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A Graph Search-Empowered Integrative Database of Arabidopsis Signaling Transduction, Metabolism and Gene Regulation Networks   
Location:  Home > Details for node AT5G56940
Type: Protein GRN ID: np39147 Name:
Annotation: Ribosomal protein S16 family protein
Gene Locus: AT5G56940
Gene Expression (Affy ATH1 probeset): 247935_at    
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 Protein modification
 Protein-protein interaction
        also include predicted relationship
 Compound-protein interaction
 TF-target gene regulation
 Small RNA-target regulation
        also include predicted relationship
 Carrier and transported molecule
 Catalytic chemical reaction
 Co-expressed gene pair
        with mutual information value >

  Ignore nodes having > relationships
 
Relationship type:  protein modification     catalytic chemical reaction     protein-protein interaction    
compound-protein interaction     TF-target gene regulation     small RNA-target regulation    
co-expressed gene pair     carrier and transported molecule     family/complex and member
Relationship evidence:  Solid line: validated          Dashed line: predicted
Relationship direction: Arrow: positive          T shape: negative          None arrow: unknown or n/a
Hormone association: Thicker line: hormone related relationship         : hormone related Node
Node type:  Transcription factor or transcriptional regulator       Compound       Kinase
 Small regulatory RNA (miRNA & ta-siRNA)       Other nodes
No. Path
2 AT5G56940  --  has similar expression pattern (mutual information value=1.07608) with  --  RPL16A
3 AT5G56940  --  has similar expression pattern (mutual information value=1.16838) with  --  AT1G08360
4 AT5G56940  --  has similar expression pattern (mutual information value=0.946894) with  --  AT1G07830
5 AT5G56940  --  has similar expression pattern (mutual information value=1.18153) with  --  AT1G29250
6 AT5G56940  --  has similar expression pattern (mutual information value=0.832726) with  --  AT1G20430
7 AT5G56940  --  has similar expression pattern (mutual information value=0.962442) with  --  AT3G13160
8 AT5G56940  --  has similar expression pattern (mutual information value=1.00398) with  --  AT3G18940
9 AT5G56940  --  has similar expression pattern (mutual information value=0.951729) with  --  AT3G60770
10 AT5G56940  --  has similar expression pattern (mutual information value=0.905982) with  --  AT5G11340
11 AT5G56940  --  has similar expression pattern (mutual information value=1.0497) with  --  AT5G18790
12 AT5G56940  --  has similar expression pattern (mutual information value=1.0497) with  --  AT3G06320
13 AT5G56940  --  has similar expression pattern (mutual information value=1.07608) with  --  RPL16A  --  has similar expression pattern (mutual information value=0.910879) with  --  AT2G42910
14 AT5G56940  --  has similar expression pattern (mutual information value=1.07608) with  --  RPL16A  --  has similar expression pattern (mutual information value=0.825931) with  --  EDA27; NOP10
15 AT5G56940  --  has similar expression pattern (mutual information value=1.07608) with  --  RPL16A  --  has similar expression pattern (mutual information value=0.823279) with  --  AT2G36160
16 AT5G56940  --  has similar expression pattern (mutual information value=1.07608) with  --  RPL16A  --  has similar expression pattern (mutual information value=0.964441) with  --  AT1G52930
17 AT5G56940  --  has similar expression pattern (mutual information value=1.07608) with  --  RPL16A  --  has similar expression pattern (mutual information value=0.934172) with  --  AT5G23900
18 AT5G56940  --  has similar expression pattern (mutual information value=1.07608) with  --  RPL16A  --  has similar expression pattern (mutual information value=0.933995) with  --  ATRAN3; RAN3
19 AT5G56940  --  has similar expression pattern (mutual information value=1.16838) with  --  AT1G08360  --  has similar expression pattern (mutual information value=1.00733) with  --  DECOY
20 AT5G56940  --  has similar expression pattern (mutual information value=1.16838) with  --  AT1G08360  --  has similar expression pattern (mutual information value=0.837541) with  --  ATEIF3G1; EIF3G1
21 AT5G56940  --  has similar expression pattern (mutual information value=1.16838) with  --  AT1G08360  --  has similar expression pattern (mutual information value=1.1364) with  --  AT3G09500
22 AT5G56940  --  has similar expression pattern (mutual information value=1.16838) with  --  AT1G08360  --  has similar expression pattern (mutual information value=0.867981) with  --  RPS18C
23 AT5G56940  --  has similar expression pattern (mutual information value=1.16838) with  --  AT1G08360  --  has similar expression pattern (mutual information value=1.07691) with  --  EMB1080
