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A Graph Search-Empowered Integrative Database of Arabidopsis Signaling Transduction, Metabolism and Gene Regulation Networks   
Location:  Home > Details for node AT1G54380
Type: Protein GRN ID: np12108 Name:
Annotation: spliceosome protein-related
Gene Locus: AT1G54380
Gene Expression (Affy ATH1 probeset): 262964_at    
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 Protein modification
 Protein-protein interaction
        also include predicted relationship
 Compound-protein interaction
 TF-target gene regulation
 Small RNA-target regulation
        also include predicted relationship
 Carrier and transported molecule
 Catalytic chemical reaction
 Co-expressed gene pair
        with mutual information value >

  Ignore nodes having > relationships
 
Relationship type:  protein modification     catalytic chemical reaction     protein-protein interaction    
compound-protein interaction     TF-target gene regulation     small RNA-target regulation    
co-expressed gene pair     carrier and transported molecule     family/complex and member
Relationship evidence:  Solid line: validated          Dashed line: predicted
Relationship direction: Arrow: positive          T shape: negative          None arrow: unknown or n/a
Hormone association: Thicker line: hormone related relationship         : hormone related Node
Node type:  Transcription factor or transcriptional regulator       Compound       Kinase
 Small regulatory RNA (miRNA & ta-siRNA)       Other nodes
No. Path
2 AT1G54380  --  is the target gene of  --  ath-miR406
3 AT1G54380  --  has similar expression pattern (mutual information value=0.882088) with  --  AT2G47790
4 AT1G54380  --  has similar expression pattern (mutual information value=0.820928) with  --  CDC48C; emb1354
5 AT1G54380  --  has similar expression pattern (mutual information value=0.858497) with  --  AT3G19630
6 AT1G54380  --  has similar expression pattern (mutual information value=0.825976) with  --  AT4G22350
7 AT1G54380  --  has similar expression pattern (mutual information value=0.825976) with  --  AT4G22285
8 AT1G54380  --  has similar expression pattern (mutual information value=0.900606) with  --  AT3G63400
9 AT1G54380  --  is the target gene of  --  ath-miR406  --  inhibit the expression of  --  AT5G40340
10 AT1G54380  --  is the target gene of  --  ath-miR406  --  inhibit the expression of  --  AT3G54980
11 AT1G54380  --  is the target gene of  --  ath-miR406  --  inhibit the expression of  --  AT2G42510
12 AT1G54380  --  is the target gene of  --  ath-miR406  --  inhibit the expression of  --  SCY1
13 AT1G54380  --  is the target gene of  --  ath-miR406  --  inhibit the expression of  --  AT1G03660
14 AT1G54380  --  has similar expression pattern (mutual information value=0.882088) with  --  AT2G47790  --  has similar expression pattern (mutual information value=0.827121) with  --  emb1345
15 AT1G54380  --  has similar expression pattern (mutual information value=0.882088) with  --  AT2G47790  --  has similar expression pattern (mutual information value=0.821896) with  --  HEN2
16 AT1G54380  --  has similar expression pattern (mutual information value=0.882088) with  --  AT2G47790  --  has similar expression pattern (mutual information value=1.02507) with  --  AT2G18520
17 AT1G54380  --  has similar expression pattern (mutual information value=0.882088) with  --  AT2G47790  --  has similar expression pattern (mutual information value=0.883303) with  --  ATTOM22-I; TOM22-I
18 AT1G54380  --  has similar expression pattern (mutual information value=0.882088) with  --  AT2G47790  --  has similar expression pattern (mutual information value=0.978236) with  --  AT1G09660
19 AT1G54380  --  has similar expression pattern (mutual information value=0.882088) with  --  AT2G47790  --  has similar expression pattern (mutual information value=0.864982) with  --  ATRRP4; RRP4
20 AT1G54380  --  has similar expression pattern (mutual information value=0.882088) with  --  AT2G47790  --  has similar expression pattern (mutual information value=0.82475) with  --  AT1G09220
21 AT1G54380  --  has similar expression pattern (mutual information value=0.882088) with  --  AT2G47790  --  has similar expression pattern (mutual information value=0.985103) with  --  AT1G11240
