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A Graph Search-Empowered Integrative Database of Arabidopsis Signaling Transduction, Metabolism and Gene Regulation Networks   
Location:  Home > Details for node AT4G38020
Type: Protein GRN ID: np34688 Name:
Annotation: tRNA/rRNA methyltransferase (SpoU) family protein
Gene Locus: AT4G38020
Gene Expression (Affy ATH1 probeset): 253020_at    
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 Protein modification
 Protein-protein interaction
        also include predicted relationship
 Compound-protein interaction
 TF-target gene regulation
 Small RNA-target regulation
        also include predicted relationship
 Carrier and transported molecule
 Catalytic chemical reaction
 Co-expressed gene pair
        with mutual information value >

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Relationship type:  protein modification     catalytic chemical reaction     protein-protein interaction    
compound-protein interaction     TF-target gene regulation     small RNA-target regulation    
co-expressed gene pair     carrier and transported molecule     family/complex and member
Relationship evidence:  Solid line: validated          Dashed line: predicted
Relationship direction: Arrow: positive          T shape: negative          None arrow: unknown or n/a
Hormone association: Thicker line: hormone related relationship         : hormone related Node
Node type:  Transcription factor or transcriptional regulator       Compound       Kinase
 Small regulatory RNA (miRNA & ta-siRNA)       Other nodes
No. Path
2 AT4G38020  --  has similar expression pattern (mutual information value=0.836593) with  --  AT1G10310
3 AT4G38020  --  has similar expression pattern (mutual information value=0.828542) with  --  AtMC4; AtMCP2d; MC4; MCP2d
4 AT4G38020  --  has similar expression pattern (mutual information value=0.952967) with  --  MRL7-L
5 AT4G38020  --  has similar expression pattern (mutual information value=0.963381) with  --  ATRAP; RAP
6 AT4G38020  --  has similar expression pattern (mutual information value=0.897886) with  --  AT1G10522
7 AT4G38020  --  has similar expression pattern (mutual information value=1.03355) with  --  AT3G10350
8 AT4G38020  --  has similar expression pattern (mutual information value=0.942522) with  --  PAM68
9 AT4G38020  --  has similar expression pattern (mutual information value=0.991593) with  --  AT4G18975
10 AT4G38020  --  has similar expression pattern (mutual information value=0.892647) with  --  OSB2; PTAC9
11 AT4G38020  --  has similar expression pattern (mutual information value=0.923266) with  --  AT4G38490
12 AT4G38020  --  has similar expression pattern (mutual information value=0.962546) with  --  PDE312; PTAC10
13 AT4G38020  --  has similar expression pattern (mutual information value=0.915951) with  --  FLN1
14 AT4G38020  --  has similar expression pattern (mutual information value=1.08305) with  --  BPG2
15 AT4G38020  --  has similar expression pattern (mutual information value=0.805984) with  --  PR5K
16 AT4G38020  --  has similar expression pattern (mutual information value=0.906383) with  --  AT5G38290
17 AT4G38020  --  has similar expression pattern (mutual information value=0.891698) with  --  EMB139; EMB506
18 AT4G38020  --  has similar expression pattern (mutual information value=0.866951) with  --  AT5G44000
19 AT4G38020  --  has similar expression pattern (mutual information value=0.974143) with  --  AtPLR1; PLR1
20 AT4G38020  --  has similar expression pattern (mutual information value=0.993526) with  --  AT5G53940
21 AT4G38020  --  has similar expression pattern (mutual information value=1.23797) with  --  AT5G08400
22 AT4G38020  --  has similar expression pattern (mutual information value=0.828542) with  --  AtMC4; AtMCP2d; MC4; MCP2d  --  has similar expression pattern (mutual information value=0.959413) with  --  RNR2; RNR2A
23 AT4G38020  --  has similar expression pattern (mutual information value=0.828542) with  --  AtMC4; AtMCP2d; MC4; MCP2d  --  has similar expression pattern (mutual information value=0.804847) with  --  AT3G57810
