT1G53560  --  has similar expression pattern (mutual information value=0.958824) with  --  EDA13; EDA19; SWA1  --  has similar expression pattern (mutual information value=0.956198) with  --  AT3G05130
12 AT1G53560  --  has similar expression pattern (mutual information value=0.958824) with  --  EDA13; EDA19; SWA1  --  has similar expression pattern (mutual information value=0.946737) with  --  ATRBP47B; RBP47B
13 AT1G53560  --  has similar expression pattern (mutual information value=0.958824) with  --  EDA13; EDA19; SWA1  --  has similar expression pattern (mutual information value=1.00864) with  --  HSP60; HSP60-3B
14 AT1G53560  --  has similar expression pattern (mutual information value=0.958824) with  --  EDA13; EDA19; SWA1  --  has similar expression pattern (mutual information value=1.22863) with  --  emb1796
15 AT1G53560  --  has similar expression pattern (mutual information value=0.958824) with  --  EDA13; EDA19; SWA1  --  has similar expression pattern (mutual information value=0.942994) with  --  AT5G54910
16 AT1G53560  --  has similar expression pattern (mutual information value=0.958824) with  --  EDA13; EDA19; SWA1  --  has similar expression pattern (mutual information value=0.954188) with  --  OLI2
17 AT1G53560  --  has similar expression pattern (mutual information value=0.958824) with  --  EDA13; EDA19; SWA1  --  has similar expression pattern (mutual information value=1.29822) with  --  PNM1
18 AT1G53560  --  has similar expression pattern (mutual information value=0.958824) with  --  EDA13; EDA19; SWA1  --  has similar expression pattern (mutual information value=0.909486) with  --  SDN3
19 AT1G53560  --  has similar expression pattern (mutual information value=0.958824) with  --  EDA13; EDA19; SWA1  --  has similar expression pattern (mutual information value=1.08179) with  --  AT5G19300
20 AT1G53560  --  has similar expression pattern (mutual information value=0.829919) with  --  ATBBD1; BBD1  --  interacts with  --  AT5G40670
21 AT1G53560  --  has similar expression pattern (mutual information value=0.829919) with  --  ATBBD1; BBD1  --  has similar expression pattern (mutual information value=0.860188) with  --  AGT; AGT1; SGAT
22 AT1G53560  --  has similar expression pattern (mutual information value=0.829919) with  --  ATBBD1; BBD1  --  has similar expression pattern (mutual information value=0.858728) with  --  AT1G13160
23 AT1G53560  --  has similar expression pattern (mutual information value=0.829919) with  --  ATBBD1; BBD1  --  has similar expression pattern (mutual information value=0.871774) with  --  ATCXXS1; CXXS1
24 AT1G53560  --  has similar expression pattern (mutual information value=0.829919) with  --  ATBBD1; BBD1  --  has similar expression pattern (mutual information value=0.804248) with  --  ATKRS-1
25 AT1G53560  --  has similar expression pattern (mutual information value=0.829919) with  --  ATBBD1; BBD1  --  has similar expression pattern (mutual information value=0.867092) with  --  AT3G03150
26 AT1G53560  --  has similar expression pattern (mutual information value=0.829919) with  --  ATBBD1; BBD1  --  has similar expression pattern (mutual information value=0.866021) with  --  CCL
27 AT1G53560  --  has similar expression pattern (mutual information value=0.829919) with  --  ATBBD1; BBD1  --  has similar expression pattern (mutual information value=0.994656) with  --  AT1G55000
28 AT1G53560  --  has similar expression pattern (mutual information value=0.829919) with  --  ATBBD1; BBD1  --  has similar expression pattern (mutual information value=1.03214) with  --  AT1G56220
29 AT1G53560  --  has similar expression pattern (mutual information value=0.829919) with  --  ATBBD1; BBD1  --  has similar expression pattern (mutual information value=0.873993) with  --  AILP1; ATAILP1
30 AT1G53560  --  has similar expression pattern (mutual information value=0.943226) with  --  AT3G51730  --  has similar expression pattern (mutual information value=0.881007) with  --  AT2G40420
31 AT1G53560  --  has similar expression pattern (mutual information value=0.943226) with  --  AT3G51730  --  has similar expression pattern (mutual information value=0.874883) with  --  AT1G64880
32 AT1G53560  --  has similar expression pattern (mutual information value=0.943226) with  --  AT3G51730  --  has similar expression pattern (mutual information value=0.98253) with  --  AT4G35750
33 AT1G53560  --  has similar expression pattern (mutual information value=0.943226) with  --  AT3G51730  --  has similar expression pattern (mutual information value=0.858617) with  --  RD19; RD19A
34 AT1G53560  --  has similar expression pattern (mutual information value=0.943226) with  --  AT3G51730  --  has similar expression pattern (mutual information value=0.81353) with  --  AT1G28260
35 AT1G53560  --  has similar expression pattern (mutual information value=0.943226) with  --  AT3G51730  --  transport  --  Polypeptide
36 AT1G53560  --  has similar expression pattern (mutual information value=0.875468) with  --  AALP; ALP; SAG2  --  interacts with  --  ATELP; ATELP1; ATVSR1; BP-80; BP80; BP80-1;1; BP80B; GFS1; VSR1; VSR1;1
37 AT1G53560  --  has similar expression pattern (mutual information value=0.949517) with  --  AT4G16190  --  interacts with  --  AAP5
38 AT1G53560  --  has similar expression pattern (mutual information value=0.949517) with  --  AT4G16190  --  has similar expression pattern (mutual information value=0.901171) with  --  AT1G07040
   Funding by the National Science Foundation    Funding by the Oklahoma Center for the Advancement of Science & Technology    Additional funding by the Samuel Roberts Noble Foundation

Copyright © The Zhao Lab

Disclaimer | Contact