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A Graph Search-Empowered Integrative Database of Arabidopsis Signaling Transduction, Metabolism and Gene Regulation Networks   
Location:  Home > Details for node AT3G23940
Type: Protein GRN ID: np29098 Name:
Annotation: dehydratase family [EC:4.2.1.9]
Gene Locus: AT3G23940
Gene Expression (Affy ATH1 probeset): 256862_at    
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 Protein modification
 Protein-protein interaction
        also include predicted relationship
 Compound-protein interaction
 TF-target gene regulation
 Small RNA-target regulation
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 Carrier and transported molecule
 Catalytic chemical reaction
 Co-expressed gene pair
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Relationship type:  protein modification     catalytic chemical reaction     protein-protein interaction    
compound-protein interaction     TF-target gene regulation     small RNA-target regulation    
co-expressed gene pair     carrier and transported molecule     family/complex and member
Relationship evidence:  Solid line: validated          Dashed line: predicted
Relationship direction: Arrow: positive          T shape: negative          None arrow: unknown or n/a
Hormone association: Thicker line: hormone related relationship         : hormone related Node
Node type:  Transcription factor or transcriptional regulator       Compound       Kinase
 Small regulatory RNA (miRNA & ta-siRNA)       Other nodes
No. Path
2 AT3G23940  --  has product (in catalytic reaction)  --  3-Methyl-2-oxobutanoic acid
3 AT3G23940  --  has similar expression pattern (mutual information value=0.807246) with  --  ATRNR1; CLS8; R1; RNR1
4 AT3G23940  --  has similar expression pattern (mutual information value=0.803143) with  --  PUR4
5 AT3G23940  --  has similar expression pattern (mutual information value=0.805806) with  --  AT3G03870
6 AT3G23940  --  has similar expression pattern (mutual information value=0.826806) with  --  HSP60; HSP60-3B
7 AT3G23940  --  has similar expression pattern (mutual information value=0.816756) with  --  AT4G24830
8 AT3G23940  --  has similar expression pattern (mutual information value=0.986082) with  --  RPS6; RPS6A
9 AT3G23940  --  has similar expression pattern (mutual information value=0.963526) with  --  ATHD2A; HD2A; HDA3; HDT1
10 AT3G23940  --  has similar expression pattern (mutual information value=1.04186) with  --  AT5G02870
11 AT3G23940  --  has product (in catalytic reaction)  --  3-Methyl-2-oxobutanoic acid  --  has product (in catalytic reaction)  --  alpha-Isopropylmalate
12 AT3G23940  --  has product (in catalytic reaction)  --  3-Methyl-2-oxobutanoic acid  --  has product (in catalytic reaction)  --  2-Dehydropantoate
13 AT3G23940  --  has product (in catalytic reaction)  --  3-Methyl-2-oxobutanoic acid  --  has product (in catalytic reaction)  --  Tetrahydrofolate
14 AT3G23940  --  has product (in catalytic reaction)  --  3-Methyl-2-oxobutanoic acid  --  has product (in catalytic reaction)  --  [Dihydrolipoyllysine-residue (2-methylpropanoyl)transferase] S-(2-methylpropanoyl)dihydrolipoyllysine
15 AT3G23940  --  has product (in catalytic reaction)  --  3-Methyl-2-oxobutanoic acid  --  is product (in catalytic reaction) of  --  2,3-Dihydroxy-3-methylbutanoate
16 AT3G23940  --  has similar expression pattern (mutual information value=0.807246) with  --  ATRNR1; CLS8; R1; RNR1  --  has product (in catalytic reaction)  --  Thioredoxin
17 AT3G23940  --  has similar expression pattern (mutual information value=0.807246) with  --  ATRNR1; CLS8; R1; RNR1  --  has product (in catalytic reaction)  --  Ribonucleoside diphosphate
