The Online Data Resource for Review:
Phenylpropanoids and plant defense -- an updated genomic perspective   
 
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Core phenylpropanoid pathway > 4-Coumarate: Coenzyme A ligase (4CL)
Seq ID Length Coordinates AffyProbes Description NCBI Protein Literature
chr2.CM0020.270.nc 556 
N/A
N/A  Top 5 Hits: [ 4-coumarate-coa ligase OS=Populus trichocarpa E-value=0; Acyl:coa ligase OS=Populus trichocarpa E-value=0; AMP dependent CoA ligase, putative OS=Ricinus communis E-value=0; Os08g0143300 protein OS=Oryza sativa subsp. japonica E-value=0; Os10g0578950 protein OS=Oryza sativa subsp. japonica E-value=0; ] 
chr3.CM0070.120.nc 397 
N/A
N/A  Top 5 Hits: [ AMP dependent CoA ligase, putative OS=Ricinus communis E-value=0; 4-coumarate-coa ligase OS=Populus trichocarpa E-value=0; 4-coumarate-coa ligase OS=Populus trichocarpa E-value=0; AMP dependent CoA ligase, putative OS=Ricinus communis E-value=0; cDNA, clone: J075140K23, full insert sequence OS=Oryza sativa subsp. japonica E-value=0; ] 
chr1.CM0064.390.nc 536 
N/A
N/A  Top 5 Hits: [ 4-coumarate-coa ligase OS=Populus trichocarpa E-value=0; AMP dependent CoA ligase, putative OS=Ricinus communis E-value=0; AMP dependent CoA ligase, putative OS=Ricinus communis E-value=0; 4-coumarate-coa ligase OS=Populus trichocarpa E-value=0; Acyl:coa ligase OS=Populus trichocarpa E-value=0; ] 
chr4.CM0061.190.nc 547 
N/A
N/A  Top 5 Hits: [ 4-coumarate:coenzyme A ligase OS=Glycine max E-value=0; 4-Coumarate:CoA ligase OS=Populus trichocarpa E-value=0; 4-coumarate:CoA ligase 1 OS=Populus trichocarpa x Populus deltoides E-value=0; 4-Coumarate:CoA ligase (Fragment) OS=Populus trichocarpa E-value=0; AMP dependent CoA ligase, putative OS=Ricinus communis E-value=0; ] 
chr2.CM0018.1240.nc 581 
N/A
N/A  Top 5 Hits: [ 4-coumarate:CoA ligase isoenzyme 3 OS=Glycine max E-value=0; 4-coumarate:CoA ligase OS=Glycine max E-value=0; AMP dependent CoA ligase, putative OS=Ricinus communis E-value=0; 4-coumarate:CoA ligase OS=Populus tremuloides E-value=0; 4-Coumarate:CoA ligase OS=Populus trichocarpa E-value=0; ] 
chr3.CM0127.410.nc 557 
N/A
N/A  Top 5 Hits: [ 4-coumarate:CoA ligase isoenzyme 3 OS=Glycine max E-value=0; AMP dependent CoA ligase, putative OS=Ricinus communis E-value=0; 4-coumarate:CoA ligase OS=Ipomoea batatas E-value=0; 4-Coumarate:CoA ligase OS=Populus trichocarpa E-value=0; 4-coumarate:CoA ligase OS=Populus tremuloides E-value=0; ] 
LjSGA_063891.1 350 
N/A
N/A  Top 5 Hits: [ 4-coumarate-CoA ligase-like protein (Fragment) OS=Coffea arabica E-value=0; Putative acyl-CoA synthetase OS=Capsicum annuum E-value=0; AMP dependent CoA ligase, putative OS=Ricinus communis E-value=0; Acyl:coa ligase OS=Populus trichocarpa E-value=0; 4-coumarate-CoA ligase-like protein OS=Arabidopsis thaliana E-value=0; ] 
LjSGA_088777.2 330 
N/A
N/A  Top 5 Hits: [ AMP dependent CoA ligase, putative OS=Ricinus communis E-value=3e-77; 4-coumarate-coa ligase OS=Populus trichocarpa E-value=4e-68; Acyl:coa ligase OS=Populus trichocarpa E-value=5e-68; Acyl:coa ligase OS=Populus trichocarpa E-value=3e-67; 4-coumarate-coa ligase OS=Populus trichocarpa E-value=7e-63; ] 