24 AT4G38020  --  has similar expression pattern (mutual information value=0.828542) with  --  AtMC4; AtMCP2d; MC4; MCP2d  --  has similar expression pattern (mutual information value=0.844558) with  --  AT5G27730
25 AT4G38020  --  has similar expression pattern (mutual information value=0.952967) with  --  MRL7-L  --  has similar expression pattern (mutual information value=1.04819) with  --  CPZ; TRZ2
26 AT4G38020  --  has similar expression pattern (mutual information value=0.952967) with  --  MRL7-L  --  has similar expression pattern (mutual information value=0.810328) with  --  PAC
27 AT4G38020  --  has similar expression pattern (mutual information value=0.952967) with  --  MRL7-L  --  has similar expression pattern (mutual information value=0.967626) with  --  AT1G56050
28 AT4G38020  --  has similar expression pattern (mutual information value=0.952967) with  --  MRL7-L  --  has similar expression pattern (mutual information value=0.817194) with  --  AT1G71460
29 AT4G38020  --  has similar expression pattern (mutual information value=0.952967) with  --  MRL7-L  --  has similar expression pattern (mutual information value=1.03635) with  --  TRX P; TRX z
30 AT4G38020  --  has similar expression pattern (mutual information value=0.952967) with  --  MRL7-L  --  has similar expression pattern (mutual information value=0.897527) with  --  ABCI12
31 AT4G38020  --  has similar expression pattern (mutual information value=0.952967) with  --  MRL7-L  --  has similar expression pattern (mutual information value=0.827283) with  --  PLSP1
32 AT4G38020  --  has similar expression pattern (mutual information value=0.952967) with  --  MRL7-L  --  has similar expression pattern (mutual information value=0.914325) with  --  AT3G13180
33 AT4G38020  --  has similar expression pattern (mutual information value=0.952967) with  --  MRL7-L  --  has similar expression pattern (mutual information value=0.802684) with  --  AT3G56330
34 AT4G38020  --  has similar expression pattern (mutual information value=0.952967) with  --  MRL7-L  --  has similar expression pattern (mutual information value=0.845583) with  --  AT3G63510
35 AT4G38020  --  has similar expression pattern (mutual information value=0.952967) with  --  MRL7-L  --  has similar expression pattern (mutual information value=0.811925) with  --  AtCEST; CEST; Y3IP1
36 AT4G38020  --  has similar expression pattern (mutual information value=0.952967) with  --  MRL7-L  --  has similar expression pattern (mutual information value=1.02415) with  --  AT5G46580
37 AT4G38020  --  has similar expression pattern (mutual information value=0.952967) with  --  MRL7-L  --  has similar expression pattern (mutual information value=0.938303) with  --  ATFTSZ1-1; CPFTSZ; FTSZ1-1
38 AT4G38020  --  has similar expression pattern (mutual information value=0.952967) with  --  MRL7-L  --  has similar expression pattern (mutual information value=1.00171) with  --  AT1G67660
39 AT4G38020  --  has similar expression pattern (mutual information value=0.963381) with  --  ATRAP; RAP  --  has similar expression pattern (mutual information value=1.17412) with  --  AT2G32650
40 AT4G38020  --  has similar expression pattern (mutual information value=0.963381) with  --  ATRAP; RAP  --  has similar expression pattern (mutual information value=1.17412) with  --  PTAC18
41 AT4G38020  --  has similar expression pattern (mutual information value=0.963381) with  --  ATRAP; RAP  --  has similar expression pattern (mutual information value=1.12058) with  --  HMR; PTAC12
42 AT4G38020  --  has similar expression pattern (mutual information value=0.963381) with  --  ATRAP; RAP  --  has similar expression pattern (mutual information value=0.84958) with  --  AT3G02060
43 AT4G38020  --  has similar expression pattern (mutual information value=0.963381) with  --  ATRAP; RAP  --  has similar expression pattern (mutual information value=1.04236) with  --  PDE324; PTAC3
44 AT4G38020  --  has similar expression pattern (mutual information value=0.963381) with  --  ATRAP; RAP  --  has similar expression pattern (mutual information value=0.932168) with  --  TRZ4
45 AT4G38020  --  has similar expression pattern (mutual information value=0.963381) with  --  ATRAP; RAP  --  has similar expression pattern (mutual information value=1.05355) with  --  EMB2083
