The Online Data Resource for Review:
Phenylpropanoids and plant defense -- an updated genomic perspective   
 
Location:  Home  > Species: Oryza sativa

Core phenylpropanoid pathway > 4-Coumarate: Coenzyme A ligase (4CL)
Seq ID Length Coordinates AffyProbes Description NCBI Protein Literature
LOC_Os01g67530.1 442  
Chr.  : Chr1
From  : 39251940
To    : 39255710
Strand: +
 N/A  Top 5 Hits: [ Putative 4-coumarate:coenzyme A ligase OS=Oryza sativa subsp. japonica E-value=0; AMP dependent CoA ligase, putative OS=Ricinus communis E-value=1e-98; 4-coumarate-coa ligase OS=Populus trichocarpa E-value=3e-92; Acyl:coa ligase OS=Populus trichocarpa E-value=3e-92; 4-coumarate-coa ligase OS=Populus trichocarpa E-value=8e-88; ] 
LOC_Os01g67540.1 598  
Chr.  : Chr1
From  : 39256795
To    : 39260319
Strand: +
 OsAffx.21790.1.S1_at  Top 5 Hits: [ Putative 4-coumarate:coenzyme A ligase OS=Oryza sativa subsp. japonica E-value=0; AMP dependent CoA ligase, putative OS=Ricinus communis E-value=0; Acyl:coa ligase OS=Populus trichocarpa E-value=0; 4-coumarate-coa ligase OS=Populus trichocarpa E-value=0; 4-coumarate-coa ligase OS=Populus trichocarpa E-value=0; ] 
LOC_Os02g08100.1 554  
Chr.  : Chr2
From  : 4280496
To    : 4285928
Strand: +
 Os.10669.1.S1_at  Top 5 Hits: [ 4-coumarate coenzyme A ligase OS=Zea mays E-value=0; 4-coumarate coenzyme A ligase 1 OS=Panicum virgatum E-value=0; 4-coumarate:CoA ligase OS=Neosinocalamus affinis E-value=0; cDNA clone:J023002B16, full insert sequence OS=Oryza sativa subsp. japonica E-value=0; 4-coumarate--CoA ligase 4CL3 OS=Lolium perenne E-value=0; ] 
LOC_Os02g46970.1 569  
Chr.  : Chr2
From  : 28671334
To    : 28675033
Strand: -
 N/A  Top 5 Hits: [ cDNA clone:001-200-D12, full insert sequence OS=Oryza sativa subsp. japonica E-value=0; 4-coumarate--CoA ligase 4CL1 OS=Lolium perenne E-value=0; AMP dependent CoA ligase, putative OS=Ricinus communis E-value=0; 4-Coumarate:CoA ligase OS=Populus trichocarpa E-value=0; 4-coumarate:CoA ligase OS=Ipomoea batatas E-value=0; ] 
LOC_Os03g05780.1 552  
Chr.  : Chr3
From  : 2882001
To    : 2886918
Strand: -
 N/A  Top 5 Hits: [ cDNA, clone: J075140K23, full insert sequence OS=Oryza sativa subsp. japonica E-value=0; 4-coumarate--CoA ligase 2 OS=Zea mays E-value=0; 4-coumarate-coa ligase OS=Populus trichocarpa E-value=0; AMP dependent CoA ligase, putative OS=Ricinus communis E-value=0; 4-coumarate-coa ligase OS=Populus trichocarpa E-value=0; ] 
LOC_Os04g24530.1 555  
Chr.  : Chr4
From  : 14063332
To    : 14065452
Strand: -
 OsAffx.13955.1.S1_at; OsAffx.13955.1.S1_x_at  Top 5 Hits: [ H0211A12.17 protein OS=Oryza sativa E-value=0; 4-coumarate--CoA ligase 2 OS=Zea mays E-value=0; AMP dependent CoA ligase, putative OS=Ricinus communis E-value=0; 4-coumarate:CoA ligase-like OS=Nicotiana sylvestris E-value=0; Acyl:coa ligase OS=Populus trichocarpa E-value=0; ] 
LOC_Os04g58710.1 518  
Chr.  : Chr4
From  : 34723331
To    : 34725551
Strand: -
 Os.22374.1.S2_a_at  Top 5 Hits: [ Os04g0683700 protein OS=Oryza sativa subsp. japonica E-value=0; H0306F12.7 protein OS=Oryza sativa E-value=0; Peroxisomal-coenzyme A synthetase OS=Zea mays E-value=0; AMP dependent CoA ligase, putative OS=Ricinus communis E-value=0; 4-coumarate-CoA ligase-like protein OS=Arabidopsis thaliana E-value=0; ] 
LOC_Os06g44620.1 559  
Chr.  : Chr6
From  : 26942097
To    : 26948892
Strand: -
 Os.8020.1.S1_at  Top 5 Hits: [ cDNA clone:J023002B16, full insert sequence OS=Oryza sativa subsp. japonica E-value=0; 4-coumarate:CoA ligase OS=Neosinocalamus affinis E-value=0; 4-coumarate--CoA ligase 4CL2 OS=Lolium perenne E-value=0; 4-coumarate coenzyme A ligase OS=Zea mays E-value=0; 4-coumarate coenzyme A ligase 1 OS=Panicum virgatum E-value=0; ] 
LOC_Os07g17970.1 558  
Chr.  : Chr7
From  : 10635451
To    : 10642146
Strand: +
 Os.15398.1.S1_at  Top 5 Hits: [ cDNA clone:002-148-E06, full insert sequence OS=Oryza sativa subsp. japonica E-value=0; ABP-1 OS=Triticum aestivum E-value=0; AMP dependent CoA ligase, putative OS=Ricinus communis E-value=0; Acyl:coa ligase OS=Populus trichocarpa E-value=0; 4-coumarate-coa ligase OS=Populus trichocarpa E-value=0; ] 
LOC_Os08g04770.1 591  
Chr.  : Chr8
From  : 2381158
To    : 2384164
Strand: +
 N/A  Top 5 Hits: [ Os08g0143300 protein OS=Oryza sativa subsp. japonica E-value=0; Os10g0578950 protein OS=Oryza sativa subsp. japonica E-value=0; 4-coumarate-coa ligase OS=Populus trichocarpa E-value=0; Acyl:coa ligase OS=Populus trichocarpa E-value=0; AMP dependent CoA ligase, putative OS=Ricinus communis E-value=0; ] 
LOC_Os08g14760.1 564  
Chr.  : Chr8
From  : 8873183
To    : 8877931
Strand: +
 Os.52921.1.S1_at  Top 5 Hits: [ cDNA clone:J023036P12, full insert sequence OS=Oryza sativa subsp. japonica E-value=0; 4-coumarate coenzyme A ligase 1 OS=Panicum virgatum E-value=0; 4-coumarate--CoA ligase 4CL2 OS=Lolium perenne E-value=0; 4-coumarate:CoA ligase OS=Neosinocalamus affinis E-value=0; cDNA clone:J023002B16, full insert sequence OS=Oryza sativa subsp. japonica E-value=0; ] 
LOC_Os08g34790.1 539  
Chr.  : Chr8
From  : 21869698
To    : 21872785
Strand: -
 Os.19375.1.S1_at  Top 5 Hits: [ 4-coumarate:coA ligase 2 OS=Rubus idaeus E-value=0; AMP dependent CoA ligase, putative OS=Ricinus communis E-value=0; 4-Coumarate:CoA ligase OS=Populus trichocarpa E-value=0; 4-coumarate:CoA ligase 1 OS=Populus trichocarpa x Populus deltoides E-value=0; 4-coumarate:CoA ligase 2 OS=Populus trichocarpa x Populus deltoides E-value=0; ] 
LOC_Os10g42800.1 564  
Chr.  : Chr10
From  : 23011693
To    : 23015058
Strand: -
 N/A  Top 5 Hits: [ Os10g0578950 protein OS=Oryza sativa subsp. japonica E-value=0; Os08g0143300 protein OS=Oryza sativa subsp. japonica E-value=0; 4-coumarate-coa ligase OS=Populus trichocarpa E-value=0; Acyl:coa ligase OS=Populus trichocarpa E-value=0; AMP dependent CoA ligase, putative OS=Ricinus communis E-value=0; ] 

Core phenylpropanoid pathway > Cinnamate 4-hydroxylase (C4H)
Seq ID Length Coordinates AffyProbes Description NCBI Protein Literature
LOC_Os01g60450.1 481  
Chr.  : Chr1
From  : 34960933
To    : 34962599
Strand: -
 OsAffx.2373.1.S1_at; OsAffx.2373.1.S1_x_at  Top 5 Hits: [ Cinnamate-4-hydroxylase OS=Canarium album E-value=0; Cinnamate-4-hydroxylase OS=Gossypium arboreum E-value=0; Cinnamic acid 4-hydroxylase OS=Lithospermum erythrorhizon E-value=0; Cinnamic acid 4-hydroxylase OS=Humulus lupulus E-value=0; Cinnamate 4-hydroxylase OS=Populus trichocarpa x Populus deltoides E-value=0; ] 
LOC_Os02g26770.1 533  
Chr.  : Chr2
From  : 15710955
To    : 15712987
Strand: -
 N/A  Top 5 Hits: [ Os02g0467000 protein OS=Oryza sativa subsp. japonica E-value=0; Os02g0467600 protein OS=Oryza sativa subsp. japonica E-value=0; Trans-cinnamate 4-monooxygenase OS=Zea mays E-value=0; Trans-cinnamate 4-monooxygenase OS=Populus trichocarpa E-value=0; Cinnamate 4-hydroxylase CYP73 OS=Citrus sinensis E-value=0; ] 
LOC_Os02g26810.1 533  
Chr.  : Chr2
From  : 15728953
To    : 15731064
Strand: +
 Os.11417.1.S1_at  Top 5 Hits: [ Os02g0467600 protein OS=Oryza sativa subsp. japonica E-value=0; Os02g0467000 protein OS=Oryza sativa subsp. japonica E-value=0; Trans-cinnamate 4-monooxygenase OS=Zea mays E-value=0; Trans-cinnamate 4-monooxygenase OS=Populus trichocarpa E-value=0; Cinnamate 4-hydroxylase CYP73 OS=Citrus sinensis E-value=0; ] 
LOC_Os05g25640.1 500  
Chr.  : Chr5
From  : 14842530
To    : 14847089
Strand: -
 N/A  Top 5 Hits: [ Os05g0320700 protein OS=Oryza sativa subsp. japonica E-value=0; Cytochrome P450 OS=Triticum aestivum E-value=0; Trans-cinnamate 4-monooxygenase OS=Zea mays E-value=0; Cinnamic acid 4-hydroxylase (Fragment) OS=Phyllostachys edulis E-value=0; Cinnamate-4-hydroxylase OS=Canarium album E-value=0; ] 

Core phenylpropanoid pathway > L-Phenylalanine ammonia-lyase (PAL)
Seq ID Length Coordinates AffyProbes Description NCBI Protein Literature
LOC_Os02g41630.2 701  
Chr.  : Chr2
From  : 24967517
To    : 24971467
Strand: -
 Os.9330.1.S1_x_at; Os.9330.1.S2_x_at; Os.9330.2.S1_a_at; Os.9330.4.S1_x_at  Top 5 Hits: [ Phenylalanine ammonia-lyase OS=Oryza sativa subsp. japonica E-value=0; Phenylanlanine ammonia-lyase OS=Phyllostachys edulis E-value=0; Phenylalanine ammonia-lyase OS=Zea mays E-value=0; Phenylalanine ammonia-lyase OS=Sorghum bicolor E-value=0; Phenylalanine ammonia-lyase OS=Zea mays E-value=0; ] 
LOC_Os02g41650.1 718  
Chr.  : Chr2
From  : 24979386
To    : 24983519
Strand: -
 Os.28397.1.S1_at; Os.28397.1.S2_x_at; Os.28397.1.S3_at  Top 5 Hits: [ Phenylalanine ammonia-lyase OS=Oryza sativa subsp. japonica E-value=0; Phenylalanine ammonia-lyase OS=Sorghum bicolor E-value=0; Phenylalanine ammonia-lyase OS=Oryza sativa subsp. indica E-value=0; Phenylalanine ammonia-lyase OS=Zea mays E-value=0; Phenylalanine ammonia-lyase OS=Zea mays E-value=0; ] 
LOC_Os02g41670.1 713  
Chr.  : Chr2
From  : 24986958
To    : 24989545
Strand: -
 N/A  Top 5 Hits: [ Phenylalanine ammonia-lyase OS=Oryza sativa subsp. japonica E-value=0; Phenylalanine ammonia-lyase OS=Oryza sativa subsp. indica E-value=0; Phenylalanine ammonia-lyase OS=Sorghum bicolor E-value=0; Phenylalanine ammonia-lyase OS=Oryza sativa subsp. japonica E-value=0; Phenylalanine ammonia-lyase OS=Sorghum bicolor E-value=0; ] 
LOC_Os02g41680.1 713  
Chr.  : Chr2
From  : 25000598
To    : 25003252
Strand: -
 Os.25687.1.S1_at; Os.25687.1.S1_x_at  Top 5 Hits: [ Phenylalanine ammonia-lyase OS=Oryza sativa subsp. japonica E-value=0; Phenylalanine ammonia-lyase OS=Phyllostachys edulis E-value=0; Phenylalanine ammonia-lyase OS=Phyllostachys parvifolia E-value=0; Phenylalanine ammonia-lyase OS=Bambusa oldhamii E-value=0; Phenylalanine ammonia-lyase OS=Phyllostachys dulcis E-value=0; ] 
LOC_Os04g43760.1 707  
Chr.  : Chr4
From  : 25721724
To    : 25724949
Strand: -
 Os.37893.1.S1_at  Top 5 Hits: [ Phenylalanine ammonia-lyase OS=Oryza sativa E-value=0; Phenylalanine ammonia-lyase OS=Oryza sativa subsp. japonica E-value=0; Phenylalanine ammonia-lyase OS=Oryza sativa subsp. indica E-value=0; Phenylalanine ammonia-lyase OS=Oryza sativa subsp. japonica E-value=0; Phenylalanine ammonia-lyase OS=Sorghum bicolor E-value=0; ] 
LOC_Os04g43800.1 714  
Chr.  : Chr4
From  : 25741863
To    : 25744607
Strand: -
 Os.52536.1.S1_at  Top 5 Hits: [ Phenylalanine ammonia-lyase OS=Oryza sativa E-value=0; Phenylalanine ammonia-lyase OS=Oryza sativa subsp. japonica E-value=0; Phenylalanine ammonia-lyase OS=Oryza sativa subsp. indica E-value=0; Phenylalanine ammonia-lyase (Fragment) OS=Phyllostachys edulis E-value=0; Phenylalanine ammonia-lyase OS=Zea mays E-value=0; ]  Q7F929 Sakurai et al.,2001
LOC_Os05g35290.1 716  
Chr.  : Chr5
From  : 20890851
To    : 20893364
Strand: -
 N/A  Top 5 Hits: [ Phenylalanine ammonia-lyase OS=Oryza sativa subsp. japonica E-value=0; Phenylalanine ammonia-lyase OS=Oryza sativa subsp. indica E-value=0; Phenylalanine ammonia-lyase OS=Oryza sativa subsp. indica E-value=0; Phenylalanine ammonia-lyase OS=Phyllostachys edulis E-value=0; Phenylalanine ammonia-lyase OS=Oryza sativa subsp. japonica E-value=0; ] 
LOC_Os11g48110.1 700  
Chr.  : Chr11
From  : 28489269
To    : 28491523
Strand: +
 N/A  Top 5 Hits: [ Phenylalanine ammonia-lyase OS=Oryza sativa subsp. japonica E-value=0; Phenylalanine ammonia-lyase OS=Oryza sativa subsp. japonica E-value=0; Phenylalanine ammonia-lyase OS=Sorghum bicolor E-value=0; Os12g0520200 protein (Fragment) OS=Oryza sativa subsp. japonica E-value=0; Phenylalanine ammonia-lyase OS=Sorghum bicolor E-value=0; ] 
LOC_Os12g33610.1 680  
Chr.  : Chr12
From  : 20264335
To    : 20266852
Strand: +
 Os.27728.1.S1_at  Top 5 Hits: [ Phenylalanine ammonia-lyase OS=Oryza sativa subsp. japonica E-value=0; Phenylalanine ammonia-lyase OS=Oryza sativa subsp. japonica E-value=0; Phenylalanine ammonia-lyase OS=Sorghum bicolor E-value=0; Os12g0520200 protein (Fragment) OS=Oryza sativa subsp. japonica E-value=0; Phenylalanine ammonia-lyase OS=Sorghum bicolor E-value=0; ] 