LjSGA_030709.1 352 
N/A
N/A  Top 5 Hits: [ 4-coumarate-coa ligase OS=Populus trichocarpa E-value=0; AMP dependent CoA ligase, putative OS=Ricinus communis E-value=0; 4-coumarate-coa ligase OS=Populus trichocarpa E-value=0; AMP dependent CoA ligase, putative OS=Ricinus communis E-value=3e-93; cDNA, clone: J075140K23, full insert sequence OS=Oryza sativa subsp. japonica E-value=8e-70; ] 
LjSGA_037033.1 383 
N/A
N/A  Top 5 Hits: [ Acyl:coa ligase OS=Populus trichocarpa E-value=0; AMP dependent CoA ligase, putative OS=Ricinus communis E-value=0; 4-coumarate:CoA ligase-like OS=Nicotiana sylvestris E-value=0; 4-coumarate--CoA ligase 2 OS=Zea mays E-value=0; H0211A12.17 protein OS=Oryza sativa E-value=0; ] 
LjSGA_047173.2 246 
N/A
N/A  Top 5 Hits: [ 4-coumarate:CoA ligase OS=Amorpha fruticosa E-value=5e-93; 4-coumarate CoA ligase 2 (Fragment) OS=Leucaena glauca E-value=3e-88; AMP dependent CoA ligase, putative OS=Ricinus communis E-value=3e-87; 4-coumarate:CoA ligase isoenzyme 2 OS=Glycine max E-value=4e-86; 4-coumarate coenzyme A ligase OS=Betula luminifera E-value=1e-83; ] 
LjSGA_094072.1 323 
N/A
N/A  Top 5 Hits: [ AMP dependent CoA ligase, putative OS=Ricinus communis E-value=1e-47; 4-coumarate-coa ligase OS=Populus trichocarpa E-value=2e-41; Acyl:coa ligase OS=Populus trichocarpa E-value=2e-41; 4-coumarate:CoA ligase OS=Populus trichocarpa E-value=4e-38; Acyl:coa ligase OS=Populus trichocarpa E-value=4e-38; ] 

Core phenylpropanoid pathway > Cinnamate 4-hydroxylase (C4H)
Seq ID Length Coordinates AffyProbes Description NCBI Protein Literature
chr5.LjT24B10.30.nc 530 
N/A
N/A  Top 5 Hits: [ Cinnamate 4-hydroxylase OS=Phaseolus vulgaris E-value=0; Cinnamate 4-hydroxylase CYP73 OS=Citrus sinensis E-value=0; Trans-cinnamate 4-monooxygenase OS=Populus trichocarpa E-value=0; Cinnamate 4-hydroxylase, putative OS=Ricinus communis E-value=0; Elicitor-inducible cytochrome P450 OS=Nicotiana tabacum E-value=0; ] 
LjSGA_082453.1 232 
N/A
N/A  Top 5 Hits: [ Cinnamate-4-hydroxylase OS=Canarium album E-value=2e-88; Trans-cinnamate 4-hydroxylase OS=Populus tremuloides E-value=7e-88; Trans-cinnamate 4-hydroxylase OS=Populus tremuloides E-value=7e-88; Cytochrome P450 OS=Populus trichocarpa E-value=1e-87; Cinnamic acid 4-hydroxylase (Fragment) OS=Populus kitakamiensis E-value=1e-87; ] 
LjSGA_003295.2 529 
N/A
N/A  Top 5 Hits: [ Trans-cinnamate 4-monooxygenase OS=Populus trichocarpa E-value=0; Cinnamate 4-hydroxylase OS=Phaseolus vulgaris E-value=0; Cinnamate 4-hydroxylase, putative OS=Ricinus communis E-value=0; Cinnamate 4-hydroxylase CYP73 OS=Citrus sinensis E-value=0; Elicitor-inducible cytochrome P450 OS=Nicotiana tabacum E-value=0; ] 
LjSGA_029001.1 221 
N/A
N/A  Top 5 Hits: [ Cinnamate-4-hydroxylase OS=Gossypium arboreum E-value=0; Coumarate 4-hydroxylase OS=Glycine max E-value=0; C4H OS=Glycine max E-value=0; Cinnamate 4-hydroxylase OS=Populus trichocarpa x Populus deltoides E-value=0; Cytochrome P450 cinnamate 4-hydroxylase OS=Populus trichocarpa E-value=0; ] 