46 AT4G38020  --  has similar expression pattern (mutual information value=0.963381) with  --  ATRAP; RAP  --  has similar expression pattern (mutual information value=1.0397) with  --  EMB2369
47 AT4G38020  --  has similar expression pattern (mutual information value=0.963381) with  --  ATRAP; RAP  --  has similar expression pattern (mutual information value=0.949201) with  --  AT4G23940
48 AT4G38020  --  has similar expression pattern (mutual information value=0.963381) with  --  ATRAP; RAP  --  has similar expression pattern (mutual information value=0.937963) with  --  ATPPR5; EMB2453
49 AT4G38020  --  has similar expression pattern (mutual information value=0.963381) with  --  ATRAP; RAP  --  has similar expression pattern (mutual information value=0.938545) with  --  ATNOA1; ATNOS1; NOA1; NOS1; RIF1
50 AT4G38020  --  has similar expression pattern (mutual information value=0.963381) with  --  ATRAP; RAP  --  has similar expression pattern (mutual information value=1.19858) with  --  ATOBGC; ATOBGL; CPSAR1; EMB269; EMB3138
51 AT4G38020  --  has similar expression pattern (mutual information value=0.963381) with  --  ATRAP; RAP  --  has similar expression pattern (mutual information value=1.05972) with  --  FSD3
52 AT4G38020  --  has similar expression pattern (mutual information value=0.963381) with  --  ATRAP; RAP  --  has similar expression pattern (mutual information value=0.95716) with  --  EMB3144
53 AT4G38020  --  has similar expression pattern (mutual information value=0.897886) with  --  AT1G10522  --  interacts with  --  CRB; CSP41B; HIP1.3
54 AT4G38020  --  has similar expression pattern (mutual information value=0.897886) with  --  AT1G10522  --  has similar expression pattern (mutual information value=1.1025) with  --  AT1G11430
55 AT4G38020  --  has similar expression pattern (mutual information value=0.897886) with  --  AT1G10522  --  has similar expression pattern (mutual information value=0.908664) with  --  AT1G48460
56 AT4G38020  --  has similar expression pattern (mutual information value=0.897886) with  --  AT1G10522  --  has similar expression pattern (mutual information value=1.09216) with  --  AT3G21300
57 AT4G38020  --  has similar expression pattern (mutual information value=0.897886) with  --  AT1G10522  --  has similar expression pattern (mutual information value=1.14962) with  --  AT3G18420
58 AT4G38020  --  has similar expression pattern (mutual information value=0.897886) with  --  AT1G10522  --  has similar expression pattern (mutual information value=1.04123) with  --  AT4G26370
59 AT4G38020  --  has similar expression pattern (mutual information value=0.897886) with  --  AT1G10522  --  has similar expression pattern (mutual information value=1.27075) with  --  EMB1923
60 AT4G38020  --  has similar expression pattern (mutual information value=0.897886) with  --  AT1G10522  --  has similar expression pattern (mutual information value=1.14147) with  --  AT4G34290
61 AT4G38020  --  has similar expression pattern (mutual information value=0.897886) with  --  AT1G10522  --  has similar expression pattern (mutual information value=0.913452) with  --  AT3G59980
62 AT4G38020  --  has similar expression pattern (mutual information value=0.897886) with  --  AT1G10522  --  has similar expression pattern (mutual information value=0.888238) with  --  PDE340
63 AT4G38020  --  has similar expression pattern (mutual information value=0.897886) with  --  AT1G10522  --  has similar expression pattern (mutual information value=1.05034) with  --  SVR7
64 AT4G38020  --  has similar expression pattern (mutual information value=1.03355) with  --  AT3G10350  --  has similar expression pattern (mutual information value=0.826156) with  --  AT3G07670
65 AT4G38020  --  has similar expression pattern (mutual information value=1.03355) with  --  AT3G10350  --  has similar expression pattern (mutual information value=0.842147) with  --  AT3G20930
66 AT4G38020  --  has similar expression pattern (mutual information value=1.03355) with  --  AT3G10350  --  has similar expression pattern (mutual information value=0.84973) with  --  APG3