Flavonoid core > Chalcone isomerase (CHI)
Seq ID Length Coordinates AffyProbes Description NCBI Protein Literature
Os02g21520 280  
Chr.  : Chr2
From  : 12765278
To    : 12772118
Strand: +
 Os.17608.1.S1_s_at  Top 5 Hits: [ Os02g0320300 protein OS=Oryza sativa subsp. japonica E-value=0; Chalcone isomerase 3 OS=Zea mays E-value=3e-66; Chalcone isomerase-like protein OS=Populus trichocarpa E-value=8e-45; Chalcone isomerase, putative OS=Arabidopsis thaliana E-value=3e-44; Chalcone isomerase, putative; 94270-95700 OS=Arabidopsis thaliana E-value=8e-44; ] 
Os07g38390 263  
Chr.  : Chr7
From  : 23074986
To    : 23077834
Strand: -
 OsAffx.16613.1.S1_at  Top 5 Hits: [ Os07g0571600 protein OS=Oryza sativa subsp. japonica E-value=0; Chalcone isomerase OS=Zea mays E-value=3e-79; Os02g0778500 protein OS=Oryza sativa subsp. japonica E-value=9e-28; ] 
Os11g02440 212  
Chr.  : Chr11
From  : 728198
To    : 731757
Strand: -
 Os.37295.1.S1_at  Top 5 Hits: [ Chalcone-flavanone isomerase family protein, expressed OS=Oryza sativa subsp. japonica E-value=0; Os12g0115700 protein OS=Oryza sativa subsp. japonica E-value=0; Chalcone--flavonone isomerase OS=Zea mays E-value=7e-74; Chalcone-flavanone isomerase OS=Elaeis guineensis var. tenera E-value=9e-74; Chalcone--flavonone isomerase OS=Zea mays E-value=7e-73; ] 
Os12g02370 212  
Chr.  : Chr12
From  : 765434
To    : 767581
Strand: -
 Os.6354.1.S1_at  Top 5 Hits: [ Os12g0115700 protein OS=Oryza sativa subsp. japonica E-value=0; Chalcone-flavanone isomerase family protein, expressed OS=Oryza sativa subsp. japonica E-value=0; Chalcone-flavanone isomerase OS=Elaeis guineensis var. tenera E-value=4e-75; Chalcone--flavonone isomerase OS=Zea mays E-value=1e-74; Chalcone--flavonone isomerase OS=Zea mays E-value=2e-73; ] 

Flavonoid core > Chalcone synthase (CHS)
Seq ID Length Coordinates AffyProbes Description NCBI Protein Literature
Os01g41834 399  
Chr.  : Chr1
From  : 23687245
To    : 23690987
Strand: -
 OsAffx.23626.1.S1_at  Top 5 Hits: [ Chalcone synthase-like OS=Oryza sativa subsp. japonica E-value=0; Chalcone and stilbene synthases, N-terminal domain containing protein, expressed OS=Oryza sativa subsp. japonica E-value=0; OSIGBa0148I18.6 protein OS=Oryza sativa E-value=0; Os04g0103900 protein OS=Oryza sativa subsp. japonica E-value=0; Os07g0214900 protein OS=Oryza sativa subsp. japonica E-value=6e-88; ] 
Os04g01354 393  
Chr.  : Chr4
From  : 257818
To    : 262006
Strand: -
 Os.53952.1.S1_at  Top 5 Hits: [ Os04g0103900 protein OS=Oryza sativa subsp. japonica E-value=0; OSIGBa0148I18.6 protein OS=Oryza sativa E-value=0; Chalcone and stilbene synthases, N-terminal domain containing protein, expressed OS=Oryza sativa subsp. japonica E-value=2e-97; Chalcone synthase OS=Thlaspi arvense E-value=7e-84; Chalcone synthase OS=Cardamine penzesii E-value=3e-83; ] 
Os04g23940 373  
Chr.  : Chr4
From  : 13680696
To    : 13682076
Strand: -
 N/A  Top 5 Hits: [ OSJNBa0079M09.15 protein OS=Oryza sativa subsp. japonica E-value=0; OSIGBa0092O07.7 protein OS=Oryza sativa E-value=0; Chalcone and stilbene synthases, N-terminal domain containing protein, expressed OS=Oryza sativa subsp. japonica E-value=0; OSIGBa0148I18.6 protein OS=Oryza sativa E-value=2e-80; Os04g0103900 protein OS=Oryza sativa subsp. japonica E-value=6e-80; ] 
Os05g12180 392  
Chr.  : Chr5
From  : 6975785
To    : 6977991
Strand: -
 OsAffx.26850.1.S1_x_at  Top 5 Hits: [ Os05g0212900 protein OS=Oryza sativa subsp. japonica E-value=0; Putative chalcone synthase OS=Oryza sativa E-value=0; Os10g0158400 protein OS=Oryza sativa subsp. japonica E-value=0; Os10g0167900 protein OS=Oryza sativa subsp. japonica E-value=0; Os10g0177300 protein OS=Oryza sativa subsp. japonica E-value=0; ] 
Os05g12190 312  
Chr.  : Chr5
From  : 6982056
To    : 6983471
Strand: -
 OsAffx.26850.2.S1_at  Top 5 Hits: [ Os05g0212900 protein OS=Oryza sativa subsp. japonica E-value=0; Putative chalcone synthase OS=Oryza sativa E-value=0; Os10g0158400 protein OS=Oryza sativa subsp. japonica E-value=0; Os10g0167900 protein OS=Oryza sativa subsp. japonica E-value=0; ] 
Os05g12210 392  
Chr.  : Chr5
From  : 6991278
To    : 6993644
Strand: -
 N/A  Top 5 Hits: [ Os05g0212900 protein OS=Oryza sativa subsp. japonica E-value=0; Putative chalcone synthase OS=Oryza sativa E-value=0; Os10g0158400 protein OS=Oryza sativa subsp. japonica E-value=0; Os10g0167900 protein OS=Oryza sativa subsp. japonica E-value=0; Os10g0177300 protein OS=Oryza sativa subsp. japonica E-value=0; ] 
Os05g12240 392  
Chr.  : Chr5
From  : 7004010
To    : 7005396
Strand: -
 N/A  Top 5 Hits: [ Os05g0212900 protein OS=Oryza sativa subsp. japonica E-value=0; Putative chalcone synthase OS=Oryza sativa E-value=0; Os10g0158400 protein OS=Oryza sativa subsp. japonica E-value=0; Os10g0167900 protein OS=Oryza sativa subsp. japonica E-value=0; Os10g0177300 protein OS=Oryza sativa subsp. japonica E-value=0; ] 
Os07g11440 403  
Chr.  : Chr7
From  : 6293616
To    : 6295308
Strand: -
 N/A  Top 5 Hits: [ Os07g0214900 protein OS=Oryza sativa subsp. japonica E-value=0; Chalcone synthase OS=Triticum aestivum E-value=0; Chalcone synthase OS=Triticum aestivum E-value=0; Chalcone synthase OS=Zea mays E-value=0; Chalcone synthase OS=Triticum aestivum E-value=0; ] 
Os07g17010 402  
Chr.  : Chr7
From  : 10017732
To    : 10019742
Strand: +
 Os.56176.1.S1_at  Top 5 Hits: [ Os07g0271500 protein OS=Oryza sativa subsp. japonica E-value=0; Os07g0525900 protein OS=Oryza sativa subsp. japonica E-value=0; Os07g0526400 protein OS=Oryza sativa subsp. japonica E-value=0; Chalcone and stilbene synthases, N-terminal domain containing protein OS=Oryza sativa subsp. japonica E-value=1e-97; Chalcone synthase 11 OS=Rubus idaeus E-value=4e-94; ] 
Os07g31770 405  
Chr.  : Chr7
From  : 18872797
To    : 18874933
Strand: -
 Os.57102.1.S1_at  Top 5 Hits: [ Os07g0501100 protein OS=Oryza sativa subsp. japonica E-value=0; Putative chalcone synthase OS=Oryza sativa E-value=0; Os10g0158400 protein OS=Oryza sativa subsp. japonica E-value=0; ] 
Os07g34140 398  
Chr.  : Chr7
From  : 20419145
To    : 20420523
Strand: -
 N/A  Top 5 Hits: [ Os07g0525500 protein OS=Oryza sativa subsp. japonica E-value=0; Putative chalcone synthase OS=Oryza sativa subsp. japonica E-value=0; Os07g0525900 protein OS=Oryza sativa subsp. japonica E-value=0; Os07g0526400 protein OS=Oryza sativa subsp. japonica E-value=0; Os07g0271500 protein OS=Oryza sativa subsp. japonica E-value=0; ] 
Os07g34190 398  
Chr.  : Chr7
From  : 20454519
To    : 20455855
Strand: -
 N/A  Top 5 Hits: [ Os07g0525900 protein OS=Oryza sativa subsp. japonica E-value=0; Os07g0526400 protein OS=Oryza sativa subsp. japonica E-value=0; Os07g0525500 protein OS=Oryza sativa subsp. japonica E-value=0; Putative chalcone synthase OS=Oryza sativa subsp. japonica E-value=0; Os07g0271500 protein OS=Oryza sativa subsp. japonica E-value=0; ] 
Os07g34260 399  
Chr.  : Chr7
From  : 20503688
To    : 20505409
Strand: -
 N/A  Top 5 Hits: [ Os07g0526400 protein OS=Oryza sativa subsp. japonica E-value=0; Os07g0525900 protein OS=Oryza sativa subsp. japonica E-value=0; Os07g0525500 protein OS=Oryza sativa subsp. japonica E-value=0; Putative chalcone synthase OS=Oryza sativa subsp. japonica E-value=0; Os07g0271500 protein OS=Oryza sativa subsp. japonica E-value=0; ] 
Os10g07040 398  
Chr.  : Chr10
From  : 3695774
To    : 3697751
Strand: +
 OsAffx.18163.1.S1_at  Top 5 Hits: [ Putative chalcone synthase OS=Oryza sativa E-value=0; Os10g0158400 protein OS=Oryza sativa subsp. japonica E-value=0; Os10g0167900 protein OS=Oryza sativa subsp. japonica E-value=0; Os05g0212900 protein OS=Oryza sativa subsp. japonica E-value=0; Os10g0177300 protein OS=Oryza sativa subsp. japonica E-value=0; ] 
Os10g07616 398  
Chr.  : Chr10
From  : 4243440
To    : 4245680
Strand: +
 N/A  Top 5 Hits: [ Putative chalcone synthase OS=Oryza sativa E-value=0; Os10g0158400 protein OS=Oryza sativa subsp. japonica E-value=0; Os10g0167900 protein OS=Oryza sativa subsp. japonica E-value=0; Os05g0212900 protein OS=Oryza sativa subsp. japonica E-value=0; Os10g0177300 protein OS=Oryza sativa subsp. japonica E-value=0; ] 
Os10g08620 399  
Chr.  : Chr10
From  : 4697455
To    : 4699431
Strand: +
 OsAffx.20713.1.S1_at  Top 5 Hits: [ Os10g0167900 protein OS=Oryza sativa subsp. japonica E-value=0; Putative chalcone synthase OS=Oryza sativa E-value=0; Os10g0158400 protein OS=Oryza sativa subsp. japonica E-value=0; Os05g0212900 protein OS=Oryza sativa subsp. japonica E-value=0; Os10g0177300 protein OS=Oryza sativa subsp. japonica E-value=0; ] 
Os10g08670 343  
Chr.  : Chr10
From  : 4716813
To    : 4718345
Strand: +
 OsAffx.30342.1.S1_at  Top 5 Hits: [ Putative chalcone synthase OS=Oryza sativa E-value=0; Os10g0167900 protein OS=Oryza sativa subsp. japonica E-value=0; Putative chalcone synthase OS=Oryza sativa E-value=0; Os10g0158400 protein OS=Oryza sativa subsp. japonica E-value=0; Os05g0212900 protein OS=Oryza sativa subsp. japonica E-value=0; ] 
Os10g08710 294  
Chr.  : Chr10
From  : 4741908
To    : 4742825
Strand: +
 OsAffx.20709.1.S1_at  Top 5 Hits: [ Putative Chalcone synthase 1B OS=Oryza sativa E-value=0; Chalcone and stilbene synthases, N-terminal domain containing protein OS=Oryza sativa subsp. japonica E-value=0; Putative chalcone synthase OS=Oryza sativa E-value=0; Os10g0158400 protein OS=Oryza sativa subsp. japonica E-value=0; Os10g0167900 protein OS=Oryza sativa subsp. japonica E-value=0; ] 
Os10g09860 363  
Chr.  : Chr10
From  : 5351336
To    : 5352769
Strand: -
 OsAffx.6627.1.S1_at  Top 5 Hits: [ Putative chalcone synthase OS=Oryza sativa E-value=0; Os10g0177300 protein OS=Oryza sativa subsp. japonica E-value=0; Putative chalcone synthase OS=Oryza sativa E-value=0; Os10g0158400 protein OS=Oryza sativa subsp. japonica E-value=0; Os10g0167900 protein OS=Oryza sativa subsp. japonica E-value=0; ] 
Os10g34360 389  
Chr.  : Chr10
From  : 18244882
To    : 18247338
Strand: +
 Os.168.1.S1_at  Top 5 Hits: [ Os10g0484800 protein OS=Oryza sativa subsp. japonica E-value=0; Anther-specific protein YY2 OS=Oryza sativa E-value=0; Chalcone synthase-like OS=Oryza sativa E-value=0; Chalcone synthase-like protein OS=Triticum aestivum E-value=0; Chalcone synthase G OS=Zea mays E-value=0; ] 
Os11g32580 413  
Chr.  : Chr11
From  : 18760423
To    : 18762187
Strand: -
 N/A  Top 5 Hits: [ Chalcone and stilbene synthases, N-terminal domain containing protein, expressed OS=Oryza sativa subsp. japonica E-value=0; Chalcone and stilbene synthases, N-terminal domain containing protein OS=Oryza sativa subsp. japonica E-value=0; Chalcone and stilbene synthases, N-terminal domain containing protein OS=Oryza sativa subsp. japonica E-value=0; Os07g0271500 protein OS=Oryza sativa subsp. japonica E-value=4e-96; ] 
Os11g32610 401  
Chr.  : Chr11
From  : 18770112
To    : 18772046
Strand: +
 N/A  Top 5 Hits: [ Chalcone and stilbene synthases, N-terminal domain containing protein OS=Oryza sativa subsp. japonica E-value=0; Chalcone and stilbene synthases, N-terminal domain containing protein, expressed OS=Oryza sativa subsp. japonica E-value=0; Chalcone and stilbene synthases, N-terminal domain containing protein OS=Oryza sativa subsp. japonica E-value=8e-83; Os07g0271500 protein OS=Oryza sativa subsp. japonica E-value=7e-76; Os07g0525500 protein OS=Oryza sativa subsp. japonica E-value=2e-73; ] 
Os11g32620 407  
Chr.  : Chr11
From  : 18776940
To    : 18778528
Strand: -
 N/A  Top 5 Hits: [ Chalcone and stilbene synthases, N-terminal domain containing protein OS=Oryza sativa subsp. japonica E-value=0; Os07g0525900 protein OS=Oryza sativa subsp. japonica E-value=0; Chalcone and stilbene synthases, N-terminal domain containing protein, expressed OS=Oryza sativa subsp. japonica E-value=3e-99; Os07g0271500 protein OS=Oryza sativa subsp. japonica E-value=8e-98; Chalcone and stilbene synthases, N-terminal domain containing protein OS=Oryza sativa subsp. japonica E-value=9e-98; ] 
Os11g32650 398  
Chr.  : Chr11
From  : 18811245
To    : 18814704
Strand: -
 Os.12416.1.S1_at  Top 5 Hits: [ Chalcone synthase OS=Triticum aestivum E-value=0; Chalcone synthase OS=Triticum aestivum E-value=0; Chalcone synthase OS=Thinopyrum ponticum E-value=0; Chalcone synthase OS=Hordeum vulgare E-value=0; Chalcone synthase OS=Zea mays E-value=0; ]  CAA61955.1 Shih et al.,2008
Os11g35930 399  
Chr.  : Chr11
From  : 20636673
To    : 20638465
Strand: +
 Os.51145.1.S1_at  Top 5 Hits: [ Chalcone and stilbene synthases, N-terminal domain containing protein, expressed OS=Oryza sativa subsp. japonica E-value=0; OSJNBa0079M09.15 protein OS=Oryza sativa subsp. japonica E-value=0; OSIGBa0092O07.7 protein OS=Oryza sativa E-value=0; Os04g0103900 protein OS=Oryza sativa subsp. japonica E-value=0; OSIGBa0148I18.6 protein OS=Oryza sativa E-value=0; ] 

