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Location:  Home > Details for node AT3G28900
Type: Protein GRN ID: np27483 Name:
Annotation: Ribosomal protein L34e superfamily protein
Gene Locus: AT3G28900
Gene Expression (Affy ATH1 probeset): 257141_at    
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 Protein modification
 Protein-protein interaction
        also include predicted relationship
 Compound-protein interaction
 TF-target gene regulation
 Small RNA-target regulation
        also include predicted relationship
 Carrier and transported molecule
 Catalytic chemical reaction
 Co-expressed gene pair
        with mutual information value >

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Relationship type:  protein modification     catalytic chemical reaction     protein-protein interaction    
compound-protein interaction     TF-target gene regulation     small RNA-target regulation    
co-expressed gene pair     carrier and transported molecule     family/complex and member
Relationship evidence:  Solid line: validated          Dashed line: predicted
Relationship direction: Arrow: positive          T shape: negative          None arrow: unknown or n/a
Hormone association: Thicker line: hormone related relationship         : hormone related Node
Node type:  Transcription factor or transcriptional regulator       Compound       Kinase
 Small regulatory RNA (miRNA & ta-siRNA)       Other nodes
No. Path
2 AT3G28900  --  interacts with  --  LSU1
3 AT3G28900  --  has similar expression pattern (mutual information value=1.03879) with  --  ATRPL23A; RPL23A; RPL23AA
4 AT3G28900  --  has similar expression pattern (mutual information value=0.97289) with  --  ATBTF3; BTF3
5 AT3G28900  --  has similar expression pattern (mutual information value=0.94248) with  --  AT4G13720
6 AT3G28900  --  has similar expression pattern (mutual information value=0.951185) with  --  RPL16B
7 AT3G28900  --  has similar expression pattern (mutual information value=0.951185) with  --  AT5G45775
8 AT3G28900  --  has similar expression pattern (mutual information value=1.03358) with  --  AT5G47700
9 AT3G28900  --  has similar expression pattern (mutual information value=1.13774) with  --  AT5G61170
10 AT3G28900  --  has similar expression pattern (mutual information value=1.03083) with  --  AT5G16130
11 AT3G28900  --  interacts with  --  LSU1  --  interacts with  --  ATSPX4; SPX4
12 AT3G28900  --  interacts with  --  LSU1  --  interacts with  --  RPS18C
13 AT3G28900  --  interacts with  --  LSU1  --  interacts with  --  AT4G18630
14 AT3G28900  --  interacts with  --  LSU1  --  interacts with  --  AT5G57910
15 AT3G28900  --  interacts with  --  LSU1  --  interacts with  --  AT5G22890
16 AT3G28900  --  interacts with  --  LSU1  --  interacts with  --  AT5G09770
17 AT3G28900  --  interacts with  --  LSU1  --  interacts with  --  VAR3
18 AT3G28900  --  interacts with  --  LSU1  --  interacts with  --  AT5G23130
19 AT3G28900  --  interacts with  --  LSU1  --  interacts with  --  ASHR3; SDG4
20 AT3G28900  --  interacts with  --  LSU1  --  interacts with  --  AT4G26310
21 AT3G28900  --  interacts with  --  LSU1  --  interacts with  --  PSAD-1
22 AT3G28900  --  interacts with  --  LSU1  --  interacts with  --  ATPTEN1; PTEN1
23 AT3G28900  --  interacts with  --  LSU1  --  interacts with  --  AtCIB22; CIB22
24 AT3G28900  --  interacts with  --  LSU1  --  interacts with  --  VPS9B
25 AT3G28900  --  interacts with  --  LSU1  --  interacts with  --  AT5G66720
26 AT3G28900  --  interacts with  --  LSU1  --  interacts with  --  PBF1
27 AT3G28900  --  interacts with  --  LSU1  --  interacts with  --  ful
28 AT3G28900  --  interacts with  --  LSU1  --  interacts with  --  FSD2
29 AT3G28900  --  interacts with  --  LSU1  --  interacts with  --  AT5G65220
30 AT3G28900  --  interacts with  --  LSU1  --  interacts with  --  HMA6; PAA1
31 AT3G28900  --  interacts with  --  LSU1  --  interacts with  --  AT4G28200
32 AT3G28900  --  interacts with  --  LSU1  --  interacts with  --  AT5G54580
33 AT3G28900  --  interacts with  --  LSU1  --  interacts with  --  AT4G36970
34 AT3G28900  --  interacts with  --  LSU1  --  interacts with  --  TOE2