67 AT4G38020  --  has similar expression pattern (mutual information value=0.942522) with  --  PAM68  --  has similar expression pattern (mutual information value=1.15683) with  --  AT1G05140
68 AT4G38020  --  has similar expression pattern (mutual information value=0.942522) with  --  PAM68  --  has similar expression pattern (mutual information value=1.07379) with  --  ATSIG6; SIG6; SIGF; SOLDAT8
69 AT4G38020  --  has similar expression pattern (mutual information value=0.942522) with  --  PAM68  --  has similar expression pattern (mutual information value=1.07691) with  --  AT3G02450
70 AT4G38020  --  has similar expression pattern (mutual information value=0.942522) with  --  PAM68  --  has similar expression pattern (mutual information value=1.06762) with  --  AT4G24750
71 AT4G38020  --  has similar expression pattern (mutual information value=0.942522) with  --  PAM68  --  has similar expression pattern (mutual information value=1.00441) with  --  PGR3
72 AT4G38020  --  has similar expression pattern (mutual information value=0.942522) with  --  PAM68  --  has similar expression pattern (mutual information value=1.08218) with  --  AT5G02710
73 AT4G38020  --  has similar expression pattern (mutual information value=0.942522) with  --  PAM68  --  has similar expression pattern (mutual information value=0.899055) with  --  AT5G48730
74 AT4G38020  --  has similar expression pattern (mutual information value=0.991593) with  --  AT4G18975  --  has similar expression pattern (mutual information value=0.88864) with  --  AT3G03890
75 AT4G38020  --  has similar expression pattern (mutual information value=0.991593) with  --  AT4G18975  --  has similar expression pattern (mutual information value=0.876921) with  --  GPK1
76 AT4G38020  --  has similar expression pattern (mutual information value=0.991593) with  --  AT4G18975  --  has similar expression pattern (mutual information value=0.803776) with  --  AT4G13150
77 AT4G38020  --  has similar expression pattern (mutual information value=0.991593) with  --  AT4G18975  --  has similar expression pattern (mutual information value=0.852962) with  --  GAD; GAD1
78 AT4G38020  --  has similar expression pattern (mutual information value=0.991593) with  --  AT4G18975  --  has similar expression pattern (mutual information value=0.859281) with  --  AT5G41960
79 AT4G38020  --  has similar expression pattern (mutual information value=0.991593) with  --  AT4G18975  --  has similar expression pattern (mutual information value=0.815289) with  --  FPS1
80 AT4G38020  --  has similar expression pattern (mutual information value=0.962546) with  --  PDE312; PTAC10  --  has similar expression pattern (mutual information value=0.953513) with  --  AT5G10910
81 AT4G38020  --  has similar expression pattern (mutual information value=0.962546) with  --  PDE312; PTAC10  --  has similar expression pattern (mutual information value=0.83448) with  --  AT5G48470
82 AT4G38020  --  has similar expression pattern (mutual information value=0.915951) with  --  FLN1  --  interacts with  --  FLN2
83 AT4G38020  --  has similar expression pattern (mutual information value=0.915951) with  --  FLN1  --  has similar expression pattern (mutual information value=0.818416) with  --  ATCAF1; CAF1
84 AT4G38020  --  has similar expression pattern (mutual information value=0.915951) with  --  FLN1  --  has similar expression pattern (mutual information value=0.980285) with  --  MAP1B; MAP1C
85 AT4G38020  --  has similar expression pattern (mutual information value=0.915951) with  --  FLN1  --  has similar expression pattern (mutual information value=0.967451) with  --  AT3G28460
86 AT4G38020  --  has similar expression pattern (mutual information value=0.915951) with  --  FLN1  --  has similar expression pattern (mutual information value=1.27776) with  --  AT3G18680
87 AT4G38020  --  has similar expression pattern (mutual information value=0.915951) with  --  FLN1  --  has similar expression pattern (mutual information value=0.905267) with  --  ATKRS-2; OVA5
88 AT4G38020  --  has similar expression pattern (mutual information value=0.915951) with  --  FLN1  --  has similar expression pattern (mutual information value=0.81235) with  --  AT3G51870