24 AT5G56940  --  has similar expression pattern (mutual information value=1.16838) with  --  AT1G08360  --  has similar expression pattern (mutual information value=0.981496) with  --  ATEIF3E-1; ATINT6; EIF3E; INT-6; INT6; TIF3E1
25 AT5G56940  --  has similar expression pattern (mutual information value=1.16838) with  --  AT1G08360  --  has similar expression pattern (mutual information value=0.8186) with  --  AT5G41970
26 AT5G56940  --  has similar expression pattern (mutual information value=1.16838) with  --  AT1G08360  --  has similar expression pattern (mutual information value=1.17944) with  --  AT5G27850
27 AT5G56940  --  has similar expression pattern (mutual information value=0.946894) with  --  AT1G07830  --  has similar expression pattern (mutual information value=0.841552) with  --  AT3G02220
28 AT5G56940  --  has similar expression pattern (mutual information value=0.946894) with  --  AT1G07830  --  has similar expression pattern (mutual information value=0.830959) with  --  AT3G06790
29 AT5G56940  --  has similar expression pattern (mutual information value=0.946894) with  --  AT1G07830  --  has similar expression pattern (mutual information value=0.837359) with  --  AT4G20020
30 AT5G56940  --  has similar expression pattern (mutual information value=0.946894) with  --  AT1G07830  --  has similar expression pattern (mutual information value=0.808519) with  --  AT4G27380
31 AT5G56940  --  has similar expression pattern (mutual information value=0.946894) with  --  AT1G07830  --  has similar expression pattern (mutual information value=0.85125) with  --  AT3G51010
32 AT5G56940  --  has similar expression pattern (mutual information value=0.946894) with  --  AT1G07830  --  has similar expression pattern (mutual information value=0.818044) with  --  AT3G56510
33 AT5G56940  --  has similar expression pattern (mutual information value=0.946894) with  --  AT1G07830  --  has similar expression pattern (mutual information value=0.844631) with  --  AT5G06360
34 AT5G56940  --  has similar expression pattern (mutual information value=0.946894) with  --  AT1G07830  --  has similar expression pattern (mutual information value=1.18432) with  --  AT5G09770
35 AT5G56940  --  has similar expression pattern (mutual information value=0.946894) with  --  AT1G07830  --  has similar expression pattern (mutual information value=0.847438) with  --  ATFBR1; ATFIB1; FBR1; FIB1; SKIP7
36 AT5G56940  --  has similar expression pattern (mutual information value=1.18153) with  --  AT1G29250  --  has similar expression pattern (mutual information value=0.948) with  --  AT2G44860
37 AT5G56940  --  has similar expression pattern (mutual information value=1.18153) with  --  AT1G29250  --  has similar expression pattern (mutual information value=1.08517) with  --  RPL24A
38 AT5G56940  --  has similar expression pattern (mutual information value=1.18153) with  --  AT1G29250  --  has similar expression pattern (mutual information value=1.03539) with  --  RPL27A; RPL27AB
39 AT5G56940  --  has similar expression pattern (mutual information value=1.18153) with  --  AT1G29250  --  has similar expression pattern (mutual information value=1.14889) with  --  TOM6
40 AT5G56940  --  has similar expression pattern (mutual information value=1.18153) with  --  AT1G29250  --  has similar expression pattern (mutual information value=1.04178) with  --  AT1G26740
41 AT5G56940  --  has similar expression pattern (mutual information value=1.18153) with  --  AT1G29250  --  has similar expression pattern (mutual information value=1.04287) with  --  AT2G43460
42 AT5G56940  --  has similar expression pattern (mutual information value=1.18153) with  --  AT1G29250  --  has similar expression pattern (mutual information value=0.956185) with  --  AT3G18760
43 AT5G56940  --  has similar expression pattern (mutual information value=1.18153) with  --  AT1G29250  --  has similar expression pattern (mutual information value=1.23975) with  --  AT1G07070
44 AT5G56940  --  has similar expression pattern (mutual information value=1.18153) with  --  AT1G29250  --  has similar expression pattern (mutual information value=0.994493) with  --  AT4G25740
45 AT5G56940  --  has similar expression pattern (mutual information value=1.18153) with  --  AT1G29250  --  has similar expression pattern (mutual information value=1.12316) with  --  AT3G43980
46 AT5G56940  --  has similar expression pattern (mutual information value=1.18153) with  --  AT1G29250  --  has similar expression pattern (mutual information value=1.12316) with  --  AT3G44010