22 AT1G54380  --  has similar expression pattern (mutual information value=0.882088) with  --  AT2G47790  --  has similar expression pattern (mutual information value=1.25255) with  --  AT1G07615
23 AT1G54380  --  has similar expression pattern (mutual information value=0.882088) with  --  AT2G47790  --  has similar expression pattern (mutual information value=1.0692) with  --  AT1G05410
24 AT1G54380  --  has similar expression pattern (mutual information value=0.882088) with  --  AT2G47790  --  has similar expression pattern (mutual information value=0.988669) with  --  AT1G12830
25 AT1G54380  --  has similar expression pattern (mutual information value=0.882088) with  --  AT2G47790  --  has similar expression pattern (mutual information value=0.851577) with  --  NF-YC10
26 AT1G54380  --  has similar expression pattern (mutual information value=0.882088) with  --  AT2G47790  --  has similar expression pattern (mutual information value=0.875603) with  --  AT3G03420
27 AT1G54380  --  has similar expression pattern (mutual information value=0.882088) with  --  AT2G47790  --  has similar expression pattern (mutual information value=0.832937) with  --  AT3G05810
28 AT1G54380  --  has similar expression pattern (mutual information value=0.882088) with  --  AT2G47790  --  has similar expression pattern (mutual information value=1.03638) with  --  AT3G17890
29 AT1G54380  --  has similar expression pattern (mutual information value=0.882088) with  --  AT2G47790  --  has similar expression pattern (mutual information value=1.11411) with  --  GTE01; GTE1; IMB1
30 AT1G54380  --  has similar expression pattern (mutual information value=0.882088) with  --  AT2G47790  --  has similar expression pattern (mutual information value=0.96511) with  --  AT2G34040
31 AT1G54380  --  has similar expression pattern (mutual information value=0.882088) with  --  AT2G47790  --  has similar expression pattern (mutual information value=0.885426) with  --  AT1G76860
32 AT1G54380  --  has similar expression pattern (mutual information value=0.882088) with  --  AT2G47790  --  has similar expression pattern (mutual information value=0.91515) with  --  AT4G01990
33 AT1G54380  --  has similar expression pattern (mutual information value=0.882088) with  --  AT2G47790  --  has similar expression pattern (mutual information value=0.90343) with  --  ATMLH1; MLH1
34 AT1G54380  --  has similar expression pattern (mutual information value=0.882088) with  --  AT2G47790  --  has similar expression pattern (mutual information value=0.804298) with  --  AT4G22720
35 AT1G54380  --  has similar expression pattern (mutual information value=0.882088) with  --  AT2G47790  --  has similar expression pattern (mutual information value=0.814133) with  --  AT3G42860
36 AT1G54380  --  has similar expression pattern (mutual information value=0.882088) with  --  AT2G47790  --  has similar expression pattern (mutual information value=1.10304) with  --  AT3G51270
37 AT1G54380  --  has similar expression pattern (mutual information value=0.882088) with  --  AT2G47790  --  has similar expression pattern (mutual information value=0.849313) with  --  AT5G06180
38 AT1G54380  --  has similar expression pattern (mutual information value=0.882088) with  --  AT2G47790  --  has similar expression pattern (mutual information value=0.800734) with  --  AT5G06110
39 AT1G54380  --  has similar expression pattern (mutual information value=0.882088) with  --  AT2G47790  --  has similar expression pattern (mutual information value=0.912465) with  --  AT5G11310
40 AT1G54380  --  has similar expression pattern (mutual information value=0.882088) with  --  AT2G47790  --  has similar expression pattern (mutual information value=1.08259) with  --  AT5G11760
41 AT1G54380  --  has similar expression pattern (mutual information value=0.882088) with  --  AT2G47790  --  has similar expression pattern (mutual information value=1.13635) with  --  ABO1; AtELP1; ELO2
42 AT1G54380  --  has similar expression pattern (mutual information value=0.882088) with  --  AT2G47790  --  has similar expression pattern (mutual information value=0.819296) with  --  AT5G13560
43 AT1G54380  --  has similar expression pattern (mutual information value=0.882088) with  --  AT2G47790  --  has similar expression pattern (mutual information value=1.07357) with  --  AT5G42060
