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A Graph Search-Empowered Integrative Database of Arabidopsis Signaling Transduction, Metabolism and Gene Regulation Networks   
Location:  Home > Details for node AT5G20600
Type: Protein GRN ID: np41468 Name:
Annotation: FUNCTIONS IN: molecular_function unknown; INVOLVED IN: rRNA processing; LOCATED IN: preribosome, small subunit precursor; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleolar, Nop52 (InterPro:IPR010301); Has 543 Blast hits to 530 proteins in 201 species: Archae - 0; Bacteria - 10; Metazoa - 211; Fungi - 164; Plants - 46; Viruses - 0; Other Eukaryotes - 112 (source: NCBI BLink).
Gene Locus: AT5G20600
Gene Expression (Affy ATH1 probeset): 246088_at    
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 Protein modification
 Protein-protein interaction
        also include predicted relationship
 Compound-protein interaction
 TF-target gene regulation
 Small RNA-target regulation
        also include predicted relationship
 Carrier and transported molecule
 Catalytic chemical reaction
 Co-expressed gene pair
        with mutual information value >

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Relationship type:  protein modification     catalytic chemical reaction     protein-protein interaction    
compound-protein interaction     TF-target gene regulation     small RNA-target regulation    
co-expressed gene pair     carrier and transported molecule     family/complex and member
Relationship evidence:  Solid line: validated          Dashed line: predicted
Relationship direction: Arrow: positive          T shape: negative          None arrow: unknown or n/a
Hormone association: Thicker line: hormone related relationship         : hormone related Node
Node type:  Transcription factor or transcriptional regulator       Compound       Kinase
 Small regulatory RNA (miRNA & ta-siRNA)       Other nodes
No. Path
2 AT5G20600  --  has similar expression pattern (mutual information value=0.958887) with  --  ATCSN2; COP12; CSN2; FUS12
3 AT5G20600  --  has similar expression pattern (mutual information value=0.895698) with  --  AT3G02760
4 AT5G20600  --  has similar expression pattern (mutual information value=1.04672) with  --  GTE01; GTE1; IMB1
5 AT5G20600  --  has similar expression pattern (mutual information value=0.829907) with  --  ATRBP47B; RBP47B
6 AT5G20600  --  has similar expression pattern (mutual information value=0.91653) with  --  AT5G61880
7 AT5G20600  --  has similar expression pattern (mutual information value=1.01984) with  --  SDN3
8 AT5G20600  --  has similar expression pattern (mutual information value=0.958887) with  --  ATCSN2; COP12; CSN2; FUS12  --  interacts with  --  ATFUS6; ATSK31; COP11; CSN1; EMB78; FUS6; SK31
9 AT5G20600  --  has similar expression pattern (mutual information value=0.958887) with  --  ATCSN2; COP12; CSN2; FUS12  --  interacts with  --  ATS4; COP14; COP8; CSN4; EMB134; FUS4; FUS8
10 AT5G20600  --  has similar expression pattern (mutual information value=0.958887) with  --  ATCSN2; COP12; CSN2; FUS12  --  interacts with  --  COP13; CSN3; FUS11
11 AT5G20600  --  has similar expression pattern (mutual information value=0.958887) with  --  ATCSN2; COP12; CSN2; FUS12  --  interacts with  --  ATCUL1
12 AT5G20600  --  has similar expression pattern (mutual information value=0.958887) with  --  ATCSN2; COP12; CSN2; FUS12  --  interacts with  --  ATCUL3; ATCUL3A; CUL3; CUL3A
13 AT5G20600  --  has similar expression pattern (mutual information value=0.958887) with  --  ATCSN2; COP12; CSN2; FUS12  --  has similar expression pattern (mutual information value=0.886495) with  --  AT2G19270
14 AT5G20600  --  has similar expression pattern (mutual information value=0.958887) with  --  ATCSN2; COP12; CSN2; FUS12  --  has similar expression pattern (mutual information value=0.928313) with  --  AT2G25670