Core phenylpropanoid pathway > L-Phenylalanine ammonia-lyase (PAL)
Seq ID Length Coordinates AffyProbes Description NCBI Protein Literature
chr1.CM0033.800.nc 717 
N/A
N/A  Top 5 Hits: [ Phenylalanine ammonia-lyase OS=Lotus japonicus E-value=0; Phenylalanine ammonia-lyase OS=Lotus japonicus E-value=0; Phenylalanine ammonia-lyase (Fragment) OS=Lotus japonicus E-value=0; Phenylalanine ammonia-lyase (Fragment) OS=Lotus japonicus E-value=0; Phenylalanine ammonia-lyase (Fragment) OS=Lotus japonicus E-value=0; ] 
chr1.CM0033.820.nc 715 
N/A
N/A  Top 5 Hits: [ Phenylalanine ammonia-lyase OS=Lotus japonicus E-value=0; Phenylalanine ammonia-lyase (Fragment) OS=Lotus japonicus E-value=0; Phenylalanine ammonia-lyase OS=Lotus japonicus E-value=0; Phenylalanine ammonia-lyase (Fragment) OS=Lotus japonicus E-value=0; Phenylalanine ammonia-lyase (Fragment) OS=Lotus japonicus E-value=0; ] 
chr1.CM0033.830.nc 717 
N/A
N/A  Top 5 Hits: [ Phenylalanine ammonia-lyase (Fragment) OS=Lotus japonicus E-value=0; Phenylalanine ammonia-lyase OS=Lotus japonicus E-value=0; Phenylalanine ammonia-lyase OS=Lotus japonicus E-value=0; Phenylalanine ammonia-lyase (Fragment) OS=Lotus japonicus E-value=0; Phenylalanine ammonia-lyase (Fragment) OS=Lotus japonicus E-value=0; ] 
chr1.CM0033.850.nc 717 
N/A
N/A  Top 5 Hits: [ Phenylalanine ammonia-lyase OS=Lotus japonicus E-value=0; Phenylalanine ammonia-lyase OS=Lotus japonicus E-value=0; Phenylalanine ammonia-lyase (Fragment) OS=Lotus japonicus E-value=0; Phenylalanine ammonia-lyase (Fragment) OS=Lotus japonicus E-value=0; Phenylalanine ammonia-lyase (Fragment) OS=Lotus japonicus E-value=0; ] 
chr1.CM0033.960.nc 716 
N/A
N/A  Top 5 Hits: [ Phenylalanine ammonia-lyase OS=Lotus japonicus E-value=0; Phenylalanine ammonia-lyase OS=Lotus japonicus E-value=0; Phenylalanine ammonia-lyase (Fragment) OS=Lotus japonicus E-value=0; Phenylalanine ammonia-lyase (Fragment) OS=Lotus japonicus E-value=0; Phenylalanine ammonia-lyase (Fragment) OS=Lotus japonicus E-value=0; ] 
chr1.CM0033.970.nc 717 
N/A
N/A  Top 5 Hits: [ Phenylalanine ammonia-lyase OS=Lotus japonicus E-value=0; Phenylalanine ammonia-lyase OS=Lotus japonicus E-value=0; Phenylalanine ammonia-lyase (Fragment) OS=Lotus japonicus E-value=0; Phenylalanine ammonia-lyase (Fragment) OS=Lotus japonicus E-value=0; Phenylalanine ammonia-lyase (Fragment) OS=Lotus japonicus E-value=0; ] 
chr2.CM0191.770.nc 706 
N/A
N/A  Top 5 Hits: [ Phenylalanine ammonia-lyase OS=Ricinus communis E-value=0; Phenylalanine ammonia-lyase OS=Vitis vinifera E-value=0; Phenylalanine ammonia-lyase OS=Vitis vinifera E-value=0; Phenylalanine ammonia-lyase OS=Vitis vinifera E-value=0; Phenylalanine ammonia-lyase OS=Vitis vinifera E-value=0; ] 
chr3.CM0574.220.nd 715 
N/A
N/A  Top 5 Hits: [ Phenylalanine ammonia-lyase OS=Lotus japonicus E-value=0; Phenylalanine ammonia-lyase OS=Lotus japonicus E-value=0; Phenylalanine ammonia-lyase OS=Lotus japonicus E-value=0; Phenylalanine ammonia-lyase (Fragment) OS=Lotus japonicus E-value=0; Phenylalanine ammonia-lyase (Fragment) OS=Lotus japonicus E-value=0; ] 