Flavonols, anthocyanidins > 2-Oxoglutarate-dependent dioxygenase (2Og)
Seq ID Length Coordinates AffyProbes Description NCBI Protein Literature
Os01g24980 344  
Chr.  : Chr1
From  : 14076603
To    : 14079690
Strand: +
 Os.27188.1.S1_at  Top 5 Hits: [ Os01g0351800 protein OS=Oryza sativa subsp. japonica E-value=0; Os01g0352100 protein OS=Oryza sativa subsp. japonica E-value=0; Naringenin,2-oxoglutarate 3-dioxygenase OS=Zea mays E-value=0; Flavonol synthase/flavanone 3-hydroxylase, putative OS=Ricinus communis E-value=2e-96; SRG1 like protein OS=Arabidopsis thaliana E-value=7e-88; ] 
Os01g25010 350  
Chr.  : Chr1
From  : 14100968
To    : 14107057
Strand: +
 Os.53353.1.S1_at  Top 5 Hits: [ Os01g0352100 protein OS=Oryza sativa subsp. japonica E-value=0; Os01g0351800 protein OS=Oryza sativa subsp. japonica E-value=0; Naringenin,2-oxoglutarate 3-dioxygenase OS=Zea mays E-value=0; Flavonol synthase/flavanone 3-hydroxylase OS=Zea mays E-value=2e-86; Flavonol synthase/flavanone 3-hydroxylase, putative OS=Ricinus communis E-value=1e-84; ] 
Os01g27490 375  
Chr.  : Chr1
From  : 15345323
To    : 15346915
Strand: -
 Os.2688.1.S1_at  Subfamily: ANS; putative; Top 5 Hits: [ Os01g0372500 protein OS=Oryza sativa subsp. japonica E-value=0; Anthocyanidin synthase OS=Oryza sativa E-value=0; Os06g0626700 protein OS=Oryza sativa subsp. japonica E-value=0; Anthocyanidin synthase OS=Triticum aestivum E-value=0; Anthocyanidin synthase OS=Triticum aestivum E-value=0; ] 
Os01g70930 366  
Chr.  : Chr1
From  : 41055973
To    : 41057829
Strand: -
 Os.45927.1.S1_at  Top 5 Hits: [ Os01g0935400 protein OS=Oryza sativa subsp. japonica E-value=0; Flavonol synthase/flavanone 3-hydroxylase OS=Zea mays E-value=0; Flavonol synthase/flavanone 3-hydroxylase, putative OS=Ricinus communis E-value=0; Genomic DNA, chromosome 3, P1 clone:MHC9 OS=Arabidopsis thaliana E-value=0; Ethylene-forming enzyme OS=Picea glauca E-value=6e-76; ] 
Os03g63900 362  
Chr.  : Chr3
From  : 36096439
To    : 36097994
Strand: +
 Os.21024.1.S1_at  Top 5 Hits: [ Os03g0856000 protein OS=Oryza sativa subsp. japonica E-value=0; Flavonol synthase/flavanone 3-hydroxylase, putative OS=Ricinus communis E-value=1e-90; Naringenin,2-oxoglutarate 3-dioxygenase OS=Zea mays E-value=6e-83; Os10g0558200 protein OS=Oryza sativa subsp. japonica E-value=1e-81; ] 
Os04g49194 340  
Chr.  : Chr4
From  : 29146429
To    : 29153131
Strand: +
 Os.17316.1.S1_at  Subfamily: F3betaH; putative; Top 5 Hits: [ Os04g0581000 protein OS=Oryza sativa subsp. japonica E-value=0; Flavanone 3-hydroxylase (Fragment) OS=Triticum aestivum E-value=0; Os03g0122300 protein OS=Oryza sativa subsp. japonica E-value=0; Oxidoreductase, 2OG-Fe oxygenase family protein, expressed OS=Oryza sativa subsp. japonica E-value=0; Gibberellin 20 oxidase 2 OS=Zea mays E-value=0; ] 
Os04g55070 326  
Chr.  : Chr4
From  : 32562078
To    : 32565717
Strand: -
 OsAffx.4179.1.S1_at  Top 5 Hits: [ Os04g0643500 protein OS=Oryza sativa subsp. japonica E-value=0; H0306F03.8 protein OS=Oryza sativa E-value=0; Flavonol synthase/flavanone 3-hydroxylase, putative OS=Ricinus communis E-value=0; Gibberellin 7-oxidase OS=Cucurbita maxima E-value=2e-98; Gibberellin 20 oxidase 2 OS=Zea mays E-value=8e-39; ] 
Os04g56700 377  
Chr.  : Chr4
From  : 33624235
To    : 33627190
Strand: -
 OsAffx.14440.1.S1_at  Subfamily: F3betaH; putative; Top 5 Hits: [ OSJNBa0084K01.10 protein OS=Oryza sativa subsp. japonica E-value=0; Flavanone 3-hydroxylase OS=Triticum aestivum E-value=0; Flavanone 3-hydroxylase OS=Triticum aestivum E-value=0; Flavanone 3-hydroxylase OS=Triticum aestivum E-value=0; Flavanone 3-hydroxylase OS=Triticum aestivum E-value=0; ] 
Os04g57160 326  
Chr.  : Chr4
From  : 33874932
To    : 33878366
Strand: +
 N/A  Top 5 Hits: [ OSJNBa0043A12.1 protein OS=Oryza sativa subsp. japonica E-value=0; H1005F08.24 protein OS=Oryza sativa E-value=0; B0811B10.2 protein OS=Oryza sativa E-value=0; Flavonol synthase/flavanone 3-hydroxylase OS=Zea mays E-value=0; Os04g0667200 protein (Fragment) OS=Oryza sativa subsp. japonica E-value=0; ] 
Os04g57180 333  
Chr.  : Chr4
From  : 33882545
To    : 33885692
Strand: -
 Os.49944.1.S1_at  Top 5 Hits: [ Os04g0667400 protein OS=Oryza sativa subsp. japonica E-value=0; H1005F08.25 protein OS=Oryza sativa E-value=0; B0811B10.4 protein OS=Oryza sativa E-value=0; H1005F08.24 protein OS=Oryza sativa E-value=0; Flavonol synthase/flavanone 3-hydroxylase OS=Zea mays E-value=0; ] 
Os06g06720 352  
Chr.  : Chr6
From  : 3144467
To    : 3146619
Strand: +
 Os.4365.1.S1_at  Top 5 Hits: [ Os06g0162500 protein OS=Oryza sativa subsp. japonica E-value=0; Flavonol synthase/flavanone 3-hydroxylase OS=Zea mays E-value=0; Leucoanthocyanidin dioxygenase, putative OS=Ricinus communis E-value=0; Strong similarity to naringenin 3-dioxygenase OS=Arabidopsis thaliana E-value=0; Naringenin 3-dioxygenase like protein OS=Brassica napus E-value=6e-96; ] 
Os06g42130 373  
Chr.  : Chr6
From  : 25294994
To    : 25296319
Strand: -
 N/A  Subfamily: ANS; putative; Top 5 Hits: [ Os06g0626700 protein OS=Oryza sativa subsp. japonica E-value=0; Anthocyanidin synthase OS=Oryza sativa E-value=0; Os01g0372500 protein OS=Oryza sativa subsp. japonica E-value=0; Anthocyanidin synthase OS=Triticum aestivum E-value=0; Anthocyanidin synthase OS=Triticum aestivum E-value=0; ] 
Os08g37456 337  
Chr.  : Chr8
From  : 23720898
To    : 23724533
Strand: -
 Os.11122.1.S1_at  Subfamily: ANS; putative; Top 5 Hits: [ Os08g0480200 protein OS=Oryza sativa subsp. japonica E-value=0; Flavonol synthase/flavanone 3-hydroxylase, putative OS=Ricinus communis E-value=2e-85; Leucoanthocyanidin dioxygenase, putative OS=Ricinus communis E-value=7e-80; Flavonol synthase/flavanone 3-hydroxylase, putative OS=Ricinus communis E-value=2e-73; ] 
Os09g07020 328  
Chr.  : Chr9
From  : 3403354
To    : 3407176
Strand: -
 Os.11701.1.S1_at  Top 5 Hits: [ Os09g0245500 protein OS=Oryza sativa subsp. japonica E-value=0; Os09g0248900 protein OS=Oryza sativa subsp. japonica E-value=0; Flavonol synthase-like protein OS=Zea mays E-value=0; Flavonol synthase/flavanone 3-hydroxylase, putative OS=Ricinus communis E-value=0; Putative flavonol synthase-like protein OS=Euphorbia esula E-value=0; ] 
Os11g25060 391  
Chr.  : Chr11
From  : 13821458
To    : 13827174
Strand: +
 OsAffx.19001.1.S1_at  Top 5 Hits: [ Oxidoreductase, 2OG-Fe oxygenase family protein OS=Oryza sativa subsp. japonica E-value=0; Naringenin,2-oxoglutarate 3-dioxygenase OS=Zea mays E-value=0; Leucoanthocyanidin dioxygenase, putative; 41415-43854 OS=Arabidopsis thaliana E-value=9e-99; Putative anthocyanidin synthase OS=Arabidopsis thaliana E-value=8e-98; Putative anthocyanidin synthase OS=Arabidopsis thaliana E-value=2e-97; ] 