35 AT3G28900  --  interacts with  --  LSU1  --  interacts with  --  AT5G11090
36 AT3G28900  --  interacts with  --  LSU1  --  interacts with  --  AT5G65683
37 AT3G28900  --  interacts with  --  LSU1  --  interacts with  --  AT4G30490
38 AT3G28900  --  interacts with  --  LSU1  --  interacts with  --  AT4G12450
39 AT3G28900  --  interacts with  --  LSU1  --  interacts with  --  AT5G38420
40 AT3G28900  --  interacts with  --  LSU1  --  interacts with  --  AT5G02870
41 AT3G28900  --  interacts with  --  LSU1  --  interacts with  --  AT4G39820
42 AT3G28900  --  interacts with  --  LSU1  --  interacts with  --  AtPP2-B5; PP2-B5
43 AT3G28900  --  interacts with  --  LSU1  --  interacts with  --  LSH4
44 AT3G28900  --  interacts with  --  LSU1  --  interacts with  --  AT1G01440
45 AT3G28900  --  interacts with  --  LSU1  --  interacts with  --  NRPB6B; NRPE6B
46 AT3G28900  --  interacts with  --  LSU1  --  interacts with  --  BLH8; PNF
47 AT3G28900  --  interacts with  --  LSU1  --  interacts with  --  AT2G32840
48 AT3G28900  --  interacts with  --  LSU1  --  interacts with  --  AT1G11430
49 AT3G28900  --  interacts with  --  LSU1  --  interacts with  --  ATGRX2; CXIP2
50 AT3G28900  --  interacts with  --  LSU1  --  interacts with  --  AT2G38300
51 AT3G28900  --  interacts with  --  LSU1  --  interacts with  --  AT3G06790
52 AT3G28900  --  interacts with  --  LSU1  --  interacts with  --  AT2G16930
53 AT3G28900  --  interacts with  --  LSU1  --  interacts with  --  AT3G13160
54 AT3G28900  --  interacts with  --  LSU1  --  interacts with  --  EDS1
55 AT3G28900  --  interacts with  --  LSU1  --  interacts with  --  AT3G08740
56 AT3G28900  --  interacts with  --  LSU1  --  interacts with  --  NF-YA4
57 AT3G28900  --  interacts with  --  LSU1  --  interacts with  --  AT1G32580
58 AT3G28900  --  interacts with  --  LSU1  --  interacts with  --  AT1G06270
59 AT3G28900  --  interacts with  --  LSU1  --  interacts with  --  AT3G06590
60 AT3G28900  --  interacts with  --  LSU1  --  interacts with  --  AT2G04390
61 AT3G28900  --  interacts with  --  LSU1  --  interacts with  --  ATERF12
62 AT3G28900  --  interacts with  --  LSU1  --  interacts with  --  AT1G77400
63 AT3G28900  --  interacts with  --  LSU1  --  interacts with  --  AT2G17880
64 AT3G28900  --  interacts with  --  LSU1  --  interacts with  --  SKL2
65 AT3G28900  --  interacts with  --  LSU1  --  interacts with  --  AT2G24860
66 AT3G28900  --  interacts with  --  LSU1  --  interacts with  --  AT2G35240
67 AT3G28900  --  interacts with  --  LSU1  --  interacts with  --  GATA24; TIFY2B; ZML1; ZML1
68 AT3G28900  --  interacts with  --  LSU1  --  interacts with  --  AT2G43370
69 AT3G28900  --  interacts with  --  LSU1  --  interacts with  --  AT1G53800
70 AT3G28900  --  interacts with  --  LSU1  --  interacts with  --  AT1G26740
71 AT3G28900  --  interacts with  --  LSU1  --  interacts with  --  AT1G71970
72 AT3G28900  --  interacts with  --  LSU1  --  interacts with  --  AT1G03250
73 AT3G28900  --  interacts with  --  LSU1  --  interacts with  --  AT2G26800
74 AT3G28900  --  interacts with  --  LSU1  --  interacts with  --  AT1G34030
75 AT3G28900  --  interacts with  --  LSU1  --  interacts with  --  ZFP7
76 AT3G28900  --  interacts with  --  LSU1  --  interacts with  --  ATCFM2; CFM2
77 AT3G28900  --  interacts with  --  LSU1  --  interacts with  --  AT1G75400
78 AT3G28900  --  interacts with  --  LSU1  --  interacts with  --  AT1G31050
79 AT3G28900  --  interacts with  --  LSU1  --  interacts with  --  AT1G49850
80 AT3G28900  --  interacts with  --  LSU1  --  interacts with  --  AT3G13310
81 AT3G28900  --  interacts with  --  LSU1  --  interacts with  --  AT3G05625
82 AT3G28900  --  interacts with  --  LSU1  --  interacts with  --  AtSS2; SS2
83 AT3G28900  --  interacts with  --  LSU1  --  interacts with  --  JAZ9
84 AT3G28900  --  interacts with  --  LSU1  --  interacts with  --  AT3G07480
85 AT3G28900  --  interacts with  --  LSU1  --  interacts with  --  ENA
86 AT3G28900  --  interacts with  --  LSU1  --  interacts with  --  JAZ1
87 AT3G28900  --  interacts with  --  LSU1  --  interacts with  --  PAB3