15 AT5G20600  --  has similar expression pattern (mutual information value=0.958887) with  --  ATCSN2; COP12; CSN2; FUS12  --  has similar expression pattern (mutual information value=0.974796) with  --  AT1G65220
16 AT5G20600  --  has similar expression pattern (mutual information value=0.958887) with  --  ATCSN2; COP12; CSN2; FUS12  --  has similar expression pattern (mutual information value=0.887662) with  --  ATDSS1(I); DSS1(I)
17 AT5G20600  --  has similar expression pattern (mutual information value=0.958887) with  --  ATCSN2; COP12; CSN2; FUS12  --  has similar expression pattern (mutual information value=0.872078) with  --  SYNC3
18 AT5G20600  --  has similar expression pattern (mutual information value=0.958887) with  --  ATCSN2; COP12; CSN2; FUS12  --  has similar expression pattern (mutual information value=0.872078) with  --  EMB2755; SYNC1; SYNC1 ARATH
19 AT5G20600  --  has similar expression pattern (mutual information value=0.958887) with  --  ATCSN2; COP12; CSN2; FUS12  --  has similar expression pattern (mutual information value=1.08607) with  --  AT1G74250
20 AT5G20600  --  has similar expression pattern (mutual information value=0.958887) with  --  ATCSN2; COP12; CSN2; FUS12  --  has similar expression pattern (mutual information value=1.16199) with  --  AT1G02330
21 AT5G20600  --  has similar expression pattern (mutual information value=0.958887) with  --  ATCSN2; COP12; CSN2; FUS12  --  has similar expression pattern (mutual information value=0.983666) with  --  HAT3.1
22 AT5G20600  --  has similar expression pattern (mutual information value=0.958887) with  --  ATCSN2; COP12; CSN2; FUS12  --  has similar expression pattern (mutual information value=0.911669) with  --  EIF4B1
23 AT5G20600  --  has similar expression pattern (mutual information value=0.958887) with  --  ATCSN2; COP12; CSN2; FUS12  --  has similar expression pattern (mutual information value=1.08338) with  --  AT3G30380
24 AT5G20600  --  has similar expression pattern (mutual information value=0.958887) with  --  ATCSN2; COP12; CSN2; FUS12  --  has similar expression pattern (mutual information value=0.841035) with  --  AT1G76860
25 AT5G20600  --  has similar expression pattern (mutual information value=0.958887) with  --  ATCSN2; COP12; CSN2; FUS12  --  has similar expression pattern (mutual information value=0.847174) with  --  AT4G02030
26 AT5G20600  --  has similar expression pattern (mutual information value=0.958887) with  --  ATCSN2; COP12; CSN2; FUS12  --  has similar expression pattern (mutual information value=0.864039) with  --  AT5G23920
27 AT5G20600  --  has similar expression pattern (mutual information value=0.958887) with  --  ATCSN2; COP12; CSN2; FUS12  --  has similar expression pattern (mutual information value=0.842626) with  --  AT5G53570
28 AT5G20600  --  has similar expression pattern (mutual information value=0.958887) with  --  ATCSN2; COP12; CSN2; FUS12  --  has similar expression pattern (mutual information value=0.970306) with  --  AT1G31870
29 AT5G20600  --  has similar expression pattern (mutual information value=0.895698) with  --  AT3G02760  --  has similar expression pattern (mutual information value=0.939673) with  --  AT2G33840
30 AT5G20600  --  has similar expression pattern (mutual information value=0.895698) with  --  AT3G02760  --  has similar expression pattern (mutual information value=0.939673) with  --  AT1G28350
31 AT5G20600  --  has similar expression pattern (mutual information value=0.895698) with  --  AT3G02760  --  has similar expression pattern (mutual information value=0.835627) with  --  RIP3
32 AT5G20600  --  has similar expression pattern (mutual information value=0.895698) with  --  AT3G02760  --  has similar expression pattern (mutual information value=0.923653) with  --  AT3G24080