Flavonols, anthocyanidins > Dihydroflavonol reductase (DFR)
Seq ID Length Coordinates AffyProbes Description NCBI Protein Literature
Os01g44260 284  
Chr.  : Chr1
From  : 25381654
To    : 25383634
Strand: +
 Os.3379.1.S1_at  Top 5 Hits: [ Dihydroflavonol 4-reductase OS=Oryza sativa subsp. japonica E-value=0; Putative dihydrokaempferol 4-reductase OS=Oryza sativa subsp. japonica E-value=0; Dihydroflavonol reductase OS=Oryza sativa E-value=0; Dihydroflavonol-4-reductase OS=Triticum monococcum E-value=0; Dihydroflavonol-4-reductase OS=Triticum aestivum E-value=0; ] 
Os01g45200 363  
Chr.  : Chr1
From  : 25639675
To    : 25646180
Strand: -
 Os.11247.1.S1_at  May belong to DFR,CCR families; Top 5 Hits: [ Os01g0639200 protein OS=Oryza sativa subsp. japonica E-value=0; Os05g0578500 protein OS=Oryza sativa subsp. japonica E-value=0; Dihydroflavonol-4-reductase OS=Zea mays E-value=0; Cinnamoyl CoA reductase-like OS=Oryza sativa subsp. japonica E-value=0; Cinnamoyl-CoA reductase, putative OS=Ricinus communis E-value=5e-89; ] 
Os02g08420 344  
Chr.  : Chr2
From  : 4497074
To    : 4500446
Strand: +
 Os.12948.1.S1_at  May belong to CCR,DFR families; Top 5 Hits: [ Os02g0180700 protein OS=Oryza sativa subsp. japonica E-value=0; Dihydroflavonol-4-reductase OS=Zea mays E-value=0; Cinnamoyl-CoA reductase OS=Triticum aestivum E-value=0; Cinnamoyl-CoA reductase OS=Zea mays E-value=0; Cinnamoyl-CoA reductase OS=Zea mays E-value=0; ] 
Os03g08624 341  
Chr.  : Chr3
From  : 4440958
To    : 4442836
Strand: +
 N/A  Top 5 Hits: [ Putative dihydroflavonal-4-reductase OS=Oryza sativa E-value=0; Os03g0184550 protein OS=Oryza sativa subsp. japonica E-value=0; Dihydroflavonol-4-reductase OS=Zea mays E-value=0; Dihydroflavonal-4-reductase, putative OS=Ricinus communis E-value=0; Uncharacterized protein At4g33360.2 OS=Arabidopsis thaliana E-value=3e-98; ] 
Os03g60380 334  
Chr.  : Chr3
From  : 34333157
To    : 34336630
Strand: +
 Os.9436.1.S1_at  May belong to DFR,CCR families; Top 5 Hits: [ Os03g0818200 protein OS=Oryza sativa subsp. japonica E-value=0; Dihydroflavonol-4-reductase OS=Zea mays E-value=0; Cinnamoyl-CoA reductase, putative OS=Ricinus communis E-value=0; Dihydroflavonol-4-reductase OS=Zea mays E-value=0; Dihydroflavonol 4-reductase-like OS=Arabidopsis thaliana E-value=0; ] 
Os05g50250 379  
Chr.  : Chr5
From  : 28732821
To    : 28738593
Strand: +
 Os.51338.1.S1_at  May belong to DFR,CCR families; Top 5 Hits: [ Os05g0578500 protein OS=Oryza sativa subsp. japonica E-value=0; Dihydroflavonol-4-reductase OS=Zea mays E-value=0; Os01g0639200 protein OS=Oryza sativa subsp. japonica E-value=0; Cinnamoyl CoA reductase-like OS=Oryza sativa subsp. japonica E-value=1e-94; Cinnamoyl-CoA reductase, putative OS=Ricinus communis E-value=2e-83; ] 
Os06g41810 321  
Chr.  : Chr6
From  : 25072545
To    : 25075552
Strand: -
 Os.15971.1.S1_at  May belong to DFR,CCR families; Top 5 Hits: [ Os06g0623300 protein OS=Oryza sativa subsp. japonica E-value=0; Dihydroflavonol-4-reductase OS=Zea mays E-value=0; Dihydroflavonol-4-reductase OS=Zea mays E-value=0; Os06g0623600 protein OS=Oryza sativa subsp. japonica E-value=8e-95; Cinnamoyl-CoA reductase, putative OS=Ricinus communis E-value=1e-90; ] 
Os06g46920 367  
Chr.  : Chr6
From  : 28469176
To    : 28471155
Strand: -
 N/A  May belong to CCR,DFR families; Top 5 Hits: [ Os06g0683100 protein OS=Oryza sativa subsp. japonica E-value=0; Dihydroflavonol-4-reductase OS=Zea mays E-value=0; Cinnamoyl-CoA reductase, putative OS=Ricinus communis E-value=7e-88; Dihydroflavonol-4-reductase DFR1 OS=Glycine max E-value=2e-59; Dihydroflavonol 4-reductase OS=Gossypium hirsutum E-value=1e-58; ] 
Os08g34280 361  
Chr.  : Chr8
From  : 21503706
To    : 21510943
Strand: -
 Os.8544.1.S1_at  May belong to CCR,DFR families; Top 5 Hits: [ Os08g0441500 protein OS=Oryza sativa subsp. japonica E-value=0; Cinnamoyl-CoA reductase OS=Saccharum officinarum E-value=0; Cinnamoyl-CoA reductase OS=Lolium perenne E-value=0; Dihydroflavonol-4-reductase OS=Zea mays E-value=0; Cinnamoyl CoA reductase OS=Zea mays E-value=0; ] 
Os08g40440 295  
Chr.  : Chr8
From  : 25588370
To    : 25590329
Strand: -
 OsAffx.17435.1.S1_s_at  Top 5 Hits: [ Putative dihydroflavonol reductase OS=Oryza sativa subsp. japonica E-value=0; Dihydroflavonol-4-reductase OS=Zea mays E-value=0; Dihydroflavonol-4-reductase OS=Zea mays E-value=0; Dihydro-flavanoid reductase-like protein OS=Zea mays E-value=0; Putative dihydroflavonol reductase OS=Oryza sativa E-value=0; ] 
Os09g31490 343  
Chr.  : Chr9
From  : 18993539
To    : 18997420
Strand: -
 Os.15746.1.S1_at  May belong to CCR,DFR families; Top 5 Hits: [ Os09g0491788 protein OS=Oryza sativa subsp. japonica E-value=0; Os09g0491852 protein OS=Oryza sativa subsp. japonica E-value=0; Dihydroflavonol-4-reductase OS=Zea mays E-value=0; Os09g0491820 protein OS=Oryza sativa subsp. japonica E-value=0; Putative cinnamoyl-CoA reductase OS=Arabidopsis thaliana E-value=1e-90; ] 
Os09g31502 348  
Chr.  : Chr9
From  : 19010574
To    : 19013398
Strand: -
 Os.51220.1.S1_at  May belong to CCR,DFR families; Top 5 Hits: [ Os09g0491820 protein OS=Oryza sativa subsp. japonica E-value=0; Dihydroflavonol-4-reductase OS=Zea mays E-value=0; Os09g0491852 protein OS=Oryza sativa subsp. japonica E-value=0; Os09g0491788 protein OS=Oryza sativa subsp. japonica E-value=0; Cinnamoyl-CoA reductase, putative OS=Ricinus communis E-value=1e-89; ] 
Os10g42620 319  
Chr.  : Chr10
From  : 22910074
To    : 22914797
Strand: +
 Os.9496.1.S1_at  May belong to DFR,CCR families; Top 5 Hits: [ Os10g0576900 protein OS=Oryza sativa subsp. japonica E-value=0; Putative cinnamoyl-CoA reductase OS=Oryza sativa E-value=0; Dihydroflavonol-4-reductase OS=Zea mays E-value=0; Dihydroflavonol-4-reductase OS=Zea mays E-value=0; Cinnamoyl-CoA reductase, putative OS=Ricinus communis E-value=7e-69; ] 

Flavonols, anthocyanidins > Flavonoid 3',5'-hydroxylase (F3'5'H)
Seq ID Length Coordinates AffyProbes Description NCBI Protein Literature
Os03g25150 519  
Chr.  : Chr3
From  : 14379987
To    : 14386500
Strand: +
 OsAffx.13016.1.S1_at  Top 5 Hits: [ Flavonoid 3',5'-hydroxylase OS=Gossypium hirsutum E-value=0; Flavonoid 3'5'-hydroxylase OS=Gossypium hirsutum E-value=0; Flavonoid 3',5'-hydroxylase OS=Cyclamen persicum E-value=0; Cytochrome P450 flavonoid 3',5'-hydroxylase OS=Populus trichocarpa E-value=0; Flavonoid 3',5'-hydroxylase OS=Populus trichocarpa E-value=0; ] 

Flavonols, anthocyanidins > Flavonoid 3'-hydroxylase (F3'H)
Seq ID Length Coordinates AffyProbes Description NCBI Protein Literature
Os10g16974 535  
Chr.  : Chr10
From  : 8423110
To    : 8433191
Strand: +
 Os.6011.1.S1_at  Top 5 Hits: [ Os10g0317900 protein OS=Oryza sativa subsp. japonica E-value=0; Flavonoid 3-monooxygenase OS=Zea mays E-value=0; Putative flavonoid 3'-hydroxylase OS=Oryza sativa E-value=0; Os10g0320100 protein OS=Oryza sativa subsp. japonica E-value=0; Flavonoid 3'-hydroxylase OS=Sorghum bicolor E-value=0; ] 
Os10g17260 526  
Chr.  : Chr10
From  : 8608172
To    : 8610146
Strand: +
 Os.46551.1.S1_at  Top 5 Hits: [ Putative flavonoid 3'-hydroxylase OS=Oryza sativa E-value=0; Os10g0320100 protein OS=Oryza sativa subsp. japonica E-value=0; Flavonoid 3'-hydroxylase OS=Sorghum bicolor E-value=0; Flavonoid 3'-hydroxylase OS=Sorghum bicolor E-value=0; Flavonoid 3'-hydroxylase OS=Sorghum bicolor E-value=0; ]  Q7G602 Shih et al.,2008

Isoflavonoid > Isoflavone reductase (IFR)
Seq ID Length Coordinates AffyProbes Description NCBI Protein Literature
Os01g01650 318  
Chr.  : Chr1
From  : 321556
To    : 322948
Strand: -
 Os.32454.1.S1_at  putative; Top 5 Hits: [ Os01g0106300 protein OS=Oryza sativa subsp. japonica E-value=0; Os01g0106400 protein OS=Oryza sativa subsp. japonica E-value=0; Isoflavone reductase-like protein OS=Oryza sativa E-value=0; Isoflavone reductase IRL OS=Zea mays E-value=0; Isoflavone reductase-like protein 6 OS=Vitis vinifera E-value=1e-92; ] 
Os01g01660 314  
Chr.  : Chr1
From  : 326128
To    : 327451
Strand: -
 Os.1000.1.S1_at  putative; Top 5 Hits: [ Os01g0106400 protein OS=Oryza sativa subsp. japonica E-value=0; Isoflavone reductase-like protein OS=Oryza sativa E-value=0; Os01g0106300 protein OS=Oryza sativa subsp. japonica E-value=0; Isoflavone reductase IRL OS=Zea mays E-value=0; Phenylcoumaran benzylic ether reductase-like protein OS=Linum strictum subsp. corymbulosum E-value=5e-97; ] 
Os02g47610 306  
Chr.  : Chr2
From  : 29089100
To    : 29091582
Strand: -
 Os.8713.1.S1_at  putative; Top 5 Hits: [ Os02g0705000 protein OS=Oryza sativa subsp. japonica E-value=0; Isoflavone reductase OS=Zea mays E-value=0; Isoflavone reductase, putative OS=Ricinus communis E-value=0; Isoflavone reductase-like protein OS=Arabidopsis thaliana E-value=0; Phenylcoumaran benzylic ether reductase-like protein OS=Populus trichocarpa E-value=0; ] 
Os06g27770 312  
Chr.  : Chr6
From  : 15723699
To    : 15726774
Strand: +
 Os.15988.1.S1_at  putative; Top 5 Hits: [ Os06g0472200 protein OS=Oryza sativa subsp. japonica E-value=0; Isoflavone reductase OS=Hordeum vulgare E-value=0; Isoflavone reductase-like protein 5 OS=Vitis vinifera E-value=0; Isoflavone reductase-like protein 6 OS=Vitis vinifera E-value=0; Isoflavone reductase related protein OS=Pyrus communis E-value=0; ] 
Os12g16220 314  
Chr.  : Chr12
From  : 9275595
To    : 9280952
Strand: -
 N/A  putative; Top 5 Hits: [ cDNA, clone: J065219F05, full insert sequence OS=Oryza sativa subsp. japonica E-value=0; Isoflavone reductase, putative, expressed OS=Oryza sativa subsp. japonica E-value=0; Os12g0265100 protein OS=Oryza sativa subsp. japonica E-value=0; Isoflavone reductase-like protein 1 OS=Vitis vinifera E-value=0; NAD dependent epimerase/dehydratase, putative OS=Ricinus communis E-value=0; ] 
Os12g16410 314  
Chr.  : Chr12
From  : 9394443
To    : 9397820
Strand: -
 Os.8199.1.S1_at  putative; Top 5 Hits: [ Os12g0265100 protein OS=Oryza sativa subsp. japonica E-value=0; cDNA, clone: J065219F05, full insert sequence OS=Oryza sativa subsp. japonica E-value=0; Isoflavone reductase, putative, expressed OS=Oryza sativa subsp. japonica E-value=0; Isoflavone reductase-like protein 1 OS=Vitis vinifera E-value=0; Pinoresinol-lariciresinol reductase homolog OS=Lotus japonicus E-value=0; ] 

Lignin > 4-Coumaroyl shikimate 3-hydroxylase (C3H)
Seq ID Length Coordinates AffyProbes Description NCBI Protein Literature
gi|115464645 512  
N/A
 N/A  Top 5 Hits: [ Os05g0494000 ] 
gi|125531369 513  
N/A
 N/A  Top 5 Hits: [ hypothetical protein OsI_32975 ] 
gi|52353472 473  
N/A
 N/A  Top 5 Hits: [ putative cytochrome P450 ] 
gi|218184248 315  
N/A
 N/A  Top 5 Hits: [ hypothetical protein OsI_32973 ] 
gi|115478236 519  
N/A
 N/A  Top 5 Hits: [ Os09g0264400 ] 
gi|115479381 525  
N/A
 N/A  Top 5 Hits: [ Os09g0441100 ] 
gi|125561773 520  
N/A
 N/A  Top 5 Hits: [ hypothetical protein OsI_29466 ] 
gi|115476736 608  
N/A
 N/A  Top 5 Hits: [ Os08g0456200 ] 
gi|42409143 520  
N/A
 N/A  Top 5 Hits: [ putative elicitor-inducible cytochrome P450 ] 
gi|125563881 522  
N/A
 N/A  Top 5 Hits: [ hypothetical protein OsI_31534 ] 
gi|51091420 522  
N/A
 N/A  Top 5 Hits: [ putative elicitor-inducible cytochrome P450 ] 
gi|125563879 514  
N/A
 N/A  Top 5 Hits: [ hypothetical protein OsI_31532 ] 
gi|115479383 514  
N/A
 N/A  Top 5 Hits: [ Os09g0441400 ] 
gi|125563880 518  
N/A
 N/A  Top 5 Hits: [ hypothetical protein OsI_31533 ] 
gi|51091419 518  
N/A
 N/A  Top 5 Hits: [ putative elicitor-inducible cytochrome P450 ] 