47 AT5G56940  --  has similar expression pattern (mutual information value=1.18153) with  --  AT1G29250  --  has similar expression pattern (mutual information value=1.20315) with  --  AT3G44590
48 AT5G56940  --  has similar expression pattern (mutual information value=1.18153) with  --  AT1G29250  --  has similar expression pattern (mutual information value=0.915673) with  --  AT5G02610
49 AT5G56940  --  has similar expression pattern (mutual information value=1.18153) with  --  AT1G29250  --  has similar expression pattern (mutual information value=1.04157) with  --  AT5G03850
50 AT5G56940  --  has similar expression pattern (mutual information value=1.18153) with  --  AT1G29250  --  has similar expression pattern (mutual information value=1.233) with  --  ATTOM22-V; TOM22-V; TOM9-2
51 AT5G56940  --  has similar expression pattern (mutual information value=1.18153) with  --  AT1G29250  --  has similar expression pattern (mutual information value=1.10165) with  --  TIM8
52 AT5G56940  --  has similar expression pattern (mutual information value=1.18153) with  --  AT1G29250  --  has similar expression pattern (mutual information value=0.990711) with  --  AT2G39795
53 AT5G56940  --  has similar expression pattern (mutual information value=0.832726) with  --  AT1G20430  --  has similar expression pattern (mutual information value=0.984773) with  --  AT1G02870
54 AT5G56940  --  has similar expression pattern (mutual information value=0.832726) with  --  AT1G20430  --  has similar expression pattern (mutual information value=0.895657) with  --  EMB2811; RFC2
55 AT5G56940  --  has similar expression pattern (mutual information value=0.832726) with  --  AT1G20430  --  has similar expression pattern (mutual information value=0.831846) with  --  AT3G01740
56 AT5G56940  --  has similar expression pattern (mutual information value=0.832726) with  --  AT1G20430  --  has similar expression pattern (mutual information value=0.857854) with  --  AT3G25545
57 AT5G56940  --  has similar expression pattern (mutual information value=0.832726) with  --  AT1G20430  --  has similar expression pattern (mutual information value=0.963651) with  --  PBD1; PRCGB
58 AT5G56940  --  has similar expression pattern (mutual information value=0.832726) with  --  AT1G20430  --  has similar expression pattern (mutual information value=0.922502) with  --  AT5G38650
59 AT5G56940  --  has similar expression pattern (mutual information value=0.832726) with  --  AT1G20430  --  has similar expression pattern (mutual information value=0.992778) with  --  AT5G39850
60 AT5G56940  --  has similar expression pattern (mutual information value=0.832726) with  --  AT1G20430  --  has similar expression pattern (mutual information value=0.838198) with  --  ARS5; ATPSM30; PAF1
61 AT5G56940  --  has similar expression pattern (mutual information value=0.832726) with  --  AT1G20430  --  has similar expression pattern (mutual information value=0.840536) with  --  AT5G51510
62 AT5G56940  --  has similar expression pattern (mutual information value=0.832726) with  --  AT1G20430  --  has similar expression pattern (mutual information value=0.981913) with  --  AT4G15520
63 AT5G56940  --  has similar expression pattern (mutual information value=0.962442) with  --  AT3G13160  --  interacts with  --  LSU1
64 AT5G56940  --  has similar expression pattern (mutual information value=0.962442) with  --  AT3G13160  --  interacts with  --  AT3G27960
65 AT5G56940  --  has similar expression pattern (mutual information value=0.962442) with  --  AT3G13160  --  has similar expression pattern (mutual information value=0.97983) with  --  AT3G55750
66 AT5G56940  --  has similar expression pattern (mutual information value=0.962442) with  --  AT3G13160  --  has similar expression pattern (mutual information value=1.03517) with  --  AT1G55890
67 AT5G56940  --  has similar expression pattern (mutual information value=0.962442) with  --  AT3G13160  --  has similar expression pattern (mutual information value=1.15989) with  --  AT1G63660
68 AT5G56940  --  has similar expression pattern (mutual information value=0.962442) with  --  AT3G13160  --  has similar expression pattern (mutual information value=1.15428) with  --  AT3G11250
69 AT5G56940  --  has similar expression pattern (mutual information value=0.962442) with  --  AT3G13160  --  has similar expression pattern (mutual information value=0.903351) with  --  AT4G38890
70 AT5G56940  --  has similar expression pattern (mutual information value=0.962442) with  --  AT3G13160  --  has similar expression pattern (mutual information value=0.855137) with  --  AT5G02740
71 AT5G56940  --  has similar expression pattern (mutual information value=0.962442) with  --  AT3G13160  --  has similar expression pattern (mutual information value=0.997054) with  --  PYRD