chr1.CM0442.20.nd 474 
N/A
N/A  Top 5 Hits: [ Phenylalanine ammonia-lyase (Fragment) OS=Lotus japonicus E-value=0; Phenylalanine ammonia-lyase (Fragment) OS=Lotus japonicus E-value=0; Phenylalanine ammonia-lyase OS=Lotus japonicus E-value=0; Phenylalanine ammonia-lyase OS=Lotus japonicus E-value=0; Phenylalanine ammonia-lyase (Fragment) OS=Lotus japonicus E-value=0; ] 
CM1729.60.nc 732 
N/A
N/A  Top 5 Hits: [ Phenylalanine ammonia-lyase OS=Lotus japonicus E-value=0; Phenylalanine ammonia-lyase OS=Astragalus mongholicus E-value=0; Phenylalanine ammonia-lyase OS=Trifolium pratense E-value=0; Phenylalanine ammonia-lyase OS=Trifolium pratense E-value=0; Phenylalanine ammonia-lyase OS=Glycine max E-value=0; ] 
chr5.LjT17D03.50.nd 616 
N/A
N/A  Top 5 Hits: [ Phenylalanine ammonia-lyase OS=Ricinus communis E-value=0; Phenylalanine ammonia-lyase (Fragment) OS=Vigna unguiculata E-value=0; Phenylalanine ammonia-lyase OS=Manihot esculenta E-value=0; Phenylalanine ammonia-lyase OS=Populus trichocarpa E-value=0; Phenylalanine ammonia-lyase OS=Quercus suber E-value=0; ] 
LjSGA_045709.1 271 
N/A
N/A  Top 5 Hits: [ Phenylalanine ammonia-lyase OS=Lotus japonicus E-value=0; Phenylalanine ammonia-lyase OS=Lotus japonicus E-value=0; Phenylalanine ammonia-lyase (Fragment) OS=Lotus japonicus E-value=0; Phenylalanine ammonia-lyase (Fragment) OS=Lotus japonicus E-value=0; Phenylalanine ammonia-lyase (Fragment) OS=Lotus japonicus E-value=0; ] 
LjSGA_032104.2 220 
N/A
N/A  Top 5 Hits: [ Phenylalanine ammonia-lyase OS=Lotus japonicus E-value=2e-87; Phenylalanine ammonia-lyase (Fragment) OS=Lotus japonicus E-value=5e-85; Phenylalanine ammonia-lyase OS=Lotus japonicus E-value=1e-84; Phenylalanine ammonia-lyase OS=Trifolium pratense E-value=2e-84; Phenylalanine ammonia-lyase OS=Trifolium pratense E-value=1e-83; ] 
LjSGA_078032.1 391 
N/A
N/A  Top 5 Hits: [ Phenylalanine ammonia-lyase OS=Lotus japonicus E-value=0; Phenylalanine ammonia-lyase (Fragment) OS=Lotus japonicus E-value=0; Phenylalanine ammonia-lyase (Fragment) OS=Lotus japonicus E-value=0; Phenylalanine ammonia-lyase OS=Lotus japonicus E-value=0; Phenylalanine ammonia-lyase (Fragment) OS=Lotus japonicus E-value=0; ] 

Flavonoid core > Chalcone isomerase (CHI)
Seq ID Length Coordinates AffyProbes Description NCBI Protein Literature
chr5.CM0260.370.nc 225 
N/A
N/A  Top 5 Hits: [ Chalcone isomerase A OS=Glycine max E-value=4e-85; Chalcone isomerase OS=Glycyrrhiza uralensis E-value=4e-85; Chalcone isomerase 2 (Fragment) OS=Glycine max E-value=5e-67; Chalcone isomerase OS=Populus trichocarpa E-value=1e-57; Chalcone isomerase OS=Citrus unshiu E-value=1e-54; ]  BAC54038.1 Shimada et al.,2003
chr5.CM0260.380.nc 226 
N/A
N/A  Top 5 Hits: [ Chalcone isomerase A OS=Glycine max E-value=4e-91; Chalcone isomerase OS=Glycyrrhiza uralensis E-value=4e-91; Chalcone isomerase 2 (Fragment) OS=Glycine max E-value=5e-71; Chalcone isomerase OS=Populus trichocarpa E-value=6e-64; Chalcone isomerase OS=Ipomoea purpurea E-value=5e-62; ]  BAC53983.1 Shimada et al.,2003
chr5.CM0260.390.nc 226 
N/A