88 AT3G28900  --  has similar expression pattern (mutual information value=1.03879) with  --  ATRPL23A; RPL23A; RPL23AA  --  has similar expression pattern (mutual information value=1.00699) with  --  AT2G19750
89 AT3G28900  --  has similar expression pattern (mutual information value=1.03879) with  --  ATRPL23A; RPL23A; RPL23AA  --  has similar expression pattern (mutual information value=1.36054) with  --  AT2G27710
90 AT3G28900  --  has similar expression pattern (mutual information value=1.03879) with  --  ATRPL23A; RPL23A; RPL23AA  --  has similar expression pattern (mutual information value=1.28593) with  --  AT3G04840
91 AT3G28900  --  has similar expression pattern (mutual information value=1.03879) with  --  ATRPL23A; RPL23A; RPL23AA  --  has similar expression pattern (mutual information value=1.05345) with  --  AT3G22230
92 AT3G28900  --  has similar expression pattern (mutual information value=1.03879) with  --  ATRPL23A; RPL23A; RPL23AA  --  has similar expression pattern (mutual information value=1.20042) with  --  AT2G05220
93 AT3G28900  --  has similar expression pattern (mutual information value=1.03879) with  --  ATRPL23A; RPL23A; RPL23AA  --  has similar expression pattern (mutual information value=1.20042) with  --  AT5G04800
94 AT3G28900  --  has similar expression pattern (mutual information value=0.94248) with  --  AT4G13720  --  has similar expression pattern (mutual information value=0.887033) with  --  AT4G00810
95 AT3G28900  --  has similar expression pattern (mutual information value=0.94248) with  --  AT4G13720  --  has similar expression pattern (mutual information value=0.949661) with  --  AT4G13170
96 AT3G28900  --  has similar expression pattern (mutual information value=0.94248) with  --  AT4G13720  --  has similar expression pattern (mutual information value=0.900009) with  --  AT5G27820
97 AT3G28900  --  has similar expression pattern (mutual information value=0.94248) with  --  AT4G13720  --  has product (in catalytic reaction)  --  Nucleotide
98 AT3G28900  --  has similar expression pattern (mutual information value=0.951185) with  --  RPL16B  --  has similar expression pattern (mutual information value=1.1082) with  --  AT5G18380
99 AT3G28900  --  has similar expression pattern (mutual information value=0.951185) with  --  RPL16B  --  has similar expression pattern (mutual information value=1.1082) with  --  AT2G09990
100 AT3G28900  --  has similar expression pattern (mutual information value=0.951185) with  --  RPL16B  --  has similar expression pattern (mutual information value=1.06983) with  --  AT1G33120
101 AT3G28900  --  has similar expression pattern (mutual information value=0.951185) with  --  RPL16B  --  has similar expression pattern (mutual information value=1.06983) with  --  PGY2
102 AT3G28900  --  has similar expression pattern (mutual information value=0.951185) with  --  RPL16B  --  has similar expression pattern (mutual information value=1.22233) with  --  AT1G01100
103 AT3G28900  --  has similar expression pattern (mutual information value=0.951185) with  --  RPL16B  --  has similar expression pattern (mutual information value=1.2954) with  --  AT5G48760
104 AT3G28900  --  has similar expression pattern (mutual information value=0.951185) with  --  RPL16B  --  has similar expression pattern (mutual information value=0.868447) with  --  AT1G07930
105 AT3G28900  --  has similar expression pattern (mutual information value=0.951185) with  --  RPL16B  --  has similar expression pattern (mutual information value=0.868447) with  --  AT1G07920
106 AT3G28900  --  has similar expression pattern (mutual information value=0.951185) with  --  RPL16B  --  has similar expression pattern (mutual information value=0.868447) with  --  AT1G07940
107 AT3G28900  --  has similar expression pattern (mutual information value=1.03358) with  --  AT5G47700  --  interacts with  --  AT2G40010
108 AT3G28900  --  has similar expression pattern (mutual information value=1.03358) with  --  AT5G47700  --  has similar expression pattern (mutual information value=1.04579) with  --  RPL24A
109 AT3G28900  --  has similar expression pattern (mutual information value=1.03358) with  --  AT5G47700  --  has similar expression pattern (mutual information value=1.02431) with  --  AT2G40510