18 AT3G23940  --  has similar expression pattern (mutual information value=0.803143) with  --  PUR4  --  has product (in catalytic reaction)  --  2-(Formamido)-N1-(5'-phosphoribosyl)acetamidine
19 AT3G23940  --  has similar expression pattern (mutual information value=0.803143) with  --  PUR4  --  is the target gene of  --  ath-miR828
20 AT3G23940  --  has similar expression pattern (mutual information value=0.805806) with  --  AT3G03870  --  has similar expression pattern (mutual information value=0.85084) with  --  AT5G05750
21 AT3G23940  --  has similar expression pattern (mutual information value=0.826806) with  --  HSP60; HSP60-3B  --  interacts with  --  AtMC9; AtMCP2f; MC9; MCP2f
22 AT3G23940  --  has similar expression pattern (mutual information value=0.826806) with  --  HSP60; HSP60-3B  --  has similar expression pattern (mutual information value=1.00864) with  --  EDA13; EDA19; SWA1
23 AT3G23940  --  has similar expression pattern (mutual information value=0.826806) with  --  HSP60; HSP60-3B  --  has similar expression pattern (mutual information value=0.826887) with  --  AT2G18220
24 AT3G23940  --  has similar expression pattern (mutual information value=0.826806) with  --  HSP60; HSP60-3B  --  has similar expression pattern (mutual information value=1.11725) with  --  AT1G79470
25 AT3G23940  --  has similar expression pattern (mutual information value=0.826806) with  --  HSP60; HSP60-3B  --  has similar expression pattern (mutual information value=0.85264) with  --  ATCXXS1; CXXS1
26 AT3G23940  --  has similar expression pattern (mutual information value=0.826806) with  --  HSP60; HSP60-3B  --  has similar expression pattern (mutual information value=0.801964) with  --  ATBBD1; BBD1
27 AT3G23940  --  has similar expression pattern (mutual information value=0.826806) with  --  HSP60; HSP60-3B  --  has similar expression pattern (mutual information value=1.01164) with  --  AtHsp90-6; AtHsp90.6; Hsp89.1
28 AT3G23940  --  has similar expression pattern (mutual information value=0.826806) with  --  HSP60; HSP60-3B  --  has similar expression pattern (mutual information value=1.01362) with  --  AT3G03960
29 AT3G23940  --  has similar expression pattern (mutual information value=0.826806) with  --  HSP60; HSP60-3B  --  has similar expression pattern (mutual information value=0.816373) with  --  ATEIF2-A2; EIF2 ALPHA; EIF2-A2
30 AT3G23940  --  has similar expression pattern (mutual information value=0.826806) with  --  HSP60; HSP60-3B  --  has similar expression pattern (mutual information value=0.982191) with  --  AT5G14580
31 AT3G23940  --  has similar expression pattern (mutual information value=0.826806) with  --  HSP60; HSP60-3B  --  has similar expression pattern (mutual information value=0.888908) with  --  AT5G54910
32 AT3G23940  --  has similar expression pattern (mutual information value=0.826806) with  --  HSP60; HSP60-3B  --  has similar expression pattern (mutual information value=0.869488) with  --  OLI2
33 AT3G23940  --  has similar expression pattern (mutual information value=0.826806) with  --  HSP60; HSP60-3B  --  has similar expression pattern (mutual information value=1.00526) with  --  PNM1
34 AT3G23940  --  has similar expression pattern (mutual information value=0.826806) with  --  HSP60; HSP60-3B  --  has similar expression pattern (mutual information value=0.857591) with  --  AT5G62440
35 AT3G23940  --  has similar expression pattern (mutual information value=0.816756) with  --  AT4G24830  --  has similar expression pattern (mutual information value=0.813264) with  --  ATPRMT1A; PRMT1A
36 AT3G23940  --  has similar expression pattern (mutual information value=0.816756) with  --  AT4G24830  --  has similar expression pattern (mutual information value=0.851738) with  --  RACK1B; RACK1B_AT