33 AT5G20600  --  has similar expression pattern (mutual information value=0.895698) with  --  AT3G02760  --  has similar expression pattern (mutual information value=0.943233) with  --  AT3G58840
34 AT5G20600  --  has similar expression pattern (mutual information value=0.895698) with  --  AT3G02760  --  has similar expression pattern (mutual information value=0.927914) with  --  NACA3
35 AT5G20600  --  has similar expression pattern (mutual information value=0.895698) with  --  AT3G02760  --  has similar expression pattern (mutual information value=0.872898) with  --  PSL4
36 AT5G20600  --  has similar expression pattern (mutual information value=0.895698) with  --  AT3G02760  --  has similar expression pattern (mutual information value=1.04035) with  --  AT5G57120
37 AT5G20600  --  has similar expression pattern (mutual information value=0.895698) with  --  AT3G02760  --  has similar expression pattern (mutual information value=0.968976) with  --  PNM1
38 AT5G20600  --  has similar expression pattern (mutual information value=0.895698) with  --  AT3G02760  --  has product (in catalytic reaction)  --  L-Histidyl-tRNA(His)
39 AT5G20600  --  has similar expression pattern (mutual information value=1.04672) with  --  GTE01; GTE1; IMB1  --  has similar expression pattern (mutual information value=1.11411) with  --  AT2G47790
40 AT5G20600  --  has similar expression pattern (mutual information value=1.04672) with  --  GTE01; GTE1; IMB1  --  has similar expression pattern (mutual information value=0.811798) with  --  AT1G60200
41 AT5G20600  --  has similar expression pattern (mutual information value=1.04672) with  --  GTE01; GTE1; IMB1  --  has similar expression pattern (mutual information value=1.04747) with  --  AT1G05410
42 AT5G20600  --  has similar expression pattern (mutual information value=1.04672) with  --  GTE01; GTE1; IMB1  --  has similar expression pattern (mutual information value=0.879799) with  --  ATPRP40C; PRP40C
43 AT5G20600  --  has similar expression pattern (mutual information value=1.04672) with  --  GTE01; GTE1; IMB1  --  has similar expression pattern (mutual information value=1.07432) with  --  AT3G19630
44 AT5G20600  --  has similar expression pattern (mutual information value=1.04672) with  --  GTE01; GTE1; IMB1  --  has similar expression pattern (mutual information value=1.03788) with  --  AT4G22350
45 AT5G20600  --  has similar expression pattern (mutual information value=1.04672) with  --  GTE01; GTE1; IMB1  --  has similar expression pattern (mutual information value=1.03788) with  --  AT4G22285
46 AT5G20600  --  has similar expression pattern (mutual information value=1.04672) with  --  GTE01; GTE1; IMB1  --  has similar expression pattern (mutual information value=0.839321) with  --  SDN2
47 AT5G20600  --  has similar expression pattern (mutual information value=1.04672) with  --  GTE01; GTE1; IMB1  --  has similar expression pattern (mutual information value=0.832042) with  --  AT5G49400
48 AT5G20600  --  has similar expression pattern (mutual information value=1.04672) with  --  GTE01; GTE1; IMB1  --  is the target gene of  --  ath-miR865-3p
49 AT5G20600  --  has similar expression pattern (mutual information value=0.829907) with  --  ATRBP47B; RBP47B  --  has similar expression pattern (mutual information value=0.946737) with  --  EDA13; EDA19; SWA1
50 AT5G20600  --  has similar expression pattern (mutual information value=0.829907) with  --  ATRBP47B; RBP47B  --  has similar expression pattern (mutual information value=0.810661) with  --  AT2G21185
51 AT5G20600  --  has similar expression pattern (mutual information value=0.829907) with  --  ATRBP47B; RBP47B  --  has similar expression pattern (mutual information value=0.800968) with  --  ATFKBP62; FKBP62; ROF1
52 AT5G20600  --  has similar expression pattern (mutual information value=0.91653) with  --  AT5G61880  --  has similar expression pattern (mutual information value=0.813209) with  --  ASK3; SK3