110 AT3G28900  --  has similar expression pattern (mutual information value=1.03358) with  --  AT5G47700  --  has similar expression pattern (mutual information value=1.02431) with  --  AT2G40590
111 AT3G28900  --  has similar expression pattern (mutual information value=1.03358) with  --  AT5G47700  --  has similar expression pattern (mutual information value=0.961646) with  --  AT1G18540
112 AT3G28900  --  has similar expression pattern (mutual information value=1.03358) with  --  AT5G47700  --  has similar expression pattern (mutual information value=0.994854) with  --  AT1G57860
113 AT3G28900  --  has similar expression pattern (mutual information value=1.03358) with  --  AT5G47700  --  has similar expression pattern (mutual information value=0.994854) with  --  AT1G57660
114 AT3G28900  --  has similar expression pattern (mutual information value=1.13774) with  --  AT5G61170  --  has similar expression pattern (mutual information value=1.48976) with  --  AT3G07110
115 AT3G28900  --  has similar expression pattern (mutual information value=1.13774) with  --  AT5G61170  --  has similar expression pattern (mutual information value=0.964462) with  --  CARA; VEN6
116 AT3G28900  --  has similar expression pattern (mutual information value=1.13774) with  --  AT5G61170  --  has similar expression pattern (mutual information value=0.910158) with  --  AT3G13230
117 AT3G28900  --  has similar expression pattern (mutual information value=1.13774) with  --  AT5G61170  --  has similar expression pattern (mutual information value=1.21416) with  --  RACK1B; RACK1B_AT
118 AT3G28900  --  has similar expression pattern (mutual information value=1.13774) with  --  AT5G61170  --  has similar expression pattern (mutual information value=1.03698) with  --  AT3G45030
119 AT3G28900  --  has similar expression pattern (mutual information value=1.13774) with  --  AT5G61170  --  has similar expression pattern (mutual information value=1.22002) with  --  AT5G59850
120 AT3G28900  --  has similar expression pattern (mutual information value=1.13774) with  --  AT5G61170  --  has similar expression pattern (mutual information value=1.22042) with  --  AT5G60670
121 AT3G28900  --  has similar expression pattern (mutual information value=1.03083) with  --  AT5G16130  --  interacts with  --  AtMC9; AtMCP2f; MC9; MCP2f
122 AT3G28900  --  has similar expression pattern (mutual information value=1.03083) with  --  AT5G16130  --  has similar expression pattern (mutual information value=1.1392) with  --  RPS15
123 AT3G28900  --  has similar expression pattern (mutual information value=1.03083) with  --  AT5G16130  --  has similar expression pattern (mutual information value=1.57518) with  --  AT1G77940
124 AT3G28900  --  has similar expression pattern (mutual information value=1.03083) with  --  AT5G16130  --  has similar expression pattern (mutual information value=1.15201) with  --  AT3G09680
125 AT3G28900  --  has similar expression pattern (mutual information value=1.03083) with  --  AT5G16130  --  has similar expression pattern (mutual information value=1.15201) with  --  AT5G02960
126 AT3G28900  --  has similar expression pattern (mutual information value=1.03083) with  --  AT5G16130  --  has similar expression pattern (mutual information value=0.817182) with  --  AT5G10010
127 AT3G28900  --  has similar expression pattern (mutual information value=1.03083) with  --  AT5G16130  --  has similar expression pattern (mutual information value=1.04042) with  --  AT1G58983
128 AT3G28900  --  has similar expression pattern (mutual information value=1.03083) with  --  AT5G16130  --  has similar expression pattern (mutual information value=1.04042) with  --  AT1G59359
129 AT3G28900  --  has similar expression pattern (mutual information value=1.03083) with  --  AT5G16130  --  has similar expression pattern (mutual information value=1.04042) with  --  AT1G58684
130 AT3G28900  --  has similar expression pattern (mutual information value=1.03083) with  --  AT5G16130  --  has similar expression pattern (mutual information value=1.04042) with  --  XW6
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