72 AT5G56940  --  has similar expression pattern (mutual information value=1.00398) with  --  AT3G18940  --  has similar expression pattern (mutual information value=0.868401) with  --  AT1G70350
73 AT5G56940  --  has similar expression pattern (mutual information value=1.00398) with  --  AT3G18940  --  has similar expression pattern (mutual information value=0.865609) with  --  ATPAE1; PAE1
74 AT5G56940  --  has similar expression pattern (mutual information value=0.951729) with  --  AT3G60770  --  has similar expression pattern (mutual information value=1.28687) with  --  AT4G36130
75 AT5G56940  --  has similar expression pattern (mutual information value=0.951729) with  --  AT3G60770  --  has similar expression pattern (mutual information value=1.18982) with  --  AT2G21580
76 AT5G56940  --  has similar expression pattern (mutual information value=0.951729) with  --  AT3G60770  --  has similar expression pattern (mutual information value=1.25083) with  --  AT3G07110
77 AT5G56940  --  has similar expression pattern (mutual information value=0.951729) with  --  AT3G60770  --  has similar expression pattern (mutual information value=1.22729) with  --  AT3G09680
78 AT5G56940  --  has similar expression pattern (mutual information value=0.951729) with  --  AT3G60770  --  has similar expression pattern (mutual information value=1.22729) with  --  AT5G02960
79 AT5G56940  --  has similar expression pattern (mutual information value=0.951729) with  --  AT3G60770  --  has similar expression pattern (mutual information value=0.990245) with  --  AT3G12370
80 AT5G56940  --  has similar expression pattern (mutual information value=0.951729) with  --  AT3G60770  --  has similar expression pattern (mutual information value=1.13292) with  --  AT.EIF4E1; CUM1; EIF4E; eIF4E1
81 AT5G56940  --  has similar expression pattern (mutual information value=0.951729) with  --  AT3G60770  --  has similar expression pattern (mutual information value=1.06032) with  --  AT4G29390
82 AT5G56940  --  has similar expression pattern (mutual information value=0.951729) with  --  AT3G60770  --  has similar expression pattern (mutual information value=0.902326) with  --  RID3
83 AT5G56940  --  has similar expression pattern (mutual information value=0.951729) with  --  AT3G60770  --  has similar expression pattern (mutual information value=0.881966) with  --  RRP41
84 AT5G56940  --  has similar expression pattern (mutual information value=0.951729) with  --  AT3G60770  --  has similar expression pattern (mutual information value=1.20221) with  --  AT5G56670
85 AT5G56940  --  has similar expression pattern (mutual information value=0.905982) with  --  AT5G11340  --  has similar expression pattern (mutual information value=0.857745) with  --  ATRBP45A; RBP45A
86 AT5G56940  --  has similar expression pattern (mutual information value=1.0497) with  --  AT5G18790  --  has similar expression pattern (mutual information value=0.849281) with  --  AT1G24050
87 AT5G56940  --  has similar expression pattern (mutual information value=1.0497) with  --  AT5G18790  --  has similar expression pattern (mutual information value=1.16204) with  --  emb1129
88 AT5G56940  --  has similar expression pattern (mutual information value=1.0497) with  --  AT5G18790  --  has similar expression pattern (mutual information value=0.977269) with  --  Y14
89 AT5G56940  --  has similar expression pattern (mutual information value=1.0497) with  --  AT5G18790  --  has similar expression pattern (mutual information value=0.831768) with  --  AT1G36310
90 AT5G56940  --  has similar expression pattern (mutual information value=1.0497) with  --  AT5G18790  --  has similar expression pattern (mutual information value=0.962035) with  --  AT3G09700
91 AT5G56940  --  has similar expression pattern (mutual information value=1.0497) with  --  AT5G18790  --  has similar expression pattern (mutual information value=1.00414) with  --  AT3G09470
92 AT5G56940  --  has similar expression pattern (mutual information value=1.0497) with  --  AT5G18790  --  has similar expression pattern (mutual information value=0.818052) with  --  AT4G28200
93 AT5G56940  --  has similar expression pattern (mutual information value=1.0497) with  --  AT5G18790  --  has similar expression pattern (mutual information value=0.834324) with  --  AT3G61100
94 AT5G56940  --  has similar expression pattern (mutual information value=1.0497) with  --  AT5G18790  --  has similar expression pattern (mutual information value=1.20217) with  --  TOM5
95 AT5G56940  --  has similar expression pattern (mutual information value=1.0497) with  --  AT5G18790  --  has similar expression pattern (mutual information value=0.864104) with  --  AT5G18920
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