44 AT1G54380  --  has similar expression pattern (mutual information value=0.882088) with  --  AT2G47790  --  has similar expression pattern (mutual information value=0.917987) with  --  MEF1
45 AT1G54380  --  has similar expression pattern (mutual information value=0.882088) with  --  AT2G47790  --  has similar expression pattern (mutual information value=0.971497) with  --  AT5G61880
46 AT1G54380  --  has similar expression pattern (mutual information value=0.882088) with  --  AT2G47790  --  has similar expression pattern (mutual information value=0.841012) with  --  AT5G63690
47 AT1G54380  --  has similar expression pattern (mutual information value=0.882088) with  --  AT2G47790  --  has similar expression pattern (mutual information value=0.910629) with  --  AT5G25080
48 AT1G54380  --  has similar expression pattern (mutual information value=0.882088) with  --  AT2G47790  --  has similar expression pattern (mutual information value=0.896197) with  --  AT5G25800
49 AT1G54380  --  has similar expression pattern (mutual information value=0.820928) with  --  CDC48C; emb1354  --  has similar expression pattern (mutual information value=0.933415) with  --  AT1G60830
50 AT1G54380  --  has similar expression pattern (mutual information value=0.820928) with  --  CDC48C; emb1354  --  has similar expression pattern (mutual information value=0.857418) with  --  AT1G77170
51 AT1G54380  --  has similar expression pattern (mutual information value=0.820928) with  --  CDC48C; emb1354  --  has similar expression pattern (mutual information value=0.857418) with  --  AT1G77150
52 AT1G54380  --  has similar expression pattern (mutual information value=0.820928) with  --  CDC48C; emb1354  --  has similar expression pattern (mutual information value=0.805118) with  --  AT1G06530
53 AT1G54380  --  has similar expression pattern (mutual information value=0.820928) with  --  CDC48C; emb1354  --  has similar expression pattern (mutual information value=0.815002) with  --  AT1G63980
54 AT1G54380  --  has similar expression pattern (mutual information value=0.820928) with  --  CDC48C; emb1354  --  has similar expression pattern (mutual information value=0.845734) with  --  AT1G48950
55 AT1G54380  --  has similar expression pattern (mutual information value=0.820928) with  --  CDC48C; emb1354  --  has similar expression pattern (mutual information value=0.824855) with  --  AT1G55930
56 AT1G54380  --  has similar expression pattern (mutual information value=0.820928) with  --  CDC48C; emb1354  --  has similar expression pattern (mutual information value=0.869625) with  --  AT1G74250
57 AT1G54380  --  has similar expression pattern (mutual information value=0.820928) with  --  CDC48C; emb1354  --  has similar expression pattern (mutual information value=0.97069) with  --  ATPRP40C; PRP40C
58 AT1G54380  --  has similar expression pattern (mutual information value=0.820928) with  --  CDC48C; emb1354  --  has similar expression pattern (mutual information value=0.909915) with  --  AT3G19650
59 AT1G54380  --  has similar expression pattern (mutual information value=0.820928) with  --  CDC48C; emb1354  --  has similar expression pattern (mutual information value=0.873639) with  --  VIL1; VRN5
60 AT1G54380  --  has similar expression pattern (mutual information value=0.820928) with  --  CDC48C; emb1354  --  has similar expression pattern (mutual information value=0.918741) with  --  AT4G39160
61 AT1G54380  --  has similar expression pattern (mutual information value=0.820928) with  --  CDC48C; emb1354  --  has similar expression pattern (mutual information value=1.0932) with  --  AT5G14440
62 AT1G54380  --  has similar expression pattern (mutual information value=0.820928) with  --  CDC48C; emb1354  --  has similar expression pattern (mutual information value=0.933277) with  --  AT5G18950
63 AT1G54380  --  has similar expression pattern (mutual information value=0.820928) with  --  CDC48C; emb1354  --  has similar expression pattern (mutual information value=0.935876) with  --  AT5G49000
64 AT1G54380  --  has similar expression pattern (mutual information value=0.820928) with  --  CDC48C; emb1354  --  has similar expression pattern (mutual information value=1.17357) with  --  AT5G57120
