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A Graph Search-Empowered Integrative Database of Arabidopsis Signaling Transduction, Metabolism and Gene Regulation Networks   
Location:  Home > Details for node AT4G38440
Type: Protein GRN ID: np34125 Name:
Annotation: LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase II-associated protein 1, C-terminal (InterPro:IPR013929), RNA polymerase II-associated protein 1, N-terminal (InterPro:IPR013930); Has 276 Blast hits to 220 proteins in 102 species: Archae - 0; Bacteria - 2; Metazoa - 151; Fungi - 65; Plants - 41; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).
Gene Locus: AT4G38440
Gene Expression (Affy ATH1 probeset): 252990_at    
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 Protein modification
 Protein-protein interaction
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 Compound-protein interaction
 TF-target gene regulation
 Small RNA-target regulation
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 Carrier and transported molecule
 Catalytic chemical reaction
 Co-expressed gene pair
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Relationship type:  protein modification     catalytic chemical reaction     protein-protein interaction    
compound-protein interaction     TF-target gene regulation     small RNA-target regulation    
co-expressed gene pair     carrier and transported molecule     family/complex and member
Relationship evidence:  Solid line: validated          Dashed line: predicted
Relationship direction: Arrow: positive          T shape: negative          None arrow: unknown or n/a
Hormone association: Thicker line: hormone related relationship         : hormone related Node
Node type:  Transcription factor or transcriptional regulator       Compound       Kinase
 Small regulatory RNA (miRNA & ta-siRNA)       Other nodes
No. Path
2 AT4G38440  --  has similar expression pattern (mutual information value=0.819572) with  --  AT-RS2Z33; ATRSZ33; RS2Z33; RSZ33
3 AT4G38440  --  has similar expression pattern (mutual information value=0.837813) with  --  AT4G10070
4 AT4G38440  --  has similar expression pattern (mutual information value=0.818592) with  --  AT3G63400
5 AT4G38440  --  has similar expression pattern (mutual information value=0.827356) with  --  AT5G24740
6 AT4G38440  --  has similar expression pattern (mutual information value=0.819572) with  --  AT-RS2Z33; ATRSZ33; RS2Z33; RSZ33  --  interacts with  --  AME3
7 AT4G38440  --  has similar expression pattern (mutual information value=0.819572) with  --  AT-RS2Z33; ATRSZ33; RS2Z33; RSZ33  --  interacts with  --  At-RS31; ATRSP31; RS31; RSP31
8 AT4G38440  --  has similar expression pattern (mutual information value=0.819572) with  --  AT-RS2Z33; ATRSZ33; RS2Z33; RSZ33  --  interacts with  --  At-SC35; ATSC35; SC35
9 AT4G38440  --  has similar expression pattern (mutual information value=0.819572) with  --  AT-RS2Z33; ATRSZ33; RS2Z33; RSZ33  --  interacts with  --  At-SCL30A; SCL30A
10 AT4G38440  --  has similar expression pattern (mutual information value=0.819572) with  --  AT-RS2Z33; ATRSZ33; RS2Z33; RSZ33  --  interacts with  --  At-SCL33; ATSCL33; SCL33; SR33
11 AT4G38440  --  has similar expression pattern (mutual information value=0.819572) with  --  AT-RS2Z33; ATRSZ33; RS2Z33; RSZ33  --  interacts with  --  At-SCL30; SCL30
12 AT4G38440  --  has similar expression pattern (mutual information value=0.819572) with  --  AT-RS2Z33; ATRSZ33; RS2Z33; RSZ33  --  interacts with  --  At-SCL28; SCL28
13 AT4G38440  --  has similar expression pattern (mutual information value=0.819572) with  --  AT-RS2Z33; ATRSZ33; RS2Z33; RSZ33  --  interacts with  --  At-RSZ22; RSZ22; RSZP22; SRZ-22; SRZ22
14 AT4G38440  --  has similar expression pattern (mutual information value=0.819572) with  --  AT-RS2Z33; ATRSZ33; RS2Z33; RSZ33  --  interacts with  --  At-RSZ21; RSZ21; RSZP21; SRZ-21; SRZ21
15 AT4G38440  --  has similar expression pattern (mutual information value=0.819572) with  --  AT-RS2Z33; ATRSZ33; RS2Z33; RSZ33  --  interacts with  --  At-SR34; ATSRP34; SR1; SR34; SRP34
16 AT4G38440  --  has similar expression pattern (mutual information value=0.819572) with  --  AT-RS2Z33; ATRSZ33; RS2Z33; RSZ33  --  interacts with  --  AT5G62600
17 AT4G38440  --  has similar expression pattern (mutual information value=0.819572) with  --  AT-RS2Z33; ATRSZ33; RS2Z33; RSZ33  --  interacts with  --  AT2G43370
18 AT4G38440  --  has similar expression pattern (mutual information value=0.819572) with  --  AT-RS2Z33; ATRSZ33; RS2Z33; RSZ33  --  interacts with  --  ATCYP59; CYP59
19 AT4G38440  --  has similar expression pattern (mutual information value=0.819572) with  --  AT-RS2Z33; ATRSZ33; RS2Z33; RSZ33  --  has similar expression pattern (mutual information value=1.08753) with  --  EMB2776; LIS
20 AT4G38440  --  has similar expression pattern (mutual information value=0.819572) with  --  AT-RS2Z33; ATRSZ33; RS2Z33; RSZ33  --  has similar expression pattern (mutual information value=0.809438) with  --  AT1G30880
