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A Graph Search-Empowered Integrative Database of Arabidopsis Signaling Transduction, Metabolism and Gene Regulation Networks   
Location:  Home > Details for node AT3G12860
Type: Protein GRN ID: np27874 Name:
Annotation: NOP56-like pre RNA processing ribonucleoprotein
Gene Locus: AT3G12860
Gene Expression (Affy ATH1 probeset): 257694_at    
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 Protein modification
 Protein-protein interaction
        also include predicted relationship
 Compound-protein interaction
 TF-target gene regulation
 Small RNA-target regulation
        also include predicted relationship
 Carrier and transported molecule
 Catalytic chemical reaction
 Co-expressed gene pair
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Relationship type:  protein modification     catalytic chemical reaction     protein-protein interaction    
compound-protein interaction     TF-target gene regulation     small RNA-target regulation    
co-expressed gene pair     carrier and transported molecule     family/complex and member
Relationship evidence:  Solid line: validated          Dashed line: predicted
Relationship direction: Arrow: positive          T shape: negative          None arrow: unknown or n/a
Hormone association: Thicker line: hormone related relationship         : hormone related Node
Node type:  Transcription factor or transcriptional regulator       Compound       Kinase
 Small regulatory RNA (miRNA & ta-siRNA)       Other nodes
No. Path
2 AT3G12860  --  has similar expression pattern (mutual information value=1.08671) with  --  RPS6; RPS6A
3 AT3G12860  --  has similar expression pattern (mutual information value=0.90971) with  --  AT4G34555
4 AT3G12860  --  has similar expression pattern (mutual information value=1.0499) with  --  ATHD2A; HD2A; HDA3; HDT1
5 AT3G12860  --  has similar expression pattern (mutual information value=1.1347) with  --  ATEBP1; ATG2; EBP1
6 AT3G12860  --  has similar expression pattern (mutual information value=1.08671) with  --  RPS6; RPS6A  --  interacts with  --  AHL29; SOB3
7 AT3G12860  --  has similar expression pattern (mutual information value=1.08671) with  --  RPS6; RPS6A  --  interacts with  --  AtMC9; AtMCP2f; MC9; MCP2f
8 AT3G12860  --  has similar expression pattern (mutual information value=1.08671) with  --  RPS6; RPS6A  --  interacts with  --  EDS1
9 AT3G12860  --  has similar expression pattern (mutual information value=1.08671) with  --  RPS6; RPS6A  --  has similar expression pattern (mutual information value=1.04397) with  --  RPL24A
10 AT3G12860  --  has similar expression pattern (mutual information value=1.08671) with  --  RPS6; RPS6A  --  has similar expression pattern (mutual information value=0.814274) with  --  ATRNR1; CLS8; R1; RNR1
11 AT3G12860  --  has similar expression pattern (mutual information value=1.08671) with  --  RPS6; RPS6A  --  has similar expression pattern (mutual information value=1.30658) with  --  RPL10; RPL10A; SAC52
12 AT3G12860  --  has similar expression pattern (mutual information value=1.08671) with  --  RPS6; RPS6A  --  has similar expression pattern (mutual information value=0.986082) with  --  AT3G23940
13 AT3G12860  --  has similar expression pattern (mutual information value=1.08671) with  --  RPS6; RPS6A  --  has similar expression pattern (mutual information value=0.957425) with  --  ATEIF3E-1; ATINT6; EIF3E; INT-6; INT6; TIF3E1
14 AT3G12860  --  has similar expression pattern (mutual information value=1.08671) with  --  RPS6; RPS6A  --  has similar expression pattern (mutual information value=1.35406) with  --  AT5G02870
15 AT3G12860  --  has similar expression pattern (mutual information value=1.08671) with  --  RPS6; RPS6A  --  has similar expression pattern (mutual information value=1.08981) with  --  AT4G16720