N/A  Top 5 Hits: [ Chalcone isomerase OS=Glycyrrhiza uralensis E-value=2e-84; Chalcone isomerase A OS=Glycine max E-value=2e-84; Chalcone isomerase 2 (Fragment) OS=Glycine max E-value=3e-67; Chalcone isomerase OS=Populus trichocarpa E-value=4e-58; Chalcone isomerase OS=Citrus unshiu E-value=6e-58; ] 
chr5.CM0260.400.nc 221 
N/A
N/A  Top 5 Hits: [ Chalcone isomerase OS=Populus trichocarpa E-value=4e-90; Chalcone isomerase OS=Glycine max E-value=8e-88; Chalcone isomerase protein OS=Malus hybrid cultivar E-value=3e-86; Chalcone isomerase OS=Citrus unshiu E-value=1e-83; Chalcone isomerase 1 (Fragment) OS=Glycine max E-value=3e-82; ]  BAC53984.1 Shimada et al.,2003
LjSGA_035547.1 202 
N/A
N/A  Top 5 Hits: [ Chalcone isomerase OS=Zea mays E-value=1e-42; Os07g0571600 protein OS=Oryza sativa subsp. japonica E-value=4e-40; Os02g0778500 protein OS=Oryza sativa subsp. japonica E-value=1e-19; ] 

Flavonoid core > Chalcone reductase (CHR)
Seq ID Length Coordinates AffyProbes Description NCBI Protein Literature
chr6.CM0037.1000.nc 312 
N/A
N/A  Top 5 Hits: [ Aldo-keto reductase, putative OS=Ricinus communis E-value=4e-98; Aldo/keto reductase OS=Fragaria ananassa E-value=3e-97; Putative NADPH-dependent oxidoreductase OS=Papaver somniferum E-value=2e-96; Chalcone reductase OS=Pueraria lobata E-value=2e-94; Polyketide reductase OS=Lotus japonicus E-value=3e-94; ] 
chr6.CM0037.940.nc 284 
N/A
N/A  Top 5 Hits: [ Aldo/keto reductase OS=Fragaria ananassa E-value=3e-62; Aldo-keto reductase, putative OS=Ricinus communis E-value=6e-57; Aldo-keto reductase, putative OS=Ricinus communis E-value=2e-56; Chalcone reductase OS=Pueraria lobata E-value=2e-56; Aldo-keto reductase, putative OS=Ricinus communis E-value=1e-55; ] 
chr2.CM0191.390.nc 315 
N/A
N/A  Top 5 Hits: [ Polyketide reductase OS=Lotus japonicus E-value=0; Polyketide reductase OS=Glycyrrhiza echinata E-value=0; Polyketide reductase (GGPKR2) OS=Glycyrrhiza glabra E-value=0; Polyketide reductase (GGPKR1) OS=Glycyrrhiza glabra E-value=0; Chalcone reductase OS=Medicago sativa E-value=0; ] 
chr2.CM0191.400.nc 312 
N/A
N/A  Top 5 Hits: [ Polyketide reductase OS=Lotus japonicus E-value=0; Polyketide reductase (GGPKR2) OS=Glycyrrhiza glabra E-value=0; Polyketide reductase OS=Glycyrrhiza echinata E-value=0; Polyketide reductase (GGPKR1) OS=Glycyrrhiza glabra E-value=0; Chalcone reductase OS=Medicago sativa E-value=0; ] 
chr2.CM0191.410.nc 259 
N/A
N/A  Top 5 Hits: [ Polyketide reductase OS=Lotus japonicus E-value=0; Polyketide reductase OS=Glycyrrhiza echinata E-value=0; Polyketide reductase (GGPKR2) OS=Glycyrrhiza glabra E-value=0; Polyketide reductase (GGPKR1) OS=Glycyrrhiza glabra E-value=0; Chalcone reductase OS=Pueraria lobata E-value=0; ] 
chr2.CM0191.480.nc 313 
N/A
N/A  Top 5 Hits: [ Polyketide reductase OS=Lotus japonicus E-value=0; Polyketide reductase (GGPKR2) OS=Glycyrrhiza glabra E-value=0; Polyketide reductase (GGPKR1) OS=Glycyrrhiza glabra E-value=0; Polyketide reductase OS=Glycyrrhiza echinata E-value=0; Chalcone reductase OS=Medicago sativa E-value=0; ] 
chr1.CM0215.150.nc 308 
N/A