21 AT4G38440  --  has similar expression pattern (mutual information value=0.819572) with  --  AT-RS2Z33; ATRSZ33; RS2Z33; RSZ33  --  has similar expression pattern (mutual information value=0.903536) with  --  AT1G06630
22 AT4G38440  --  has similar expression pattern (mutual information value=0.819572) with  --  AT-RS2Z33; ATRSZ33; RS2Z33; RSZ33  --  has similar expression pattern (mutual information value=0.823769) with  --  ANAC014; NAC014
23 AT4G38440  --  has similar expression pattern (mutual information value=0.819572) with  --  AT-RS2Z33; ATRSZ33; RS2Z33; RSZ33  --  has similar expression pattern (mutual information value=0.806288) with  --  BIM2
24 AT4G38440  --  has similar expression pattern (mutual information value=0.819572) with  --  AT-RS2Z33; ATRSZ33; RS2Z33; RSZ33  --  has similar expression pattern (mutual information value=0.844311) with  --  AT4G32910
25 AT4G38440  --  has similar expression pattern (mutual information value=0.819572) with  --  AT-RS2Z33; ATRSZ33; RS2Z33; RSZ33  --  has similar expression pattern (mutual information value=0.955899) with  --  At-RS2Z; RS2Z32; RSZ32
26 AT4G38440  --  has similar expression pattern (mutual information value=0.819572) with  --  AT-RS2Z33; ATRSZ33; RS2Z33; RSZ33  --  is the target gene of  --  ath-miR842
27 AT4G38440  --  has similar expression pattern (mutual information value=0.818592) with  --  AT3G63400  --  has similar expression pattern (mutual information value=0.942977) with  --  AT2G47790
28 AT4G38440  --  has similar expression pattern (mutual information value=0.818592) with  --  AT3G63400  --  has similar expression pattern (mutual information value=0.855433) with  --  ATRPA1A; ATRPA70A; RPA1A; RPA70A
29 AT4G38440  --  has similar expression pattern (mutual information value=0.818592) with  --  AT3G63400  --  has similar expression pattern (mutual information value=0.911863) with  --  AT1G03760
30 AT4G38440  --  has similar expression pattern (mutual information value=0.818592) with  --  AT3G63400  --  has similar expression pattern (mutual information value=0.805386) with  --  AT1G79950
31 AT4G38440  --  has similar expression pattern (mutual information value=0.818592) with  --  AT3G63400  --  has similar expression pattern (mutual information value=0.849395) with  --  GIF2
32 AT4G38440  --  has similar expression pattern (mutual information value=0.818592) with  --  AT3G63400  --  has similar expression pattern (mutual information value=0.952637) with  --  AT1G07615
33 AT4G38440  --  has similar expression pattern (mutual information value=0.818592) with  --  AT3G63400  --  has similar expression pattern (mutual information value=0.864815) with  --  AT1G48560
34 AT4G38440  --  has similar expression pattern (mutual information value=0.818592) with  --  AT3G63400  --  has similar expression pattern (mutual information value=0.937414) with  --  AT3G19630
35 AT4G38440  --  has similar expression pattern (mutual information value=0.818592) with  --  AT3G63400  --  has similar expression pattern (mutual information value=0.879028) with  --  AT4G22350
36 AT4G38440  --  has similar expression pattern (mutual information value=0.818592) with  --  AT3G63400  --  has similar expression pattern (mutual information value=0.879028) with  --  AT4G22285
37 AT4G38440  --  has similar expression pattern (mutual information value=0.818592) with  --  AT3G63400  --  has similar expression pattern (mutual information value=0.845958) with  --  AT4G31880
38 AT4G38440  --  has similar expression pattern (mutual information value=0.818592) with  --  AT3G63400  --  has similar expression pattern (mutual information value=0.853681) with  --  GAUT3
39 AT4G38440  --  has similar expression pattern (mutual information value=0.818592) with  --  AT3G63400  --  has similar expression pattern (mutual information value=0.800048) with  --  EMB2789; MOS7
40 AT4G38440  --  has similar expression pattern (mutual information value=0.818592) with  --  AT3G63400  --  has similar expression pattern (mutual information value=0.968377) with  --  ABO1; AtELP1; ELO2
41 AT4G38440  --  has similar expression pattern (mutual information value=0.818592) with  --  AT3G63400  --  has similar expression pattern (mutual information value=0.903418) with  --  AT5G22840
42 AT4G38440  --  has similar expression pattern (mutual information value=0.818592) with  --  AT3G63400  --  has similar expression pattern (mutual information value=0.869998) with  --  AT5G15570
43 AT4G38440  --  has similar expression pattern (mutual information value=0.827356) with  --  AT5G24740  --  has similar expression pattern (mutual information value=0.834796) with  --  AT4G16440
44 AT4G38440  --  has similar expression pattern (mutual information value=0.827356) with  --  AT5G24740  --  interacts with  --  SCR; SGR1
45 AT4G38440  --  has similar expression pattern (mutual information value=0.827356) with  --  AT5G24740  --  interacts with  --  SGR7; SHR
46 AT4G38440  --  has similar expression pattern (mutual information value=0.827356) with  --  AT5G24740  --  interacts with  --  NDL1
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