37 AT3G23940  --  has similar expression pattern (mutual information value=0.816756) with  --  AT4G24830  --  has similar expression pattern (mutual information value=0.837627) with  --  AT-IE; HISN2
38 AT3G23940  --  has similar expression pattern (mutual information value=0.816756) with  --  AT4G24830  --  has product (in catalytic reaction)  --  N-(L-Arginino)succinate
39 AT3G23940  --  has similar expression pattern (mutual information value=0.816756) with  --  AT4G24830  --  is the target gene of  --  ath-miR5641
40 AT3G23940  --  has similar expression pattern (mutual information value=0.986082) with  --  RPS6; RPS6A  --  interacts with  --  AHL29; SOB3
41 AT3G23940  --  has similar expression pattern (mutual information value=0.986082) with  --  RPS6; RPS6A  --  interacts with  --  EDS1
42 AT3G23940  --  has similar expression pattern (mutual information value=0.986082) with  --  RPS6; RPS6A  --  has similar expression pattern (mutual information value=1.04397) with  --  RPL24A
43 AT3G23940  --  has similar expression pattern (mutual information value=0.986082) with  --  RPS6; RPS6A  --  has similar expression pattern (mutual information value=1.30658) with  --  RPL10; RPL10A; SAC52
44 AT3G23940  --  has similar expression pattern (mutual information value=0.986082) with  --  RPS6; RPS6A  --  has similar expression pattern (mutual information value=1.08671) with  --  AT3G12860
45 AT3G23940  --  has similar expression pattern (mutual information value=0.986082) with  --  RPS6; RPS6A  --  has similar expression pattern (mutual information value=0.957425) with  --  ATEIF3E-1; ATINT6; EIF3E; INT-6; INT6; TIF3E1
46 AT3G23940  --  has similar expression pattern (mutual information value=0.986082) with  --  RPS6; RPS6A  --  has similar expression pattern (mutual information value=1.04619) with  --  ATEBP1; ATG2; EBP1
47 AT3G23940  --  has similar expression pattern (mutual information value=0.986082) with  --  RPS6; RPS6A  --  has similar expression pattern (mutual information value=1.08981) with  --  AT4G16720
48 AT3G23940  --  has similar expression pattern (mutual information value=0.986082) with  --  RPS6; RPS6A  --  is modified by  --  ATPK19; ATPK2; ATS6K2; S6K2
49 AT3G23940  --  has similar expression pattern (mutual information value=0.963526) with  --  ATHD2A; HD2A; HDA3; HDT1  --  has similar expression pattern (mutual information value=0.941236) with  --  AT2G44120
50 AT3G23940  --  has similar expression pattern (mutual information value=0.963526) with  --  ATHD2A; HD2A; HDA3; HDT1  --  has similar expression pattern (mutual information value=0.894526) with  --  AT1G53645
51 AT3G23940  --  has similar expression pattern (mutual information value=0.963526) with  --  ATHD2A; HD2A; HDA3; HDT1  --  has similar expression pattern (mutual information value=1.24154) with  --  PPR596
52 AT3G23940  --  has similar expression pattern (mutual information value=0.963526) with  --  ATHD2A; HD2A; HDA3; HDT1  --  has similar expression pattern (mutual information value=1.31214) with  --  AT3G03920
53 AT3G23940  --  has similar expression pattern (mutual information value=0.963526) with  --  ATHD2A; HD2A; HDA3; HDT1  --  has similar expression pattern (mutual information value=1.11364) with  --  AT3G06530
54 AT3G23940  --  has similar expression pattern (mutual information value=0.963526) with  --  ATHD2A; HD2A; HDA3; HDT1  --  has similar expression pattern (mutual information value=0.97061) with  --  AT3G21540
55 AT3G23940  --  has similar expression pattern (mutual information value=0.963526) with  --  ATHD2A; HD2A; HDA3; HDT1  --  has similar expression pattern (mutual information value=1.03066) with  --  TOM40