53 AT5G20600  --  has similar expression pattern (mutual information value=0.91653) with  --  AT5G61880  --  has similar expression pattern (mutual information value=0.903744) with  --  FZF
54 AT5G20600  --  has similar expression pattern (mutual information value=0.91653) with  --  AT5G61880  --  has similar expression pattern (mutual information value=0.860375) with  --  ATTOM22-I; TOM22-I
55 AT5G20600  --  has similar expression pattern (mutual information value=0.91653) with  --  AT5G61880  --  has similar expression pattern (mutual information value=0.897811) with  --  DRT111
56 AT5G20600  --  has similar expression pattern (mutual information value=0.91653) with  --  AT5G61880  --  has similar expression pattern (mutual information value=0.896639) with  --  AT1G07615
57 AT5G20600  --  has similar expression pattern (mutual information value=0.91653) with  --  AT5G61880  --  has similar expression pattern (mutual information value=0.891875) with  --  AT3G07590
58 AT5G20600  --  has similar expression pattern (mutual information value=0.91653) with  --  AT5G61880  --  has similar expression pattern (mutual information value=1.14105) with  --  AT3G03420
59 AT5G20600  --  has similar expression pattern (mutual information value=0.91653) with  --  AT5G61880  --  has similar expression pattern (mutual information value=0.853282) with  --  AT3G05810
60 AT5G20600  --  has similar expression pattern (mutual information value=0.91653) with  --  AT5G61880  --  has similar expression pattern (mutual information value=1.05632) with  --  AT4G01990
61 AT5G20600  --  has similar expression pattern (mutual information value=0.91653) with  --  AT5G61880  --  has similar expression pattern (mutual information value=1.0351) with  --  AT3G49890
62 AT5G20600  --  has similar expression pattern (mutual information value=0.91653) with  --  AT5G61880  --  has similar expression pattern (mutual information value=0.885307) with  --  AT5G11310
63 AT5G20600  --  has similar expression pattern (mutual information value=0.91653) with  --  AT5G61880  --  has similar expression pattern (mutual information value=0.804392) with  --  AT5G17270
64 AT5G20600  --  has similar expression pattern (mutual information value=0.91653) with  --  AT5G61880  --  has similar expression pattern (mutual information value=0.971084) with  --  AT5G55200
65 AT5G20600  --  has similar expression pattern (mutual information value=0.91653) with  --  AT5G61880  --  has similar expression pattern (mutual information value=0.804536) with  --  AT5G26110
66 AT5G20600  --  has similar expression pattern (mutual information value=0.91653) with  --  AT5G61880  --  transport  --  Phospholipid
67 AT5G20600  --  has similar expression pattern (mutual information value=1.01984) with  --  SDN3  --  has similar expression pattern (mutual information value=0.911464) with  --  AT2G34357
68 AT5G20600  --  has similar expression pattern (mutual information value=1.01984) with  --  SDN3  --  has similar expression pattern (mutual information value=0.96791) with  --  AT3G01160
69 AT5G20600  --  has similar expression pattern (mutual information value=1.01984) with  --  SDN3  --  has similar expression pattern (mutual information value=0.939985) with  --  AT4G25730
70 AT5G20600  --  has similar expression pattern (mutual information value=1.01984) with  --  SDN3  --  has similar expression pattern (mutual information value=0.844441) with  --  AT4G25210
71 AT5G20600  --  has similar expression pattern (mutual information value=1.01984) with  --  SDN3  --  has similar expression pattern (mutual information value=1.08974) with  --  AT5G50310
72 AT5G20600  --  has similar expression pattern (mutual information value=1.01984) with  --  SDN3  --  is the target gene of  --  ath-miR4239
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