16 AT3G12860  --  has similar expression pattern (mutual information value=1.08671) with  --  RPS6; RPS6A  --  is modified by  --  ATPK19; ATPK2; ATS6K2; S6K2
17 AT3G12860  --  has similar expression pattern (mutual information value=0.90971) with  --  AT4G34555  --  has similar expression pattern (mutual information value=0.922566) with  --  AT2G40660
18 AT3G12860  --  has similar expression pattern (mutual information value=0.90971) with  --  AT4G34555  --  has similar expression pattern (mutual information value=0.905133) with  --  AT4G10480
19 AT3G12860  --  has similar expression pattern (mutual information value=0.90971) with  --  AT4G34555  --  has similar expression pattern (mutual information value=0.939399) with  --  AT5G03850
20 AT3G12860  --  has similar expression pattern (mutual information value=0.90971) with  --  AT4G34555  --  has similar expression pattern (mutual information value=0.933039) with  --  ATHD2; ATHD2B; HD2; HD2B; HDA4; HDT02; HDT2
21 AT3G12860  --  has similar expression pattern (mutual information value=1.0499) with  --  ATHD2A; HD2A; HDA3; HDT1  --  has similar expression pattern (mutual information value=0.941236) with  --  AT2G44120
22 AT3G12860  --  has similar expression pattern (mutual information value=1.0499) with  --  ATHD2A; HD2A; HDA3; HDT1  --  has similar expression pattern (mutual information value=1.58476) with  --  ATPRMT1A; PRMT1A
23 AT3G12860  --  has similar expression pattern (mutual information value=1.0499) with  --  ATHD2A; HD2A; HDA3; HDT1  --  has similar expression pattern (mutual information value=0.894526) with  --  AT1G53645
24 AT3G12860  --  has similar expression pattern (mutual information value=1.0499) with  --  ATHD2A; HD2A; HDA3; HDT1  --  has similar expression pattern (mutual information value=1.24154) with  --  PPR596
25 AT3G12860  --  has similar expression pattern (mutual information value=1.0499) with  --  ATHD2A; HD2A; HDA3; HDT1  --  has similar expression pattern (mutual information value=1.31214) with  --  AT3G03920
26 AT3G12860  --  has similar expression pattern (mutual information value=1.0499) with  --  ATHD2A; HD2A; HDA3; HDT1  --  has similar expression pattern (mutual information value=1.02992) with  --  HSP60-3A
27 AT3G12860  --  has similar expression pattern (mutual information value=1.0499) with  --  ATHD2A; HD2A; HDA3; HDT1  --  has similar expression pattern (mutual information value=1.03066) with  --  TOM40
28 AT3G12860  --  has similar expression pattern (mutual information value=1.0499) with  --  ATHD2A; HD2A; HDA3; HDT1  --  has similar expression pattern (mutual information value=0.849395) with  --  AT4G24830
29 AT3G12860  --  has similar expression pattern (mutual information value=1.0499) with  --  ATHD2A; HD2A; HDA3; HDT1  --  has similar expression pattern (mutual information value=0.957614) with  --  ATPRMT11; ATPRMT1B; PRMT11; PRMT1B
30 AT3G12860  --  has similar expression pattern (mutual information value=1.0499) with  --  ATHD2A; HD2A; HDA3; HDT1  --  has similar expression pattern (mutual information value=1.32732) with  --  ATPURM; EMB2818; PUR5
31 AT3G12860  --  has similar expression pattern (mutual information value=1.0499) with  --  ATHD2A; HD2A; HDA3; HDT1  --  has similar expression pattern (mutual information value=1.04887) with  --  ROC2
32 AT3G12860  --  has similar expression pattern (mutual information value=1.0499) with  --  ATHD2A; HD2A; HDA3; HDT1  --  has similar expression pattern (mutual information value=1.00661) with  --  AT5G02050
33 AT3G12860  --  has similar expression pattern (mutual information value=1.0499) with  --  ATHD2A; HD2A; HDA3; HDT1  --  has similar expression pattern (mutual information value=0.862432) with  --  AT5G23250