89 AT4G38020  --  has similar expression pattern (mutual information value=1.08305) with  --  BPG2  --  has similar expression pattern (mutual information value=1.00608) with  --  EMB2654
90 AT4G38020  --  has similar expression pattern (mutual information value=1.08305) with  --  BPG2  --  has similar expression pattern (mutual information value=0.943113) with  --  scpl42
91 AT4G38020  --  has similar expression pattern (mutual information value=1.08305) with  --  BPG2  --  has similar expression pattern (mutual information value=0.848132) with  --  CRR21
92 AT4G38020  --  has similar expression pattern (mutual information value=1.08305) with  --  BPG2  --  is regulated by  --  BES1
93 AT4G38020  --  has similar expression pattern (mutual information value=0.805984) with  --  PR5K  --  interacts with  --  AT4G27610
94 AT4G38020  --  has similar expression pattern (mutual information value=0.805984) with  --  PR5K  --  interacts with  --  ATGOS12; GOS12
95 AT4G38020  --  has similar expression pattern (mutual information value=0.805984) with  --  PR5K  --  interacts with  --  AT1G61420
96 AT4G38020  --  has similar expression pattern (mutual information value=0.805984) with  --  PR5K  --  has similar expression pattern (mutual information value=0.823029) with  --  AT3G29230
97 AT4G38020  --  has similar expression pattern (mutual information value=0.805984) with  --  PR5K  --  has similar expression pattern (mutual information value=0.805597) with  --  ATNUDT14; ATNUDX14; NUDX14
98 AT4G38020  --  has similar expression pattern (mutual information value=0.805984) with  --  PR5K  --  has similar expression pattern (mutual information value=0.826435) with  --  AT4G31100
99 AT4G38020  --  has similar expression pattern (mutual information value=0.805984) with  --  PR5K  --  has similar expression pattern (mutual information value=0.802933) with  --  AT3G47210
100 AT4G38020  --  has similar expression pattern (mutual information value=0.906383) with  --  AT5G38290  --  has similar expression pattern (mutual information value=1.01346) with  --  AT3G19810
101 AT4G38020  --  has similar expression pattern (mutual information value=0.906383) with  --  AT5G38290  --  has similar expression pattern (mutual information value=0.929276) with  --  AT3G43540
102 AT4G38020  --  has similar expression pattern (mutual information value=0.906383) with  --  AT5G38290  --  has similar expression pattern (mutual information value=1.11084) with  --  LPA2
103 AT4G38020  --  has similar expression pattern (mutual information value=0.906383) with  --  AT5G38290  --  has product (in catalytic reaction)  --  tRNA
104 AT4G38020  --  has similar expression pattern (mutual information value=0.906383) with  --  AT5G38290  --  has product (in catalytic reaction)  --  N-Substituted amino acid
105 AT4G38020  --  has similar expression pattern (mutual information value=0.891698) with  --  EMB139; EMB506  --  has similar expression pattern (mutual information value=0.885798) with  --  AT1G63610
106 AT4G38020  --  has similar expression pattern (mutual information value=0.891698) with  --  EMB139; EMB506  --  has similar expression pattern (mutual information value=0.807648) with  --  ATHY2; GUN3; HY2
107 AT4G38020  --  has similar expression pattern (mutual information value=0.891698) with  --  EMB139; EMB506  --  has similar expression pattern (mutual information value=0.810701) with  --  AT3G63170
108 AT4G38020  --  has similar expression pattern (mutual information value=0.891698) with  --  EMB139; EMB506  --  has similar expression pattern (mutual information value=0.896261) with  --  FSD2
109 AT4G38020  --  has similar expression pattern (mutual information value=0.891698) with  --  EMB139; EMB506  --  interacts with  --  AT3G07500
110 AT4G38020  --  has similar expression pattern (mutual information value=0.891698) with  --  EMB139; EMB506  --  interacts with  --  GATA24; TIFY2B; ZML1; ZML1
111 AT4G38020  --  has similar expression pattern (mutual information value=0.891698) with  --  EMB139; EMB506  --  interacts with  --  AT3G48550