Lignin > Cinnamyl alcohol dehydrogenase (CAD)
Seq ID Length Coordinates AffyProbes Description NCBI Protein Literature
LOC_Os01g34480.1 336  
Chr.  : Chr1
From  : 19008663
To    : 19013140
Strand: +
 N/A  May belong to CAD,CCR,DFR families; Top 5 Hits: [ Os01g0528800 protein OS=Oryza sativa subsp. japonica E-value=0; Dihydroflavonol-4-reductase OS=Zea mays E-value=0; Cinnamyl alcohol dehydrogenase OS=Elaeis guineensis var. tenera E-value=0; Cinnamoyl CoA reductase-like protein OS=Populus trichocarpa E-value=0; Cinnamoyl CoA reductase-like protein OS=Populus trichocarpa E-value=0; ] 
LOC_Os02g09490.1 363  
Chr.  : Chr2
From  : 4870139
To    : 4874079
Strand: -
 N/A  Top 5 Hits: [ Cinnamyl alcohol dehydrogenase 1a OS=Festuca arundinacea E-value=0; Cinnamyl alcohol dehydrogenase 2a OS=Festuca arundinacea E-value=0; Cinnamyl alcohol dehydrogenase 1b OS=Festuca arundinacea E-value=0; Cinnamyl alcohol dehydrogenase 2b OS=Festuca arundinacea E-value=0; Cinnamyl alcohol dehydrogenase 2 OS=Sorghum bicolor E-value=0; ] 
LOC_Os03g11770.1 336  
Chr.  : Chr3
From  : 6158948
To    : 6162869
Strand: +
 N/A  Top 5 Hits: [ Os03g0216900 protein OS=Oryza sativa subsp. japonica E-value=0; Cinnamyl alcohol dehydrogenase, putative; 82967-79323 OS=Arabidopsis thaliana E-value=6e-15; ] 
LOC_Os03g12270.1 362  
Chr.  : Chr3
From  : 6452082
To    : 6454593
Strand: +
 N/A  Top 5 Hits: [ Os03g0223200 protein OS=Oryza sativa subsp. japonica E-value=0; Cinnamyl alcohol dehydrogenase OS=Cucumis sativus E-value=0; Cinnamyl alcohol dehydrogenase-like protein OS=Populus trichocarpa E-value=0; Cinnamyl alcohol dehydrogenase-like protein OS=Populus trichocarpa E-value=0; Cinnamyl alcohol dehydrogenase-like protein OS=Populus trichocarpa E-value=0; ] 
LOC_Os04g15920.1 360  
Chr.  : Chr4
From  : 8632316
To    : 8634620
Strand: -
 Os.6089.1.S1_at  Top 5 Hits: [ H0209A05.10 protein OS=Oryza sativa E-value=0; Mannitol dehydrogenase OS=Zea mays E-value=0; Alcohol dehydrogenase, putative OS=Ricinus communis E-value=0; Cinnamyl alcohol dehydrogenase-like protein OS=Populus trichocarpa E-value=0; Putative cinnamyl alcohol dehydrogenase OS=Camellia sinensis E-value=0; ] 
LOC_Os04g52280.1 379  
Chr.  : Chr4
From  : 30884431
To    : 30890487
Strand: +
 Os.32904.1.S1_at; Os.4898.1.S1_at  Top 5 Hits: [ Mannitol dehydrogenase OS=Zea mays E-value=0; Cinnamyl alcohol dehydrogenase OS=Lolium perenne E-value=0; Mannitol dehydrogenase OS=Zea mays E-value=0; Cinnamyl alcohol dehydrogenase OS=Cucumis sativus E-value=0; Alcohol dehydrogenase, putative OS=Ricinus communis E-value=0; ] 
LOC_Os08g16910.1 332  
Chr.  : Chr8
From  : 10354408
To    : 10357379
Strand: -
 N/A  Top 5 Hits: [ Os08g0270466 protein OS=Oryza sativa subsp. japonica E-value=0; Cinnamyl alcohol dehydrogenase OS=Lolium perenne E-value=0; Mannitol dehydrogenase OS=Zea mays E-value=0; Mannitol dehydrogenase OS=Zea mays E-value=0; Sinapyl alcohol dehydrogenase-like protein OS=Populus tremula x Populus tremuloides E-value=0; ] 
LOC_Os09g23530.1 359  
Chr.  : Chr9
From  : 13981962
To    : 13983700
Strand: -
 N/A  Top 5 Hits: [ Cinnamyl alcohol dehydrogenase OS=Lolium perenne E-value=0; Cinnamyl alcohol dehydrogenase-like protein OS=Populus trichocarpa E-value=5e-92; Cinnamyl alcohol dehydrogenase (Fragment) OS=Phleum pratense E-value=5e-92; Cinnamyl alcohol dehydrogenase OS=Cucumis sativus E-value=1e-91; Sinapyl alcohol dehydrogenase-like protein OS=Populus tremula x Populus tremuloides E-value=3e-91; ] 
LOC_Os09g23540.1 436  
Chr.  : Chr9
From  : 13985803
To    : 13987783
Strand: -
 N/A  Top 5 Hits: [ Cinnamyl alcohol dehydrogenase OS=Lolium perenne E-value=0; Cinnamyl alcohol dehydrogenase-like protein OS=Populus trichocarpa E-value=0; Cinnamyl alcohol dehydrogenase-like protein OS=Populus trichocarpa E-value=0; Cinnamyl alcohol dehydrogenase-like protein OS=Populus trichocarpa E-value=0; Cinnamyl alcohol dehydrogenase-like protein OS=Populus trichocarpa E-value=0; ] 
LOC_Os09g23550.1 439  
Chr.  : Chr9
From  : 13993540
To    : 13995755
Strand: +
 N/A  Top 5 Hits: [ Cinnamyl alcohol dehydrogenase OS=Lolium perenne E-value=0; Cinnamyl alcohol dehydrogenase-like protein OS=Populus trichocarpa E-value=0; Cinnamyl alcohol dehydrogenase-like protein OS=Populus trichocarpa E-value=0; Cinnamyl alcohol dehydrogenase-like protein OS=Populus trichocarpa E-value=0; Cinnamyl alcohol dehydrogenase-like protein OS=Populus trichocarpa E-value=0; ] 
LOC_Os09g23560.1 362  
Chr.  : Chr9
From  : 14000191
To    : 14002181
Strand: +
 N/A  Top 5 Hits: [ Cinnamyl alcohol dehydrogenase OS=Lolium perenne E-value=0; Cinnamyl alcohol dehydrogenase (Fragment) OS=Phleum pratense E-value=7e-93; Sinapyl alcohol dehydrogenase-like protein OS=Populus tremula x Populus tremuloides E-value=3e-91; Cinnamyl alcohol dehydrogenase OS=Populus trichocarpa E-value=4e-91; Sinapyl alcohol dehydrogenase OS=Populus trichocarpa E-value=5e-91; ] 
LOC_Os10g11810.1 354  
Chr.  : Chr10
From  : 6556409
To    : 6559864
Strand: +
 Os.7543.1.S1_at  Top 5 Hits: [ Mannitol dehydrogenase OS=Zea mays E-value=0; Mannitol dehydrogenase OS=Zea mays E-value=0; Cinnamyl alcohol dehydrogenase OS=Elaeis guineensis var. tenera E-value=0; Alcohol dehydrogenase, putative OS=Ricinus communis E-value=0; Cinnamyl alcohol dehydrogenase-like protein OS=Populus trichocarpa E-value=0; ] 
LOC_Os10g29470.1 366  
Chr.  : Chr10
From  : 15232669
To    : 15238070
Strand: -
 Os.7496.1.S1_a_at  Top 5 Hits: [ Cinnamyl alcohol dehydrogenase OS=Lolium perenne E-value=0; Mannitol dehydrogenase OS=Zea mays E-value=0; Mannitol dehydrogenase OS=Zea mays E-value=0; Sinapyl alcohol dehydrogenase-like protein OS=Populus tremula x Populus tremuloides E-value=0; Cinnamyl alcohol dehydrogenase OS=Populus trichocarpa E-value=0; ] 
LOC_Os11g40690.1 343  
Chr.  : Chr11
From  : 23836388
To    : 23841705
Strand: +
 N/A  Top 5 Hits: [ Mannitol dehydrogenase OS=Zea mays E-value=0; Mannitol dehydrogenase OS=Zea mays E-value=0; Cinnamyl alcohol dehydrogenase OS=Elaeis guineensis var. tenera E-value=0; Alcohol dehydrogenase, putative OS=Ricinus communis E-value=0; Cinnamyl alcohol dehydrogenase-like protein OS=Populus trichocarpa E-value=0; ] 

Lignin > Caffeoyl Coenzyme A 3-O-methyl-transferase (CCOMT)
Seq ID Length Coordinates AffyProbes Description NCBI Protein Literature
LOC_Os06g06980.1 260  
Chr.  : Chr6
From  : 3313112
To    : 3314453
Strand: +
 Os.4198.1.S1_at; Os.4198.1.S1_x_at  Top 5 Hits: [ Os06g0165800 protein OS=Oryza sativa subsp. japonica E-value=0; Caffeoyl-CoA O-methyltransferase OS=Bambusa oldhamii E-value=0; Caffeoyl CoA 3-O-methyltransferase OS=Zea mays E-value=0; Caffeoyl CoA 3-O-methyltransferase OS=Zea mays E-value=0; Caffeoyl CoA 3-O-methyltransferase OS=Zea mays E-value=0; ] 
LOC_Os08g05790.1 317  
Chr.  : Chr8
From  : 3100982
To    : 3104450
Strand: +
 N/A  Top 5 Hits: [ Os08g0154000 protein OS=Oryza sativa subsp. japonica E-value=0; Caffeoyl-CoA O-methyltransferase 1 OS=Zea mays E-value=4e-95; O-methyltransferase, putative OS=Ricinus communis E-value=5e-77; Trans-caffeoyl-coa 3-o-methyltransferase-like protein OS=Populus trichocarpa E-value=9e-69; O-methyltransferase OS=Anabaena sp. (strain PCC 7120) E-value=1e-51; ] 
LOC_Os08g38900.1 252  
Chr.  : Chr8
From  : 24583789
To    : 24585357
Strand: -
 N/A  Top 5 Hits: [ Os08g0498100 protein OS=Oryza sativa subsp. japonica E-value=0; Caffeoyl-CoA O-methyltransferase 1 OS=Zea mays E-value=5e-90; Caffeoyl-CoA O-methyltransferase 1 OS=Zea mays E-value=1e-85; Caffeoyl-CoA-O-methyltransferase OS=Acacia auriculiformis x Acacia mangium E-value=1e-64; Caffeoyl-CoA O-methyltransferase (Fragment) OS=Populus tomentosa E-value=5e-64; ] 
LOC_Os08g38910.1 292  
Chr.  : Chr8
From  : 24590231
To    : 24594839
Strand: -
 Os.7348.1.S1_a_at; Os.7348.1.S1_at; Os.7348.2.S1_x_at  Top 5 Hits: [ Os08g0498400 protein OS=Oryza sativa subsp. japonica E-value=0; cDNA clone:J013030H15, full insert sequence OS=Oryza sativa subsp. japonica E-value=1e-91; Putative caffeoyl CoA O-methyltransferase (Fragment) OS=Triticum aestivum E-value=4e-88; Caffeoyl CoA 3-O-methyltransferase OS=Zea mays E-value=1e-67; Caffeoyl CoA 3-O-methyltransferase OS=Zea mays E-value=2e-67; ] 
LOC_Os08g38920.1 234  
Chr.  : Chr8
From  : 24595192
To    : 24596231
Strand: -
 N/A  Top 5 Hits: [ Os08g0498600 protein OS=Oryza sativa subsp. japonica E-value=0; Putative caffeoyl-CoA O-methyltransferase (Fragment) OS=Brachypodium sylvaticum E-value=2e-82; Caffeoyl CoA 3-O-methyltransferase OS=Zea mays E-value=1e-64; Os06g0165800 protein OS=Oryza sativa subsp. japonica E-value=1e-64; Caffeoyl CoA 3-O-methyltransferase OS=Zea mays E-value=2e-64; ] 
LOC_Os09g30360.1 258  
Chr.  : Chr9
From  : 18473986
To    : 18475380
Strand: -
 Os.4830.1.S1_at; Os.4830.1.S1_x_at  Top 5 Hits: [ Os09g0481400 protein OS=Oryza sativa subsp. japonica E-value=0; Putative caffeoyl-CoA O-methyltransferase OS=Brachypodium sylvaticum E-value=0; Caffeoyl-CoA O-methyltransferase 1 OS=Zea mays E-value=0; Putative caffeoyl-CoA O-methyltransferase OS=Triticum aestivum E-value=0; Os06g0165800 protein OS=Oryza sativa subsp. japonica E-value=8e-75; ] 