65 AT1G54380  --  has similar expression pattern (mutual information value=0.820928) with  --  CDC48C; emb1354  --  has similar expression pattern (mutual information value=0.863157) with  --  AT5G65490
66 AT1G54380  --  has similar expression pattern (mutual information value=0.820928) with  --  CDC48C; emb1354  --  has similar expression pattern (mutual information value=0.879835) with  --  AT5G27010
67 AT1G54380  --  has similar expression pattern (mutual information value=0.820928) with  --  CDC48C; emb1354  --  has similar expression pattern (mutual information value=0.879835) with  --  AT5G06350
68 AT1G54380  --  has similar expression pattern (mutual information value=0.858497) with  --  AT3G19630  --  has similar expression pattern (mutual information value=1.00986) with  --  ATRPA1A; ATRPA70A; RPA1A; RPA70A
69 AT1G54380  --  has similar expression pattern (mutual information value=0.858497) with  --  AT3G19630  --  has similar expression pattern (mutual information value=0.824374) with  --  emb1220
70 AT1G54380  --  has similar expression pattern (mutual information value=0.858497) with  --  AT3G19630  --  has similar expression pattern (mutual information value=0.824374) with  --  AT3G60610
71 AT1G54380  --  has similar expression pattern (mutual information value=0.858497) with  --  AT3G19630  --  has similar expression pattern (mutual information value=0.849291) with  --  AT1G60200
72 AT1G54380  --  has similar expression pattern (mutual information value=0.858497) with  --  AT3G19630  --  has similar expression pattern (mutual information value=0.882634) with  --  At-RSZ21; RSZ21; RSZP21; SRZ-21; SRZ21
73 AT1G54380  --  has similar expression pattern (mutual information value=0.858497) with  --  AT3G19630  --  has similar expression pattern (mutual information value=0.914769) with  --  GIF2
74 AT1G54380  --  has similar expression pattern (mutual information value=0.858497) with  --  AT3G19630  --  has similar expression pattern (mutual information value=0.881897) with  --  AT3G02320
75 AT1G54380  --  has similar expression pattern (mutual information value=0.858497) with  --  AT3G19630  --  has similar expression pattern (mutual information value=0.999539) with  --  LWD2
76 AT1G54380  --  has similar expression pattern (mutual information value=0.858497) with  --  AT3G19630  --  has similar expression pattern (mutual information value=0.828909) with  --  GTA02; GTA2
77 AT1G54380  --  has similar expression pattern (mutual information value=0.858497) with  --  AT3G19630  --  has similar expression pattern (mutual information value=0.828909) with  --  AT4G08360
78 AT1G54380  --  has similar expression pattern (mutual information value=0.858497) with  --  AT3G19630  --  has similar expression pattern (mutual information value=1.08826) with  --  At-RS31; ATRSP31; RS31; RSP31
79 AT1G54380  --  has similar expression pattern (mutual information value=0.858497) with  --  AT3G19630  --  has similar expression pattern (mutual information value=0.818568) with  --  AT5G06780
80 AT1G54380  --  has similar expression pattern (mutual information value=0.858497) with  --  AT3G19630  --  has similar expression pattern (mutual information value=1.03015) with  --  ATGSTT2; GST10B; GSTT2
81 AT1G54380  --  has similar expression pattern (mutual information value=0.858497) with  --  AT3G19630  --  has similar expression pattern (mutual information value=1.03015) with  --  ATGSTT3; GST10C; GSTT3
82 AT1G54380  --  has similar expression pattern (mutual information value=0.858497) with  --  AT3G19630  --  has similar expression pattern (mutual information value=1.01852) with  --  AT5G46840
83 AT1G54380  --  has similar expression pattern (mutual information value=0.858497) with  --  AT3G19630  --  has similar expression pattern (mutual information value=0.825706) with  --  AT5G49880
84 AT1G54380  --  has similar expression pattern (mutual information value=0.858497) with  --  AT3G19630  --  has similar expression pattern (mutual information value=0.840215) with  --  At-RS41; ATRSP41; RS41
85 AT1G54380  --  has similar expression pattern (mutual information value=0.858497) with  --  AT3G19630  --  has similar expression pattern (mutual information value=0.991438) with  --  AT5G53800