34 AT3G12860  --  has similar expression pattern (mutual information value=1.0499) with  --  ATHD2A; HD2A; HDA3; HDT1  --  has similar expression pattern (mutual information value=1.02599) with  --  AT4G15640
35 AT3G12860  --  has similar expression pattern (mutual information value=1.1347) with  --  ATEBP1; ATG2; EBP1  --  has similar expression pattern (mutual information value=0.947154) with  --  AT2G44860
36 AT3G12860  --  has similar expression pattern (mutual information value=1.1347) with  --  ATEBP1; ATG2; EBP1  --  has similar expression pattern (mutual information value=0.807038) with  --  AT1G24310
37 AT3G12860  --  has similar expression pattern (mutual information value=1.1347) with  --  ATEBP1; ATG2; EBP1  --  has similar expression pattern (mutual information value=1.13915) with  --  AT1G80750
38 AT3G12860  --  has similar expression pattern (mutual information value=1.1347) with  --  ATEBP1; ATG2; EBP1  --  has similar expression pattern (mutual information value=0.888339) with  --  DECOY
39 AT3G12860  --  has similar expression pattern (mutual information value=1.1347) with  --  ATEBP1; ATG2; EBP1  --  has similar expression pattern (mutual information value=1.30559) with  --  AT3G05560
40 AT3G12860  --  has similar expression pattern (mutual information value=1.1347) with  --  ATEBP1; ATG2; EBP1  --  has similar expression pattern (mutual information value=0.916323) with  --  RPSAb
41 AT3G12860  --  has similar expression pattern (mutual information value=1.1347) with  --  ATEBP1; ATG2; EBP1  --  has similar expression pattern (mutual information value=1.18063) with  --  AT3G11250
42 AT3G12860  --  has similar expression pattern (mutual information value=1.1347) with  --  ATEBP1; ATG2; EBP1  --  has similar expression pattern (mutual information value=0.986114) with  --  MEE49
43 AT3G12860  --  has similar expression pattern (mutual information value=1.1347) with  --  ATEBP1; ATG2; EBP1  --  has similar expression pattern (mutual information value=0.82366) with  --  AT.EIF4E1; CUM1; EIF4E; eIF4E1
44 AT3G12860  --  has similar expression pattern (mutual information value=1.1347) with  --  ATEBP1; ATG2; EBP1  --  has similar expression pattern (mutual information value=0.839779) with  --  AT4G35850
45 AT3G12860  --  has similar expression pattern (mutual information value=1.1347) with  --  ATEBP1; ATG2; EBP1  --  has similar expression pattern (mutual information value=1.09309) with  --  EMB1080
46 AT3G12860  --  has similar expression pattern (mutual information value=1.1347) with  --  ATEBP1; ATG2; EBP1  --  has similar expression pattern (mutual information value=1.31532) with  --  PYRD
47 AT3G12860  --  has similar expression pattern (mutual information value=1.1347) with  --  ATEBP1; ATG2; EBP1  --  has similar expression pattern (mutual information value=0.950364) with  --  DegP9
48 AT3G12860  --  has similar expression pattern (mutual information value=1.1347) with  --  ATEBP1; ATG2; EBP1  --  has similar expression pattern (mutual information value=1.23271) with  --  ATPHB3; PHB3
49 AT3G12860  --  has similar expression pattern (mutual information value=1.1347) with  --  ATEBP1; ATG2; EBP1  --  has similar expression pattern (mutual information value=1.1919) with  --  AT5G52650
50 AT3G12860  --  has similar expression pattern (mutual information value=1.1347) with  --  ATEBP1; ATG2; EBP1  --  has similar expression pattern (mutual information value=1.04009) with  --  AT5G62440
51 AT3G12860  --  has similar expression pattern (mutual information value=1.1347) with  --  ATEBP1; ATG2; EBP1  --  has similar expression pattern (mutual information value=0.907906) with  --  AT2G39795
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