Lignin > Cinnamoyl Coenzyme A reductase (CCR)
Seq ID Length Coordinates AffyProbes Description NCBI Protein Literature
LOC_Os01g03670.1 337  
Chr.  : Chr1
From  : 1512136
To    : 1513467
Strand: +
 Os.20305.1.S1_at  May belong to DFR,CCR families; Top 5 Hits: [ Os01g0127500 protein OS=Oryza sativa subsp. japonica E-value=0; Cinnamoyl-CoA reductase OS=Jatropha curcas E-value=0; Cinnamoyl-CoA reductase, putative OS=Ricinus communis E-value=0; Putative reductase; 61412-62628 OS=Arabidopsis thaliana E-value=1e-98; Dihydroflavonol 4-reductase, putative OS=Arabidopsis thaliana E-value=1e-86; ] 
LOC_Os01g18110.1 326  
Chr.  : Chr1
From  : 10143268
To    : 10145288
Strand: +
 N/A  Top 5 Hits: [ Os01g0283600 protein OS=Oryza sativa subsp. japonica E-value=0; Putative cinnamoyl-CoA reductase OS=Oryza sativa subsp. japonica E-value=0; Os01g0283700 protein OS=Oryza sativa subsp. japonica E-value=0; Os02g0808800 protein OS=Oryza sativa subsp. japonica E-value=0; Cinnamoyl CoA reductase OS=Oryza sativa E-value=0; ] 
LOC_Os01g18120.1 328  
Chr.  : Chr1
From  : 10147753
To    : 10151496
Strand: +
 Os.20420.1.S1_at  Top 5 Hits: [ Os01g0283700 protein OS=Oryza sativa subsp. japonica E-value=0; Os01g0283600 protein OS=Oryza sativa subsp. japonica E-value=0; Putative cinnamoyl-CoA reductase OS=Oryza sativa subsp. japonica E-value=0; Os02g0808800 protein OS=Oryza sativa subsp. japonica E-value=0; Cinnamoyl CoA reductase OS=Oryza sativa E-value=0; ] 
LOC_Os01g34480.1 336  
Chr.  : Chr1
From  : 19008663
To    : 19013140
Strand: +
 N/A  May belong to CAD,CCR,DFR families; Top 5 Hits: [ Os01g0528800 protein OS=Oryza sativa subsp. japonica E-value=0; Dihydroflavonol-4-reductase OS=Zea mays E-value=0; Cinnamyl alcohol dehydrogenase OS=Elaeis guineensis var. tenera E-value=0; Cinnamoyl CoA reductase-like protein OS=Populus trichocarpa E-value=0; Cinnamoyl CoA reductase-like protein OS=Populus trichocarpa E-value=0; ] 
LOC_Os01g45200.1 363  
Chr.  : Chr1
From  : 25639675
To    : 25646180
Strand: -
 Os.11247.1.S1_at  May belong to DFR,CCR families; Top 5 Hits: [ Os01g0639200 protein OS=Oryza sativa subsp. japonica E-value=0; Os05g0578500 protein OS=Oryza sativa subsp. japonica E-value=0; Dihydroflavonol-4-reductase OS=Zea mays E-value=0; Cinnamoyl CoA reductase-like OS=Oryza sativa subsp. japonica E-value=0; Cinnamoyl-CoA reductase, putative OS=Ricinus communis E-value=5e-89; ] 
LOC_Os01g61230.1 326  
Chr.  : Chr1
From  : 35429813
To    : 35431842
Strand: +
 Os.42521.1.S1_at  Top 5 Hits: [ Putative cinnamoyl-CoA reductase OS=Oryza sativa subsp. japonica E-value=0; Cinnamoyl-CoA reductase OS=Camellia oleifera E-value=0; Putative cinnamoyl-CoA reductase-like protein OS=Solanum tuberosum E-value=6e-99; Cinnamoyl-CoA reductase, putative OS=Ricinus communis E-value=3e-98; NmrA-like family protein OS=Solanum demissum E-value=4e-98; ]  BAB68104.1 Kawasaki et al.,2006
LOC_Os01g74660.1 327  
Chr.  : Chr1
From  : 43243142
To    : 43244388
Strand: +
 N/A  Top 5 Hits: [ Os01g0978400 protein OS=Oryza sativa subsp. japonica E-value=0; Putative cinnamoyl-CoA reductase OS=Arabidopsis thaliana E-value=3e-69; Cinnamoyl-CoA reductase, putative OS=Ricinus communis E-value=1e-68; Os03g0818200 protein OS=Oryza sativa subsp. japonica E-value=1e-49; Cinnamoyl-CoA reductase, putative OS=Ricinus communis E-value=1e-49; ] 
LOC_Os02g08420.1 344  
Chr.  : Chr2
From  : 4497074
To    : 4500446
Strand: +
 N/A  May belong to CCR,DFR families; Top 5 Hits: [ Os02g0180700 protein OS=Oryza sativa subsp. japonica E-value=0; Dihydroflavonol-4-reductase OS=Zea mays E-value=0; Cinnamoyl-CoA reductase OS=Triticum aestivum E-value=0; Cinnamoyl-CoA reductase OS=Zea mays E-value=0; Cinnamoyl-CoA reductase OS=Zea mays E-value=0; ] 
LOC_Os02g56460.1 338  
Chr.  : Chr2
From  : 34558406
To    : 34560253
Strand: -
 Os.6757.1.S1_at  Top 5 Hits: [ Os02g0808800 protein OS=Oryza sativa subsp. japonica E-value=0; Cinnamoyl CoA reductase OS=Oryza sativa E-value=0; Os02g0811400 protein OS=Oryza sativa subsp. japonica E-value=0; Os02g0811800 protein OS=Oryza sativa subsp. japonica E-value=0; Os02g0812000 protein OS=Oryza sativa subsp. japonica E-value=0; ] 
LOC_Os02g56680.1 337  
Chr.  : Chr2
From  : 34736625
To    : 34738413
Strand: +
 N/A  Top 5 Hits: [ Cinnamoyl CoA reductase OS=Oryza sativa E-value=0; Os02g0811400 protein OS=Oryza sativa subsp. japonica E-value=0; Os02g0808800 protein OS=Oryza sativa subsp. japonica E-value=0; Os02g0811800 protein OS=Oryza sativa subsp. japonica E-value=0; Os02g0812000 protein OS=Oryza sativa subsp. japonica E-value=0; ] 
LOC_Os02g56690.1 354  
Chr.  : Chr2
From  : 34751789
To    : 34753269
Strand: +
 N/A  Top 5 Hits: [ Os02g0811600 protein OS=Oryza sativa subsp. japonica E-value=0; Os02g0811800 protein OS=Oryza sativa subsp. japonica E-value=0; Os02g0808800 protein OS=Oryza sativa subsp. japonica E-value=0; Cinnamoyl CoA reductase OS=Oryza sativa E-value=0; Os02g0811400 protein OS=Oryza sativa subsp. japonica E-value=0; ] 
LOC_Os02g56700.1 339  
Chr.  : Chr2
From  : 34758300
To    : 34760774
Strand: +
 Os.20154.1.S1_at  Top 5 Hits: [ Os02g0811800 protein OS=Oryza sativa subsp. japonica E-value=0; Cinnamoyl CoA reductase OS=Oryza sativa E-value=0; Os02g0811400 protein OS=Oryza sativa subsp. japonica E-value=0; Os02g0808800 protein OS=Oryza sativa subsp. japonica E-value=0; Os02g0811600 protein OS=Oryza sativa subsp. japonica E-value=0; ] 
LOC_Os02g56720.2 334  
Chr.  : Chr2
From  : 34763775
To    : 34765320
Strand: +
 Os.55206.1.A1_at  Top 5 Hits: [ Os02g0812000 protein OS=Oryza sativa subsp. japonica E-value=0; Putative cinnamoyl CoA reductase OS=Oryza sativa subsp. japonica E-value=0; Cinnamoyl CoA reductase OS=Oryza sativa E-value=0; Os02g0811400 protein OS=Oryza sativa subsp. japonica E-value=0; Os02g0808800 protein OS=Oryza sativa subsp. japonica E-value=0; ] 
LOC_Os03g60380.1 334  
Chr.  : Chr3
From  : 34333157
To    : 34336630
Strand: +
 Os.24712.1.A1_s_at; Os.9436.1.S1_at; OsAffx.25781.1.S1_at  May belong to DFR,CCR families; Top 5 Hits: [ Os03g0818200 protein OS=Oryza sativa subsp. japonica E-value=0; Dihydroflavonol-4-reductase OS=Zea mays E-value=0; Cinnamoyl-CoA reductase, putative OS=Ricinus communis E-value=0; Dihydroflavonol-4-reductase OS=Zea mays E-value=0; Dihydroflavonol 4-reductase-like OS=Arabidopsis thaliana E-value=0; ] 
LOC_Os05g50250.1 379  
Chr.  : Chr5
From  : 28732821
To    : 28738593
Strand: +
 N/A  May belong to DFR,CCR families; Top 5 Hits: [ Os05g0578500 protein OS=Oryza sativa subsp. japonica E-value=0; Dihydroflavonol-4-reductase OS=Zea mays E-value=0; Os01g0639200 protein OS=Oryza sativa subsp. japonica E-value=0; Cinnamoyl CoA reductase-like OS=Oryza sativa subsp. japonica E-value=1e-94; Cinnamoyl-CoA reductase, putative OS=Ricinus communis E-value=2e-83; ] 
LOC_Os06g41810.1 321  
Chr.  : Chr6
From  : 25072545
To    : 25075552
Strand: -
 N/A  May belong to DFR,CCR families; Top 5 Hits: [ Os06g0623300 protein OS=Oryza sativa subsp. japonica E-value=0; Dihydroflavonol-4-reductase OS=Zea mays E-value=0; Dihydroflavonol-4-reductase OS=Zea mays E-value=0; Os06g0623600 protein OS=Oryza sativa subsp. japonica E-value=8e-95; Cinnamoyl-CoA reductase, putative OS=Ricinus communis E-value=1e-90; ] 
LOC_Os06g41840.1 321  
Chr.  : Chr6
From  : 25085978
To    : 25089188
Strand: -
 Os.6207.1.S1_s_at  May belong to DFR,CCR families; Top 5 Hits: [ Os06g0623600 protein OS=Oryza sativa subsp. japonica E-value=0; Os06g0623300 protein OS=Oryza sativa subsp. japonica E-value=1e-97; Dihydroflavonol-4-reductase OS=Zea mays E-value=3e-96; Dihydroflavonol-4-reductase OS=Zea mays E-value=2e-95; Putative cinnamoyl-CoA reductase OS=Arabidopsis thaliana E-value=3e-86; ] 
LOC_Os06g46920.1 367  
Chr.  : Chr6
From  : 28469176
To    : 28471155
Strand: -
 Os.50189.2.S1_at; Os.52555.1.S1_at  May belong to CCR,DFR families; Top 5 Hits: [ Os06g0683100 protein OS=Oryza sativa subsp. japonica E-value=0; Dihydroflavonol-4-reductase OS=Zea mays E-value=0; Cinnamoyl-CoA reductase, putative OS=Ricinus communis E-value=7e-88; Dihydroflavonol-4-reductase DFR1 OS=Glycine max E-value=2e-59; Dihydroflavonol 4-reductase OS=Gossypium hirsutum E-value=1e-58; ] 
LOC_Os08g08500.1 229  
Chr.  : Chr8
From  : 4897867
To    : 4899262
Strand: -
 N/A  May belong to CCR,DFR families; Top 5 Hits: [ Dihydroflavonol-4-reductase OS=Zea mays E-value=4e-77; Os06g0623300 protein OS=Oryza sativa subsp. japonica E-value=1e-71; Dihydroflavonol-4-reductase OS=Zea mays E-value=3e-63; Os06g0623600 protein OS=Oryza sativa subsp. japonica E-value=2e-61; Cinnamoyl-CoA reductase, putative OS=Ricinus communis E-value=3e-53; ] 
LOC_Os08g17500.1 342  
Chr.  : Chr8
From  : 10717586
To    : 10719796
Strand: +
 N/A  Top 5 Hits: [ Os08g0277200 protein OS=Oryza sativa subsp. japonica E-value=0; Cinnamoyl-CoA reductase OS=Triticum aestivum E-value=0; Cinnamoyl-CoA reductase OS=Solanum lycopersicum E-value=0; Cinnamoyl-CoA reductase OS=Solanum lycopersicum E-value=0; Putative cinnamoyl-CoA reductase OS=Capsicum annuum E-value=0; ] 
LOC_Os08g34280.1 361  
Chr.  : Chr8
From  : 21503706
To    : 21510943
Strand: -
 N/A  May belong to CCR,DFR families; Top 5 Hits: [ Os08g0441500 protein OS=Oryza sativa subsp. japonica E-value=0; Cinnamoyl-CoA reductase OS=Saccharum officinarum E-value=0; Cinnamoyl-CoA reductase OS=Lolium perenne E-value=0; Dihydroflavonol-4-reductase OS=Zea mays E-value=0; Cinnamoyl CoA reductase OS=Zea mays E-value=0; ] 
LOC_Os09g04050.1 347  
Chr.  : Chr9
From  : 2082420
To    : 2085572
Strand: -
 Os.53814.1.S1_at  Top 5 Hits: [ Os09g0127300 protein OS=Oryza sativa subsp. japonica E-value=0; Cinnamoyl-CoA reductase OS=Zea mays E-value=0; Cinnamoyl-CoA reductase OS=Zea mays E-value=0; Cinnamoyl-CoA reductase OS=Zea mays E-value=0; Cinnamoyl-CoA reductase OS=Triticum aestivum E-value=0; ] 
LOC_Os09g08720.1 324  
Chr.  : Chr9
From  : 4591170
To    : 4594244
Strand: +
 N/A  Top 5 Hits: [ Putative cinnamoyl CoA reductase OS=Oryza sativa subsp. japonica E-value=0; Os09g0262000 protein OS=Oryza sativa subsp. japonica E-value=0; Os01g0283600 protein OS=Oryza sativa subsp. japonica E-value=0; Putative cinnamoyl-CoA reductase OS=Oryza sativa subsp. japonica E-value=0; Os02g0808800 protein OS=Oryza sativa subsp. japonica E-value=0; ] 
LOC_Os09g25150.1 357  
Chr.  : Chr9
From  : 15075123
To    : 15078325
Strand: -
 N/A  Top 5 Hits: [ Os09g0419200 protein OS=Oryza sativa subsp. japonica E-value=0; Cinnamoyl coenzyme A reductase (Fragment) OS=Oryza sativa subsp. japonica E-value=0; Cinnamoyl CoA reductase OS=Lolium perenne E-value=0; Cinnamoyl-CoA reductase OS=Triticum aestivum E-value=0; Cinnamoyl CoA reductase OS=Hordeum vulgare E-value=0; ] 
LOC_Os09g31490.1 343  
Chr.  : Chr9
From  : 18993539
To    : 18997420
Strand: -
 Os.15746.1.S1_at  May belong to CCR,DFR families; Top 5 Hits: [ Os09g0491788 protein OS=Oryza sativa subsp. japonica E-value=0; Os09g0491852 protein OS=Oryza sativa subsp. japonica E-value=0; Dihydroflavonol-4-reductase OS=Zea mays E-value=0; Os09g0491820 protein OS=Oryza sativa subsp. japonica E-value=0; Putative cinnamoyl-CoA reductase OS=Arabidopsis thaliana E-value=1e-90; ] 
LOC_Os09g31498.1 210  
Chr.  : Chr9
From  : 19002002
To    : 19004014
Strand: -
 N/A  May belong to DFR,CCR families; Top 5 Hits: [ Os09g0491788 protein OS=Oryza sativa subsp. japonica E-value=1e-92; Os09g0491852 protein OS=Oryza sativa subsp. japonica E-value=1e-78; Os09g0491836 protein OS=Oryza sativa subsp. japonica E-value=8e-60; Dihydroflavonol-4-reductase OS=Zea mays E-value=5e-58; Putative cinnamoyl-CoA reductase OS=Arabidopsis thaliana E-value=2e-56; ] 
LOC_Os09g31502.1 348  
Chr.  : Chr9
From  : 19010574
To    : 19013398
Strand: -
 N/A  May belong to CCR,DFR families; Top 5 Hits: [ Os09g0491820 protein OS=Oryza sativa subsp. japonica E-value=0; Dihydroflavonol-4-reductase OS=Zea mays E-value=0; Os09g0491852 protein OS=Oryza sativa subsp. japonica E-value=0; Os09g0491788 protein OS=Oryza sativa subsp. japonica E-value=0; Cinnamoyl-CoA reductase, putative OS=Ricinus communis E-value=1e-89; ] 
LOC_Os09g31514.1 347  
Chr.  : Chr9
From  : 19019420
To    : 19023332
Strand: -
 Os.17520.1.S1_at  May belong to DFR,CCR families; Top 5 Hits: [ Os09g0491852 protein OS=Oryza sativa subsp. japonica E-value=0; Os09g0491788 protein OS=Oryza sativa subsp. japonica E-value=0; Os09g0491820 protein OS=Oryza sativa subsp. japonica E-value=0; Dihydroflavonol-4-reductase OS=Zea mays E-value=9e-98; Putative cinnamoyl-CoA reductase OS=Arabidopsis thaliana E-value=3e-84; ] 
LOC_Os10g42620.1 319  
Chr.  : Chr10
From  : 22910074
To    : 22914797
Strand: +
 N/A  May belong to DFR,CCR families; Top 5 Hits: [ Os10g0576900 protein OS=Oryza sativa subsp. japonica E-value=0; Putative cinnamoyl-CoA reductase OS=Oryza sativa E-value=0; Dihydroflavonol-4-reductase OS=Zea mays E-value=0; Dihydroflavonol-4-reductase OS=Zea mays E-value=0; Cinnamoyl-CoA reductase, putative OS=Ricinus communis E-value=7e-69; ] 

Lignin > Caffeic acid 3-O-methyl-transferase (COMT)
Seq ID Length Coordinates AffyProbes Description NCBI Protein Literature
LOC_Os02g57760.1 365  
Chr.  : Chr2
From  : 35364646
To    : 35367989
Strand: +
 Os.54406.1.S1_at  Top 5 Hits: [ Os02g0823400 protein OS=Oryza sativa subsp. japonica E-value=0; Caffeic acid 3-O-methyltransferase OS=Zea mays E-value=0; Beta-alanine n-methyltransferase related OS=Populus trichocarpa E-value=0; O-methyltransferase, putative OS=Ricinus communis E-value=0; Caffeic acid O-methyltransferase-like protein OS=Arabidopsis thaliana E-value=0; ] 
LOC_Os08g06100.1 368  
Chr.  : Chr8
From  : 3336754
To    : 3339962
Strand: -
 N/A  Top 5 Hits: [ Os08g0157500 protein OS=Oryza sativa subsp. japonica E-value=0; Caffeic acid O-methyltransferase OS=Triticum aestivum E-value=0; Caffeic acid O-methyltransferase OS=Festuca arundinacea E-value=0; Flavonoid O-methyltransferase OS=Triticum aestivum E-value=0; Caffeic acid 3-O-methyltransferase OS=Triticum aestivum E-value=0; ] 
LOC_Os12g13800.1 262  
Chr.  : Chr12
From  : 7799543
To    : 7803288
Strand: -
 N/A  Top 5 Hits: [ Caffeic acid 3-O-methyltransferase, putative OS=Oryza sativa subsp. japonica E-value=0; Os12g0240900 protein OS=Oryza sativa subsp. japonica E-value=0; O-methyltransferase 1 OS=Sorghum bicolor E-value=3e-70; O-methyltransferase OS=Zea mays E-value=1e-63; Flavonoid O-methyltransferase OS=Zea mays E-value=1e-63; ] 