86 AT1G54380  --  has similar expression pattern (mutual information value=0.858497) with  --  AT3G19630  --  has similar expression pattern (mutual information value=1.02855) with  --  AT5G15570
87 AT1G54380  --  has similar expression pattern (mutual information value=0.858497) with  --  AT3G19630  --  has similar expression pattern (mutual information value=0.915077) with  --  AT4G16440
88 AT1G54380  --  has similar expression pattern (mutual information value=0.858497) with  --  AT3G19630  --  has similar expression pattern (mutual information value=0.803114) with  --  AT4G17010
89 AT1G54380  --  has similar expression pattern (mutual information value=0.858497) with  --  AT3G19630  --  has similar expression pattern (mutual information value=1.20397) with  --  FAR1
90 AT1G54380  --  has similar expression pattern (mutual information value=0.858497) with  --  AT3G19630  --  has similar expression pattern (mutual information value=1.0333) with  --  SMU2
91 AT1G54380  --  has similar expression pattern (mutual information value=0.825976) with  --  AT4G22350  --  has similar expression pattern (mutual information value=0.820312) with  --  AT2G33680
92 AT1G54380  --  has similar expression pattern (mutual information value=0.825976) with  --  AT4G22350  --  has similar expression pattern (mutual information value=0.935166) with  --  AT2G25720
93 AT1G54380  --  has similar expression pattern (mutual information value=0.825976) with  --  AT4G22350  --  has similar expression pattern (mutual information value=0.866572) with  --  AT1G79200
94 AT1G54380  --  has similar expression pattern (mutual information value=0.825976) with  --  AT4G22350  --  has similar expression pattern (mutual information value=0.895534) with  --  AT2G24990
95 AT1G54380  --  has similar expression pattern (mutual information value=0.825976) with  --  AT4G22350  --  has similar expression pattern (mutual information value=0.895534) with  --  AT5G37350
96 AT1G54380  --  has similar expression pattern (mutual information value=0.825976) with  --  AT4G22350  --  has similar expression pattern (mutual information value=0.99915) with  --  AT2G31725
97 AT1G54380  --  has similar expression pattern (mutual information value=0.825976) with  --  AT4G22350  --  has similar expression pattern (mutual information value=0.826379) with  --  AT1G54440
98 AT1G54380  --  has similar expression pattern (mutual information value=0.825976) with  --  AT4G22350  --  has similar expression pattern (mutual information value=1.09601) with  --  DRT111
99 AT1G54380  --  has similar expression pattern (mutual information value=0.825976) with  --  AT4G22350  --  has similar expression pattern (mutual information value=1.06124) with  --  ftsh10
100 AT1G54380  --  has similar expression pattern (mutual information value=0.825976) with  --  AT4G22350  --  has similar expression pattern (mutual information value=0.882883) with  --  AT1G71350
101 AT1G54380  --  has similar expression pattern (mutual information value=0.825976) with  --  AT4G22350  --  has similar expression pattern (mutual information value=0.803419) with  --  AT1G56350
102 AT1G54380  --  has similar expression pattern (mutual information value=0.825976) with  --  AT4G22350  --  has similar expression pattern (mutual information value=0.89978) with  --  UNE6
103 AT1G54380  --  has similar expression pattern (mutual information value=0.825976) with  --  AT4G22350  --  has similar expression pattern (mutual information value=0.910891) with  --  AT3G07170
104 AT1G54380  --  has similar expression pattern (mutual information value=0.825976) with  --  AT4G22350  --  has similar expression pattern (mutual information value=0.800827) with  --  AT3G23330
105 AT1G54380  --  has similar expression pattern (mutual information value=0.825976) with  --  AT4G22350  --  has similar expression pattern (mutual information value=0.8601) with  --  AT3G13845
106 AT1G54380  --  has similar expression pattern (mutual information value=0.825976) with  --  AT4G22350  --  has similar expression pattern (mutual information value=0.96868) with  --  AT3G12340
107 AT1G54380  --  has similar expression pattern (mutual information value=0.825976) with  --  AT4G22350  --  has similar expression pattern (mutual information value=0.909661) with  --  AT1G20300
