Welcome to HRGRN: A Graph Search-Empowered Integrative Database of Arabidopsis Signaling Transduction, Metabolism and Gene Regulation Networks

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	Welcome to HRGRN A Graph Search-Empowered Integrative Database of Arabidopsis Signaling Transduction, Metabolism and Gene Regulation Networks

Location: Home > Details for node AT2G42510

Type: Protein	GRN ID: np23781	Name:
Annotation:	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: spliceosome assembly, nuclear mRNA splicing, via spliceosome; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Survival motor neuron interacting protein 1 (InterPro:IPR007022); BEST Arabidopsis thaliana protein match is: spliceosome protein-related (TAIR:AT1G54380.1); Has 358 Blast hits to 335 proteins in 89 species: Archae - 4; Bacteria - 46; Metazoa - 66; Fungi - 14; Plants - 57; Viruses - 0; Other Eukaryotes - 171 (source: NCBI BLink).
Gene Locus:	AT2G42510
Gene Expression (Affy ATH1 probeset):

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Protein modification

Protein-protein interaction
also include predicted relationship

Compound-protein interaction

TF-target gene regulation

Small RNA-target regulation
also include predicted relationship

Carrier and transported molecule

Catalytic chemical reaction

Co-expressed gene pair
with mutual information value >

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Relationship type:	protein modification catalytic chemical reaction protein-protein interaction compound-protein interaction TF-target gene regulation small RNA-target regulation co-expressed gene pair carrier and transported molecule family/complex and member
Relationship evidence:	Solid line: validated Dashed line: predicted
Relationship direction:	Arrow: positive T shape: negative None arrow: unknown or n/a
Hormone association:	Thicker line: hormone related relationship : hormone related Node
Node type:	Transcription factor or transcriptional regulator Compound Kinase Small regulatory RNA (miRNA & ta-siRNA) Other nodes

No.	Path
2	AT2G42510 -- is the target gene of -- ath-miR406
3	AT2G42510 -- is the target gene of -- ath-miR406 -- inhibit the expression of -- AT5G40340
4	AT2G42510 -- is the target gene of -- ath-miR406 -- inhibit the expression of -- AT3G54980
5	AT2G42510 -- is the target gene of -- ath-miR406 -- inhibit the expression of -- SCY1
6	AT2G42510 -- is the target gene of -- ath-miR406 -- inhibit the expression of -- AT1G54380
7	AT2G42510 -- is the target gene of -- ath-miR406 -- inhibit the expression of -- AT1G03660

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