Lignin > Ferulic acid/coniferaldehyde/coniferyl alcohol 5-hydroxylase (F5H)
Seq ID Length Coordinates AffyProbes Description NCBI Protein Literature
LOC_Os01g12740.1 558  
Chr.  : Chr1
From  : 7047273
To    : 7049877
Strand: +
 N/A  Top 5 Hits: [ Os01g0227500 protein OS=Oryza sativa subsp. japonica E-value=0; Putative ferulate 5-hydroxylase OS=Phyllostachys praecox E-value=0; Os01g0227400 protein (Fragment) OS=Oryza sativa subsp. japonica E-value=2e-96; Os05g0361000 protein OS=Oryza sativa subsp. japonica E-value=2e-94; cDNA, clone: J075083L18, full insert sequence OS=Oryza sativa subsp. japonica E-value=7e-93; ] 
LOC_Os01g12750.1 561  
Chr.  : Chr1
From  : 7052100
To    : 7055375
Strand: +
 Os.45887.1.S1_at; Os.45887.2.S1_x_at  Top 5 Hits: [ Os01g0227500 protein OS=Oryza sativa subsp. japonica E-value=0; Putative ferulate 5-hydroxylase OS=Phyllostachys praecox E-value=0; cDNA, clone: J075083L18, full insert sequence OS=Oryza sativa subsp. japonica E-value=0; Os05g0361000 protein OS=Oryza sativa subsp. japonica E-value=0; Os01g0227800 protein OS=Oryza sativa subsp. japonica E-value=7e-99; ] 
LOC_Os01g12760.1 539  
Chr.  : Chr1
From  : 7060344
To    : 7064249
Strand: +
 N/A  Top 5 Hits: [ cDNA, clone: J075083L18, full insert sequence OS=Oryza sativa subsp. japonica E-value=0; Os01g0227800 protein OS=Oryza sativa subsp. japonica E-value=0; Putative Cytochrome P450 71A1 OS=Oryza sativa subsp. japonica E-value=0; Os05g0361000 protein OS=Oryza sativa subsp. japonica E-value=0; Putative ferulate 5-hydroxylase OS=Phyllostachys praecox E-value=0; ] 
LOC_Os01g12770.1 540  
Chr.  : Chr1
From  : 7070481
To    : 7072789
Strand: +
 Os.43415.1.A1_at  Top 5 Hits: [ Os01g0227800 protein OS=Oryza sativa subsp. japonica E-value=0; Putative Cytochrome P450 71A1 OS=Oryza sativa subsp. japonica E-value=0; cDNA, clone: J075083L18, full insert sequence OS=Oryza sativa subsp. japonica E-value=0; Os05g0361000 protein OS=Oryza sativa subsp. japonica E-value=0; Putative ferulate 5-hydroxylase OS=Phyllostachys praecox E-value=2e-94; ] 
LOC_Os01g36294.1 362  
Chr.  : Chr1
From  : 20123149
To    : 20125811
Strand: +
 N/A  Top 5 Hits: [ Putative ferulate 5-hydroxylase OS=Phyllostachys praecox E-value=0; Os08g0105400 protein OS=Oryza sativa subsp. japonica E-value=0; Putative P450 OS=Oryza sativa subsp. japonica E-value=2e-99; ] 
LOC_Os01g36350.1 360  
Chr.  : Chr1
From  : 20152435
To    : 20155382
Strand: +
 Os.38346.1.S1_x_at  Top 5 Hits: [ Putative ferulate 5-hydroxylase OS=Phyllostachys praecox E-value=1e-91; cDNA clone:001-018-D09, full insert sequence OS=Oryza sativa subsp. japonica E-value=1e-90; Os08g0105400 protein OS=Oryza sativa subsp. japonica E-value=4e-89; Putative P450 OS=Oryza sativa subsp. japonica E-value=5e-86; P450 OS=Triticum aestivum E-value=5e-86; ] 
LOC_Os01g50490.1 506  
Chr.  : Chr1
From  : 28990189
To    : 28992240
Strand: +
 N/A  Top 5 Hits: [ Os01g0700500 protein OS=Oryza sativa subsp. japonica E-value=0; Putative ferulate 5-hydroxylase OS=Phyllostachys praecox E-value=0; Flavonoid 3-monooxygenase OS=Zea mays E-value=0; Os08g0547900 protein (Fragment) OS=Oryza sativa subsp. japonica E-value=0; Putative P450 monooxygenase OS=Oryza sativa subsp. japonica E-value=0; ] 
LOC_Os02g12540.1 511  
Chr.  : Chr2
From  : 6556026
To    : 6558023
Strand: +
 OsAffx.2585.1.S1_at  Top 5 Hits: [ Os02g0217400 protein OS=Oryza sativa subsp. japonica E-value=0; Putative ferulate 5-hydroxylase OS=Phyllostachys praecox E-value=0; Putative cytochrome P450 OS=Lolium rigidum E-value=0; Os09g0275400 protein OS=Oryza sativa subsp. japonica E-value=0; Putative cytochrome P450 OS=Lolium rigidum E-value=0; ] 
LOC_Os02g12550.1 508  
Chr.  : Chr2
From  : 6559488
To    : 6562188
Strand: +
 N/A  Top 5 Hits: [ Os02g0217400 protein OS=Oryza sativa subsp. japonica E-value=0; Putative ferulate 5-hydroxylase OS=Phyllostachys praecox E-value=0; Putative cytochrome P450 OS=Lolium rigidum E-value=0; Putative cytochrome P450 OS=Lolium rigidum E-value=0; Os09g0275400 protein OS=Oryza sativa subsp. japonica E-value=0; ] 
LOC_Os03g53060.1 333  
Chr.  : Chr3
From  : 30423622
To    : 30425569
Strand: +
 N/A  Top 5 Hits: [ cDNA clone:002-172-E02, full insert sequence OS=Oryza sativa subsp. japonica E-value=0; Os09g0275400 protein OS=Oryza sativa subsp. japonica E-value=0; Putative cytochrome P450 OS=Lolium rigidum E-value=1e-96; Putative cytochrome P450 OS=Lolium rigidum E-value=6e-96; Putative ferulate 5-hydroxylase OS=Phyllostachys praecox E-value=7e-96; ] 
LOC_Os03g55240.1 732  
Chr.  : Chr3
From  : 31433633
To    : 31439004
Strand: +
 Os.11193.1.S1_at  Top 5 Hits: [ Cytochrome P450 family protein, expressed OS=Oryza sativa subsp. japonica E-value=0; Os03g0760200 protein OS=Oryza sativa subsp. japonica E-value=0; Putative cytochrome P450 OS=Oryza sativa subsp. japonica E-value=0; Putative cytochrome P450 OS=Lolium rigidum E-value=0; Putative ferulate 5-hydroxylase OS=Phyllostachys praecox E-value=0; ] 
LOC_Os03g55260.1 518  
Chr.  : Chr3
From  : 31446430
To    : 31448547
Strand: +
 Os.10430.1.S1_at  Top 5 Hits: [ Os03g0760500 protein OS=Oryza sativa subsp. japonica E-value=0; Putative cytochrome P450 OS=Oryza sativa subsp. japonica E-value=0; Putative ferulate 5-hydroxylase OS=Phyllostachys praecox E-value=0; Cytochrome P450 family protein, expressed OS=Oryza sativa subsp. japonica E-value=0; Os03g0760200 protein OS=Oryza sativa subsp. japonica E-value=0; ] 
LOC_Os04g45630.1 301  
Chr.  : Chr4
From  : 26803217
To    : 26804209
Strand: -
 N/A  Top 5 Hits: [ Aldehyde 5-hydroxylase OS=Liquidambar styraciflua E-value=6e-32; Ferulate-5-hydroxylase, putative OS=Ricinus communis E-value=1e-30; Ferulate 5-hydroxylase OS=Camptotheca acuminata E-value=2e-30; Ferulate-5-hydroxylase OS=Solanum lycopersicum x Solanum peruvianum E-value=6e-30; Ferulate-5-hydroxylase (Fragment) OS=Arabidopsis thaliana E-value=8e-30; ] 
LOC_Os05g35010.1 542  
Chr.  : Chr5
From  : 20729875
To    : 20731808
Strand: -
 N/A  Top 5 Hits: [ Os05g0424300 protein OS=Oryza sativa subsp. japonica E-value=0; Cytochrome P450 OS=Muscari armeniacum E-value=1e-89; Cytochrome P450 OS=Asparagus officinalis E-value=2e-88; Putative ferulate 5-hydroxylase OS=Phyllostachys praecox E-value=2e-86; Os08g0105400 protein OS=Oryza sativa subsp. japonica E-value=4e-81; ] 
LOC_Os05g43910.1 522  
Chr.  : Chr5
From  : 25480643
To    : 25483831
Strand: +
 Os.51231.1.S1_at  Top 5 Hits: [ Os05g0515200 protein OS=Oryza sativa subsp. japonica E-value=0; Putative cytochrome P450 OS=Oryza sativa subsp. japonica E-value=0; Cytochrome P450 OS=Lolium rigidum E-value=0; Os06g0267400 protein OS=Oryza sativa subsp. japonica E-value=0; Putative ferulate 5-hydroxylase OS=Phyllostachys praecox E-value=2e-85; ] 
LOC_Os06g15680.1 544  
Chr.  : Chr6
From  : 8875052
To    : 8876758
Strand: -
 N/A  Top 5 Hits: [ Putative cytochrome P450 OS=Oryza sativa subsp. japonica E-value=0; Os05g0515200 protein OS=Oryza sativa subsp. japonica E-value=0; Os06g0267400 protein OS=Oryza sativa subsp. japonica E-value=0; Cytochrome P450 OS=Lolium rigidum E-value=0; Putative ferulate 5-hydroxylase OS=Phyllostachys praecox E-value=1e-56; ] 
LOC_Os06g22020.1 513  
Chr.  : Chr6
From  : 12750746
To    : 12752287
Strand: +
 OsAffx.15546.1.S1_at  Top 5 Hits: [ Putative P450 OS=Oryza sativa subsp. japonica E-value=0; Os06g0325900 protein OS=Oryza sativa subsp. japonica E-value=0; Os08g0105400 protein OS=Oryza sativa subsp. japonica E-value=0; Putative ferulate 5-hydroxylase OS=Phyllostachys praecox E-value=0; Putative P450 OS=Oryza sativa subsp. japonica E-value=0; ] 
LOC_Os06g24180.1 529  
Chr.  : Chr6
From  : 14149817
To    : 14152225
Strand: -
 OsAffx.4924.1.S1_at  Top 5 Hits: [ Os06g0349700 protein OS=Oryza sativa subsp. japonica E-value=0; Os10g0512400 protein OS=Oryza sativa subsp. japonica E-value=0; Ferulate 5-hydroxylase OS=Camptotheca acuminata E-value=0; Coniferyl aldehyde 5-hydroxylase OS=Populus trichocarpa E-value=0; Coniferylaldehyde 5-hydroxylase OS=Populus trichocarpa E-value=0; ] 
LOC_Os08g01450.1 507  
Chr.  : Chr8
From  : 287778
To    : 289301
Strand: -
 OsAffx.28975.2.S1_at  Top 5 Hits: [ Os08g0105400 protein OS=Oryza sativa subsp. japonica E-value=0; Putative P450 OS=Oryza sativa subsp. japonica E-value=0; Os06g0325900 protein OS=Oryza sativa subsp. japonica E-value=0; Putative ferulate 5-hydroxylase OS=Phyllostachys praecox E-value=0; Putative P450 OS=Oryza sativa subsp. japonica E-value=0; ] 
LOC_Os08g01470.1 340  
Chr.  : Chr8
From  : 292377
To    : 293882
Strand: -
 OsAffx.28975.1.S1_at  Top 5 Hits: [ Os08g0105600 protein OS=Oryza sativa subsp. japonica E-value=0; Os08g0105400 protein OS=Oryza sativa subsp. japonica E-value=8e-81; Putative P450 OS=Oryza sativa subsp. japonica E-value=2e-69; Os06g0325900 protein OS=Oryza sativa subsp. japonica E-value=3e-69; Putative ferulate 5-hydroxylase OS=Phyllostachys praecox E-value=1e-60; ] 
LOC_Os08g01480.1 390  
Chr.  : Chr8
From  : 295908
To    : 297367
Strand: -
 N/A  Top 5 Hits: [ cDNA clone:001-018-D09, full insert sequence OS=Oryza sativa subsp. japonica E-value=0; Os08g0105400 protein OS=Oryza sativa subsp. japonica E-value=0; Putative ferulate 5-hydroxylase OS=Phyllostachys praecox E-value=0; Putative P450 OS=Oryza sativa subsp. japonica E-value=0; Os06g0325900 protein OS=Oryza sativa subsp. japonica E-value=0; ] 
LOC_Os08g01490.1 549  
Chr.  : Chr8
From  : 300642
To    : 303056
Strand: -
 Os.15815.1.S1_at; Os.15815.2.S1_x_at  Top 5 Hits: [ Os08g0105800 protein OS=Oryza sativa subsp. japonica E-value=0; Putative cytochrome P450 OS=Oryza sativa subsp. japonica E-value=0; Putative ferulate 5-hydroxylase OS=Phyllostachys praecox E-value=0; Putative P450 OS=Oryza sativa subsp. japonica E-value=0; P450 OS=Triticum aestivum E-value=0; ] 
LOC_Os08g43440.1 517  
Chr.  : Chr8
From  : 27476347
To    : 27478454
Strand: -
 Os.5369.1.S1_at  Top 5 Hits: [ Os08g0547900 protein (Fragment) OS=Oryza sativa subsp. japonica E-value=0; Putative ferulate 5-hydroxylase OS=Phyllostachys praecox E-value=0; Putative P450 monooxygenase OS=Oryza sativa subsp. japonica E-value=0; Flavonoid 3-monooxygenase OS=Zea mays E-value=0; Os01g0700500 protein OS=Oryza sativa subsp. japonica E-value=0; ] 
LOC_Os09g10340.1 509  
Chr.  : Chr9
From  : 5642294
To    : 5644523
Strand: -
 Os.17076.1.S1_at  Top 5 Hits: [ Os09g0275400 protein OS=Oryza sativa subsp. japonica E-value=0; Putative cytochrome P450 OS=Lolium rigidum E-value=0; Putative cytochrome P450 OS=Lolium rigidum E-value=0; Putative ferulate 5-hydroxylase OS=Phyllostachys praecox E-value=0; Os02g0217400 protein OS=Oryza sativa subsp. japonica E-value=0; ] 
LOC_Os10g36848.1 530  
Chr.  : Chr10
From  : 19656754
To    : 19663541
Strand: -
 Os.9727.1.S1_at  Top 5 Hits: [ Os10g0512400 protein OS=Oryza sativa subsp. japonica E-value=0; Cytochrome P450 CYP84A33v1 OS=Zea mays E-value=0; Cytochrome P450 CYP84A34 OS=Zea mays E-value=0; Cytochrome P450 CYP84A33v2 OS=Zea mays E-value=0; Ferulate 5-hydroxylase OS=Camptotheca acuminata E-value=0; ] 
LOC_Os11g27730.1 513  
Chr.  : Chr11
From  : 15491394
To    : 15495248
Strand: -
 Os.11110.1.S1_at  Top 5 Hits: [ Cytochrome P450 family protein, expressed OS=Oryza sativa subsp. japonica E-value=0; Cytochrome P450 family protein, expressed OS=Oryza sativa subsp. japonica E-value=0; Putative ferulate 5-hydroxylase OS=Phyllostachys praecox E-value=0; Cytochrome P450 CYP71C36 OS=Zea mays E-value=0; Os08g0105400 protein OS=Oryza sativa subsp. japonica E-value=0; ] 
LOC_Os11g28060.1 271  
Chr.  : Chr11
From  : 15664256
To    : 15665452
Strand: -
 OsAffx.7230.1.S1_at  Top 5 Hits: [ Cytochrome P450 71C4, putative OS=Oryza sativa subsp. japonica E-value=0; Os11g0469900 protein OS=Oryza sativa subsp. japonica E-value=0; Cytochrome P450 family protein, expressed OS=Oryza sativa subsp. japonica E-value=0; Putative ferulate 5-hydroxylase OS=Phyllostachys praecox E-value=2e-88; Putative P450 OS=Oryza sativa subsp. japonica E-value=9e-86; ] 
LOC_Os11g28065.1 203  
Chr.  : Chr11
From  : 15665552
To    : 15667318
Strand: -
 N/A  Top 5 Hits: [ Cytochrome P450 family protein, expressed OS=Oryza sativa subsp. japonica E-value=6e-40; Cytochrome P450 family protein, expressed OS=Oryza sativa subsp. japonica E-value=7e-40; Putative ferulate 5-hydroxylase OS=Phyllostachys praecox E-value=2e-30; Cytochrome P450 CYP71C36 OS=Zea mays E-value=6e-30; Cytochrome P450 OS=Triticum monococcum subsp. aegilopoides E-value=3e-29; ] 
LOC_Os12g44290.1 513  
Chr.  : Chr12
From  : 27417687
To    : 27419435
Strand: -
 OsAffx.20116.1.S1_at  Top 5 Hits: [ Putative cytochrome P450 OS=Lolium rigidum E-value=0; Putative cytochrome P450 OS=Lolium rigidum E-value=0; Os09g0275400 protein OS=Oryza sativa subsp. japonica E-value=0; Putative cytochrome P450 OS=Lolium rigidum E-value=0; Putative ferulate 5-hydroxylase OS=Phyllostachys praecox E-value=0; ] 