112 AT4G38020  --  has similar expression pattern (mutual information value=0.974143) with  --  AtPLR1; PLR1  --  has similar expression pattern (mutual information value=0.968162) with  --  ABCD2
113 AT4G38020  --  has similar expression pattern (mutual information value=0.974143) with  --  AtPLR1; PLR1  --  has similar expression pattern (mutual information value=1.02464) with  --  AT1G49380
114 AT4G38020  --  has similar expression pattern (mutual information value=0.974143) with  --  AtPLR1; PLR1  --  has similar expression pattern (mutual information value=0.803246) with  --  AT1G78180
115 AT4G38020  --  has similar expression pattern (mutual information value=0.974143) with  --  AtPLR1; PLR1  --  has similar expression pattern (mutual information value=1.09124) with  --  AT3G02690
116 AT4G38020  --  has similar expression pattern (mutual information value=0.974143) with  --  AtPLR1; PLR1  --  has similar expression pattern (mutual information value=0.954798) with  --  AT3G18500
117 AT4G38020  --  has similar expression pattern (mutual information value=0.974143) with  --  AtPLR1; PLR1  --  has similar expression pattern (mutual information value=0.817809) with  --  DHS2
118 AT4G38020  --  has similar expression pattern (mutual information value=0.974143) with  --  AtPLR1; PLR1  --  has similar expression pattern (mutual information value=1.04552) with  --  PEX11B
119 AT4G38020  --  has similar expression pattern (mutual information value=0.974143) with  --  AtPLR1; PLR1  --  has similar expression pattern (mutual information value=0.94615) with  --  AT1G26180
120 AT4G38020  --  has similar expression pattern (mutual information value=0.974143) with  --  AtPLR1; PLR1  --  has similar expression pattern (mutual information value=0.821456) with  --  AT1G45230
121 AT4G38020  --  has similar expression pattern (mutual information value=1.23797) with  --  AT5G08400  --  has similar expression pattern (mutual information value=0.829098) with  --  AT1G09740
122 AT4G38020  --  has similar expression pattern (mutual information value=1.23797) with  --  AT5G08400  --  has similar expression pattern (mutual information value=0.984159) with  --  KAT1
123 AT4G38020  --  has similar expression pattern (mutual information value=1.23797) with  --  AT5G08400  --  has similar expression pattern (mutual information value=0.807148) with  --  AT1G18910
124 AT4G38020  --  has similar expression pattern (mutual information value=1.23797) with  --  AT5G08400  --  has similar expression pattern (mutual information value=0.8001) with  --  AT3G08000
125 AT4G38020  --  has similar expression pattern (mutual information value=1.23797) with  --  AT5G08400  --  has similar expression pattern (mutual information value=0.80417) with  --  AT3G12210
126 AT4G38020  --  has similar expression pattern (mutual information value=1.23797) with  --  AT5G08400  --  has similar expression pattern (mutual information value=0.801916) with  --  AT3G48620
127 AT4G38020  --  has similar expression pattern (mutual information value=1.23797) with  --  AT5G08400  --  has similar expression pattern (mutual information value=0.801916) with  --  AT3G44160
128 AT4G38020  --  has similar expression pattern (mutual information value=1.23797) with  --  AT5G08400  --  has similar expression pattern (mutual information value=0.86893) with  --  AT3G59840
129 AT4G38020  --  has similar expression pattern (mutual information value=1.23797) with  --  AT5G08400  --  has similar expression pattern (mutual information value=0.803788) with  --  AT5G17910
130 AT4G38020  --  has similar expression pattern (mutual information value=1.23797) with  --  AT5G08400  --  has similar expression pattern (mutual information value=0.894703) with  --  AT5G39980
131 AT4G38020  --  has similar expression pattern (mutual information value=1.23797) with  --  AT5G08400  --  has similar expression pattern (mutual information value=0.945381) with  --  AT5G39940
132 AT4G38020  --  has similar expression pattern (mutual information value=1.23797) with  --  AT5G08400  --  has similar expression pattern (mutual information value=0.80118) with  --  AT4G14100
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