108 AT1G54380  --  has similar expression pattern (mutual information value=0.825976) with  --  AT4G22350  --  has similar expression pattern (mutual information value=0.883541) with  --  AT4G07950
109 AT1G54380  --  has similar expression pattern (mutual information value=0.825976) with  --  AT4G22350  --  has similar expression pattern (mutual information value=0.883541) with  --  AT1G01210
110 AT1G54380  --  has similar expression pattern (mutual information value=0.825976) with  --  AT4G22350  --  has similar expression pattern (mutual information value=0.874498) with  --  AT4G17960
111 AT1G54380  --  has similar expression pattern (mutual information value=0.825976) with  --  AT4G22350  --  has similar expression pattern (mutual information value=0.805198) with  --  AT4G25210
112 AT1G54380  --  has similar expression pattern (mutual information value=0.825976) with  --  AT4G22350  --  has similar expression pattern (mutual information value=0.856174) with  --  AT4G30820
113 AT1G54380  --  has similar expression pattern (mutual information value=0.825976) with  --  AT4G22350  --  has similar expression pattern (mutual information value=0.922964) with  --  AT3G49890
114 AT1G54380  --  has similar expression pattern (mutual information value=0.825976) with  --  AT4G22350  --  has similar expression pattern (mutual information value=0.913142) with  --  ATO
115 AT1G54380  --  has similar expression pattern (mutual information value=0.825976) with  --  AT4G22350  --  has similar expression pattern (mutual information value=0.929963) with  --  AT5G50020
116 AT1G54380  --  has similar expression pattern (mutual information value=0.825976) with  --  AT4G22350  --  has similar expression pattern (mutual information value=0.90263) with  --  AT5G51130
117 AT1G54380  --  has similar expression pattern (mutual information value=0.825976) with  --  AT4G22350  --  has similar expression pattern (mutual information value=1.21167) with  --  NRPB6A; NRPD6A; NRPE6A
118 AT1G54380  --  has similar expression pattern (mutual information value=0.900606) with  --  AT3G63400  --  interacts with  --  At-SCL30; SCL30
119 AT1G54380  --  has similar expression pattern (mutual information value=0.900606) with  --  AT3G63400  --  interacts with  --  At-SCL28; SCL28
120 AT1G54380  --  has similar expression pattern (mutual information value=0.900606) with  --  AT3G63400  --  has similar expression pattern (mutual information value=0.911863) with  --  AT1G03760
121 AT1G54380  --  has similar expression pattern (mutual information value=0.900606) with  --  AT3G63400  --  has similar expression pattern (mutual information value=0.805386) with  --  AT1G79950
122 AT1G54380  --  has similar expression pattern (mutual information value=0.900606) with  --  AT3G63400  --  has similar expression pattern (mutual information value=0.864815) with  --  AT1G48560
123 AT1G54380  --  has similar expression pattern (mutual information value=0.900606) with  --  AT3G63400  --  has similar expression pattern (mutual information value=0.845958) with  --  AT4G31880
124 AT1G54380  --  has similar expression pattern (mutual information value=0.900606) with  --  AT3G63400  --  has similar expression pattern (mutual information value=0.853681) with  --  GAUT3
125 AT1G54380  --  has similar expression pattern (mutual information value=0.900606) with  --  AT3G63400  --  has similar expression pattern (mutual information value=0.818592) with  --  AT4G38440
126 AT1G54380  --  has similar expression pattern (mutual information value=0.900606) with  --  AT3G63400  --  has similar expression pattern (mutual information value=0.800048) with  --  EMB2789; MOS7
127 AT1G54380  --  has similar expression pattern (mutual information value=0.900606) with  --  AT3G63400  --  has similar expression pattern (mutual information value=0.903418) with  --  AT5G22840
128 AT1G54380  --  has similar expression pattern (mutual information value=0.900606) with  --  AT3G63400  --  is the target gene of  --  ath-miR842
   Funding by the National Science Foundation    Funding by the Oklahoma Center for the Advancement of Science & Technology    Additional funding by the Samuel Roberts Noble Foundation

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