Lignin > Hydroxycinnamoyl Coenzyme A: shikimate hydroxycinnamoyl transferase (HCT)
Seq ID Length Coordinates AffyProbes Description NCBI Protein Literature
LOC_Os01g70025.1 437  
Chr.  : Chr1
From  : 40507915
To    : 40509801
Strand: +
 OsAffx.23984.1.S1_x_at  Top 5 Hits: [ Putative hydroxyanthranilate hydroxycinnamoyltransferase OS=Oryza sativa subsp. japonica E-value=0; Os01g0924933 protein (Fragment) OS=Oryza sativa subsp. japonica E-value=0; Taxadien-5-alpha-ol O-acetyltransferase, putative OS=Ricinus communis E-value=0; Hydroxycinnamoyl CoA shikimate/quinate hydroxycinnamoyltransferase-like protein (Fragment) OS=Populus trichocarpa E-value=0; Hydroxycinnamoyl CoA shikimate/quinate hydroxycinnamoyltransferase-like protein OS=Populus trichocarpa E-value=0; ] 
LOC_Os11g31090.1 462  
Chr.  : Chr11
From  : 17626823
To    : 17629496
Strand: +
 N/A  Top 5 Hits: [ Transferase family protein, putative, expressed OS=Oryza sativa subsp. japonica E-value=0; Os11g0507200 protein OS=Oryza sativa subsp. japonica E-value=0; Transferase OS=Zea mays E-value=0; Anthranilate N-benzoyltransferase protein, putative OS=Ricinus communis E-value=0; Hydroxycinnamoyl CoA shikimate/quinate hydroxycinnamoyltransferase-like protein (Fragment) OS=Populus trichocarpa E-value=0; ] 

Lignin > Laccase (Laccase)
Seq ID Length Coordinates AffyProbes Description NCBI Protein Literature
LOC_Os01g27700.1 552  
Chr.  : Chr1
From  : 15444432
To    : 15446607
Strand: +
 OsAffx.30603.4.S1_x_at  Top 5 Hits: [ cDNA, clone: J065097H05, full insert sequence OS=Oryza sativa subsp. japonica E-value=0; Putative laccase OS=Zea mays E-value=0; ] 
LOC_Os01g44330.1 562  
Chr.  : Chr1
From  : 25438038
To    : 25440035
Strand: -
 N/A  Top 5 Hits: [ Laccase, putative OS=Ricinus communis E-value=0; Laccase, putative OS=Ricinus communis E-value=0; Laccase OS=Pinus taeda E-value=0; Laccase, putative OS=Ricinus communis E-value=0; Laccase 3 OS=Populus trichocarpa E-value=0; ] 
LOC_Os01g61160.1 567  
Chr.  : Chr1
From  : 35401752
To    : 35404266
Strand: +
 Os.34310.1.S1_at  Top 5 Hits: [ L-ascorbate oxidase OS=Zea mays E-value=0; Laccase 90c OS=Populus trichocarpa E-value=0; Laccase 90a OS=Populus trichocarpa E-value=0; Laccase, putative OS=Ricinus communis E-value=0; Laccase, putative OS=Ricinus communis E-value=0; ] 
LOC_Os01g62480.1 579  
Chr.  : Chr1
From  : 36164877
To    : 36167896
Strand: -
 N/A  Top 5 Hits: [ cDNA clone:J013170B10, full insert sequence OS=Oryza sativa subsp. japonica E-value=0; Putative laccase OS=Zea mays E-value=0; Laccase LAC5-6 OS=Lolium perenne E-value=0; L-ascorbate oxidase OS=Zea mays E-value=0; Os01g0842500 protein OS=Oryza sativa subsp. japonica E-value=0; ] 
LOC_Os01g62490.1 577  
Chr.  : Chr1
From  : 36176246
To    : 36179084
Strand: -
 Os.9615.1.S1_at  Top 5 Hits: [ Os01g0842500 protein OS=Oryza sativa subsp. japonica E-value=0; L-ascorbate oxidase OS=Zea mays E-value=0; Putative laccase OS=Zea mays E-value=0; cDNA clone:J013170B10, full insert sequence OS=Oryza sativa subsp. japonica E-value=0; Laccase LAC5-6 OS=Lolium perenne E-value=0; ] 
LOC_Os01g62600.1 547  
Chr.  : Chr1
From  : 36235799
To    : 36238023
Strand: +
 N/A  Top 5 Hits: [ Os01g0844050 protein OS=Oryza sativa subsp. japonica E-value=0; L-ascorbate oxidase OS=Zea mays E-value=0; Putative laccase OS=Zea mays E-value=0; Putative laccase OS=Zea mays E-value=0; Laccase, putative OS=Ricinus communis E-value=0; ] 
LOC_Os01g63180.1 482  
Chr.  : Chr1
From  : 36615758
To    : 36620473
Strand: +
 N/A  Top 5 Hits: [ cDNA, clone: J100004A16, full insert sequence OS=Oryza sativa subsp. japonica E-value=0; Os07g0101000 protein OS=Oryza sativa subsp. japonica E-value=0; Laccase 110a OS=Populus trichocarpa E-value=0; Laccase, putative OS=Ricinus communis E-value=0; Laccase OS=Solanum lycopersicum E-value=0; ] 
LOC_Os01g63190.1 559  
Chr.  : Chr1
From  : 36621784
To    : 36626632
Strand: +
 Os.14830.1.S1_a_at  Top 5 Hits: [ Laccase LAC5-4 OS=Lolium perenne E-value=0; Laccase 1 OS=Zea mays E-value=0; Laccase 110a OS=Populus trichocarpa E-value=0; Laccase, putative OS=Ricinus communis E-value=0; Os07g0101000 protein OS=Oryza sativa subsp. japonica E-value=0; ] 
LOC_Os01g63200.1 554  
Chr.  : Chr1
From  : 36633288
To    : 36635937
Strand: +
 Os.42420.1.S1_at  Top 5 Hits: [ Laccase LAC5-4 OS=Lolium perenne E-value=0; Laccase LAC6-8 (Fragment) OS=Lolium perenne E-value=0; Laccase 1 OS=Zea mays E-value=0; Laccase 110a OS=Populus trichocarpa E-value=0; Os07g0101000 protein OS=Oryza sativa subsp. japonica E-value=0; ] 
LOC_Os02g51440.1 579  
Chr.  : Chr2
From  : 31509432
To    : 31511915
Strand: -
 N/A  Top 5 Hits: [ cDNA, clone: J065097H05, full insert sequence OS=Oryza sativa subsp. japonica E-value=0; Putative laccase OS=Zea mays E-value=0; ] 
LOC_Os03g16610.1 578  
Chr.  : Chr3
From  : 9166494
To    : 9169270
Strand: -
 Os.5638.1.S1_at  Top 5 Hits: [ Laccase OS=Liriodendron tulipifera E-value=0; Laccase OS=Liriodendron tulipifera E-value=0; Laccase OS=Liriodendron tulipifera E-value=0; Laccase, putative OS=Ricinus communis E-value=0; ] 
LOC_Os03g18640.1 681  
Chr.  : Chr3
From  : 10442168
To    : 10444939
Strand: +
 N/A  Top 5 Hits: [ Multicopper oxidase family protein, expressed OS=Oryza sativa subsp. japonica E-value=0; Os03g0297900 protein OS=Oryza sativa subsp. japonica E-value=0; Laccase, putative OS=Ricinus communis E-value=0; Diphenol oxidase laccase OS=Glycine max E-value=0; Laccase 90d (Fragment) OS=Populus trichocarpa E-value=0; ] 
LOC_Os05g38390.1 513  
Chr.  : Chr5
From  : 22438796
To    : 22440602
Strand: -
 OsAffx.27223.1.S1_at  Top 5 Hits: [ Putative laccase OS=Zea mays E-value=0; L-ascorbate oxidase OS=Zea mays E-value=0; Putative laccase OS=Zea mays E-value=0; Os01g0844050 protein OS=Oryza sativa subsp. japonica E-value=0; Laccase, putative OS=Ricinus communis E-value=0; ] 
LOC_Os05g38410.1 549  
Chr.  : Chr5
From  : 22464173
To    : 22466149
Strand: -
 N/A  Top 5 Hits: [ Os01g0842500 protein OS=Oryza sativa subsp. japonica E-value=0; L-ascorbate oxidase OS=Zea mays E-value=0; Putative laccase OS=Zea mays E-value=0; cDNA clone:J013170B10, full insert sequence OS=Oryza sativa subsp. japonica E-value=0; Laccase LAC5-6 OS=Lolium perenne E-value=0; ] 
LOC_Os05g38420.1 574  
Chr.  : Chr5
From  : 22470978
To    : 22473543
Strand: +
 Os.51049.1.S1_at  Top 5 Hits: [ Os01g0842500 protein OS=Oryza sativa subsp. japonica E-value=0; L-ascorbate oxidase OS=Zea mays E-value=0; Putative laccase OS=Zea mays E-value=0; cDNA clone:J013170B10, full insert sequence OS=Oryza sativa subsp. japonica E-value=0; Laccase LAC5-6 OS=Lolium perenne E-value=0; ] 
LOC_Os07g01110.1 583  
Chr.  : Chr7
From  : 57610
To    : 59650
Strand: -
 OsAffx.5170.1.S1_at  Top 5 Hits: [ Os07g0101000 protein OS=Oryza sativa subsp. japonica E-value=0; Laccase, putative OS=Ricinus communis E-value=0; Laccase 110a OS=Populus trichocarpa E-value=0; cDNA, clone: J100004A16, full insert sequence OS=Oryza sativa subsp. japonica E-value=0; Laccase OS=Solanum lycopersicum E-value=0; ] 
LOC_Os10g20610.1 599  
Chr.  : Chr10
From  : 10319700
To    : 10325441
Strand: -
 N/A  Top 5 Hits: [ cDNA clone:J013093P21, full insert sequence OS=Oryza sativa subsp. japonica E-value=0; Laccase LAC2-1 OS=Lolium perenne E-value=0; Laccase 110a OS=Populus trichocarpa E-value=0; Laccase, putative OS=Ricinus communis E-value=0; Laccase OS=Solanum lycopersicum E-value=0; ] 
LOC_Os10g30140.1 467  
Chr.  : Chr10
From  : 15588248
To    : 15590099
Strand: +
 N/A  Top 5 Hits: [ cDNA, clone: J065097H05, full insert sequence OS=Oryza sativa subsp. japonica E-value=0; Putative laccase OS=Zea mays E-value=0; Putative laccase OS=Rosa hybrid cultivar E-value=0; ] 
LOC_Os11g01730.1 567  
Chr.  : Chr11
From  : 391254
To    : 395913
Strand: +
 N/A  Top 5 Hits: [ Laccase 90c OS=Populus trichocarpa E-value=0; Laccase 90a OS=Populus trichocarpa E-value=0; Laccase, putative OS=Ricinus communis E-value=0; Laccase, putative OS=Ricinus communis E-value=0; L-ascorbate oxidase OS=Zea mays E-value=0; ] 
LOC_Os11g16260.1 595  
Chr.  : Chr11
From  : 8943384
To    : 8945816
Strand: -
 N/A  Top 5 Hits: [ cDNA clone:J013093P21, full insert sequence OS=Oryza sativa subsp. japonica E-value=0; Laccase LAC2-1 OS=Lolium perenne E-value=0; Laccase 110a OS=Populus trichocarpa E-value=0; cDNA, clone: J100004A16, full insert sequence OS=Oryza sativa subsp. japonica E-value=0; Laccase 90c OS=Populus trichocarpa E-value=0; ] 
LOC_Os11g42200.1 590  
Chr.  : Chr11
From  : 24957540
To    : 24960053
Strand: +
 Os.54291.1.S1_at  Top 5 Hits: [ cDNA clone:J013093P21, full insert sequence OS=Oryza sativa subsp. japonica E-value=0; Laccase LAC2-1 OS=Lolium perenne E-value=0; Laccase 110a OS=Populus trichocarpa E-value=0; cDNA, clone: J100004A16, full insert sequence OS=Oryza sativa subsp. japonica E-value=0; Laccase 90c OS=Populus trichocarpa E-value=0; ] 
LOC_Os11g42220.1 580  
Chr.  : Chr11
From  : 24966262
To    : 24968632
Strand: +
 Os.8440.1.S1_at  Top 5 Hits: [ cDNA clone:J013093P21, full insert sequence OS=Oryza sativa subsp. japonica E-value=0; Laccase LAC2-1 OS=Lolium perenne E-value=0; cDNA, clone: J100004A16, full insert sequence OS=Oryza sativa subsp. japonica E-value=0; Laccase 110a OS=Populus trichocarpa E-value=0; Putative copper ion-binding laccase OS=Pisum sativum E-value=0; ] 
LOC_Os11g47390.1 583  
Chr.  : Chr11
From  : 27985223
To    : 27987942
Strand: -
 N/A  Top 5 Hits: [ cDNA, clone: J065097H05, full insert sequence OS=Oryza sativa subsp. japonica E-value=0; Putative laccase OS=Zea mays E-value=0; Putative laccase OS=Rosa hybrid cultivar E-value=0; ] 
LOC_Os11g48060.1 586  
Chr.  : Chr11
From  : 28449899
To    : 28453122
Strand: +
 N/A  Top 5 Hits: [ Laccase 1a OS=Populus trichocarpa E-value=0; Diphenol oxidase OS=Nicotiana tabacum E-value=0; Laccase, putative OS=Ricinus communis E-value=0; Laccase 1b OS=Populus trichocarpa E-value=0; Laccase 1d (Fragment) OS=Populus trichocarpa E-value=0; ] 
LOC_Os12g01730.1 567  
Chr.  : Chr12
From  : 433076
To    : 437686
Strand: +
 Os.56166.1.S1_at  Top 5 Hits: [ Laccase 90c OS=Populus trichocarpa E-value=0; Laccase 90a OS=Populus trichocarpa E-value=0; Laccase, putative OS=Ricinus communis E-value=0; Laccase, putative OS=Ricinus communis E-value=0; L-ascorbate oxidase OS=Zea mays E-value=0; ] 
LOC_Os12g15680.1 598  
Chr.  : Chr12
From  : 8958185
To    : 8961426
Strand: +
 N/A  Top 5 Hits: [ cDNA, clone: J100004A16, full insert sequence OS=Oryza sativa subsp. japonica E-value=0; Laccase 110a OS=Populus trichocarpa E-value=0; Laccase, putative OS=Ricinus communis E-value=0; Laccase OS=Solanum lycopersicum E-value=0; Os07g0101000 protein OS=Oryza sativa subsp. japonica E-value=0; ] 
LOC_Os12g15920.1 658  
Chr.  : Chr12
From  : 9066427
To    : 9074693
Strand: +
 OsAffx.19698.1.S1_at  Top 5 Hits: [ cDNA, clone: J100004A16, full insert sequence OS=Oryza sativa subsp. japonica E-value=0; Laccase 110a OS=Populus trichocarpa E-value=0; Os07g0101000 protein OS=Oryza sativa subsp. japonica E-value=0; Laccase, putative OS=Ricinus communis E-value=0; Laccase OS=Solanum lycopersicum E-value=0; ] 


  © 2010 by The Samuel Roberts Noble Foundation, Inc.