56 AT3G23940  --  has similar expression pattern (mutual information value=0.963526) with  --  ATHD2A; HD2A; HDA3; HDT1  --  has similar expression pattern (mutual information value=1.04337) with  --  AT4G04940
57 AT3G23940  --  has similar expression pattern (mutual information value=0.963526) with  --  ATHD2A; HD2A; HDA3; HDT1  --  has similar expression pattern (mutual information value=0.900863) with  --  AT4G10480
58 AT3G23940  --  has similar expression pattern (mutual information value=0.963526) with  --  ATHD2A; HD2A; HDA3; HDT1  --  has similar expression pattern (mutual information value=0.957614) with  --  ATPRMT11; ATPRMT1B; PRMT11; PRMT1B
59 AT3G23940  --  has similar expression pattern (mutual information value=0.963526) with  --  ATHD2A; HD2A; HDA3; HDT1  --  has similar expression pattern (mutual information value=0.860435) with  --  AT4G34555
60 AT3G23940  --  has similar expression pattern (mutual information value=0.963526) with  --  ATHD2A; HD2A; HDA3; HDT1  --  has similar expression pattern (mutual information value=1.32732) with  --  ATPURM; EMB2818; PUR5
61 AT3G23940  --  has similar expression pattern (mutual information value=0.963526) with  --  ATHD2A; HD2A; HDA3; HDT1  --  has similar expression pattern (mutual information value=1.04887) with  --  ROC2
62 AT3G23940  --  has similar expression pattern (mutual information value=0.963526) with  --  ATHD2A; HD2A; HDA3; HDT1  --  has similar expression pattern (mutual information value=1.00661) with  --  AT5G02050
63 AT3G23940  --  has similar expression pattern (mutual information value=0.963526) with  --  ATHD2A; HD2A; HDA3; HDT1  --  has similar expression pattern (mutual information value=0.845533) with  --  ATHD2; ATHD2B; HD2; HD2B; HDA4; HDT02; HDT2
64 AT3G23940  --  has similar expression pattern (mutual information value=0.963526) with  --  ATHD2A; HD2A; HDA3; HDT1  --  has similar expression pattern (mutual information value=0.862432) with  --  AT5G23250
65 AT3G23940  --  has similar expression pattern (mutual information value=0.963526) with  --  ATHD2A; HD2A; HDA3; HDT1  --  has similar expression pattern (mutual information value=1.02599) with  --  AT4G15640
66 AT3G23940  --  has similar expression pattern (mutual information value=1.04186) with  --  AT5G02870  --  interacts with  --  AT5G22310
67 AT3G23940  --  has similar expression pattern (mutual information value=1.04186) with  --  AT5G02870  --  interacts with  --  AT5G58720
68 AT3G23940  --  has similar expression pattern (mutual information value=1.04186) with  --  AT5G02870  --  interacts with  --  ASIL1
69 AT3G23940  --  has similar expression pattern (mutual information value=1.04186) with  --  AT5G02870  --  interacts with  --  LSU1
70 AT3G23940  --  has similar expression pattern (mutual information value=1.04186) with  --  AT5G02870  --  interacts with  --  IAA11
71 AT3G23940  --  has similar expression pattern (mutual information value=1.04186) with  --  AT5G02870  --  has similar expression pattern (mutual information value=0.870094) with  --  AML1; ATRPS5A; RPS5A
72 AT3G23940  --  has similar expression pattern (mutual information value=1.04186) with  --  AT5G02870  --  has similar expression pattern (mutual information value=0.828134) with  --  AT2G20740
73 AT3G23940  --  has similar expression pattern (mutual information value=1.04186) with  --  AT5G02870  --  has similar expression pattern (mutual information value=1.0097) with  --  AT2G31610
74 AT3G23940  --  has similar expression pattern (mutual information value=1.04186) with  --  AT5G02870  --  has similar expression pattern (mutual information value=1.06255) with  --  AT3G10610
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