N/A  Top 5 Hits: [ Chalcone reductase OS=Glycine max E-value=8e-87; Chalcone reductase OS=Pueraria lobata E-value=1e-80; Polyketide reductase OS=Lotus japonicus E-value=1e-79; Polyketide reductase (GGPKR2) OS=Glycyrrhiza glabra E-value=3e-76; Polyketide reductase (GGPKR1) OS=Glycyrrhiza glabra E-value=3e-76; ] 
chr5.CM0345.630.nd 241 
N/A
N/A  Top 5 Hits: [ Chalcone reductase OS=Glycine max E-value=1e-69; Chalcone reductase OS=Pueraria lobata E-value=9e-69; Polyketide reductase OS=Lotus japonicus E-value=1e-66; Polyketide reductase (GGPKR1) OS=Glycyrrhiza glabra E-value=7e-65; Polyketide reductase (GGPKR2) OS=Glycyrrhiza glabra E-value=7e-65; ] 
CM1092.70.nc 316 
N/A
N/A  Top 5 Hits: [ Chalcone reductase OS=Glycine max E-value=0; Chalcone reductase OS=Pueraria lobata E-value=0; Polyketide reductase OS=Lotus japonicus E-value=0; Polyketide reductase OS=Glycyrrhiza echinata E-value=0; Polyketide reductase (GGPKR1) OS=Glycyrrhiza glabra E-value=0; ] 
CM1092.80.nc 316 
N/A
N/A  Top 5 Hits: [ Chalcone reductase OS=Glycine max E-value=0; Chalcone reductase OS=Pueraria lobata E-value=0; Polyketide reductase OS=Lotus japonicus E-value=0; Polyketide reductase OS=Glycyrrhiza echinata E-value=0; Polyketide reductase (GGPKR1) OS=Glycyrrhiza glabra E-value=0; ] 
LjT35G18.70.nd 321 
N/A
N/A  Top 5 Hits: [ Chalcone reductase OS=Sesbania rostrata E-value=0; Aldo-keto reductase, putative OS=Ricinus communis E-value=0; Putative NADPH-dependent oxidoreductase OS=Papaver somniferum E-value=0; NADPH-dependent codeinone reductase-like protein OS=Papaver nudicaule E-value=0; Aldo-keto reductase, putative OS=Ricinus communis E-value=0; ] 
LjT35G18.80.nd 214 
N/A
N/A  Top 5 Hits: [ Chalcone reductase OS=Sesbania rostrata E-value=4e-95; Deoxymugineic acid synthase1 OS=Hordeum vulgare E-value=4e-74; Aldo-keto reductase, putative OS=Ricinus communis E-value=1e-73; Aldo-keto reductase, putative OS=Ricinus communis E-value=2e-73; Deoxymugineic acid synthase1 OS=Zea mays E-value=2e-73; ] 
LjT35G18.90.nd 318 
N/A
N/A  Top 5 Hits: [ Chalcone reductase OS=Sesbania rostrata E-value=0; Aldo-keto reductase, putative OS=Ricinus communis E-value=6e-97; Aldo-keto reductase, putative OS=Ricinus communis E-value=9e-97; Putative NADPH-dependent oxidoreductase OS=Papaver somniferum E-value=7e-94; Aldo-keto reductase, putative OS=Ricinus communis E-value=2e-93; ] 
LjT35G18.140.nd 322 
N/A
N/A  Top 5 Hits: [ Chalcone reductase OS=Sesbania rostrata E-value=0; Aldo-keto reductase, putative OS=Ricinus communis E-value=5e-92; Aldo-keto reductase, putative OS=Ricinus communis E-value=4e-91; Deoxymugineic acid synthase1 OS=Hordeum vulgare E-value=9e-90; Aldo-keto reductase, putative OS=Ricinus communis E-value=6e-89; ] 
LjSGA_074327.1 259 
N/A
N/A  Top 5 Hits: [ Chalcone reductase OS=Glycine max E-value=7e-63; Chalcone reductase OS=Pueraria lobata E-value=4e-62; Polyketide reductase OS=Lotus japonicus E-value=5e-59; Polyketide reductase (GGPKR2) OS=Glycyrrhiza glabra E-value=7e-59; Polyketide reductase (GGPKR1) OS=Glycyrrhiza glabra E-value=7e-59; ] 
LjSGA_019910.1 314 
N/A
N/A  Top 5 Hits: [ Polyketide reductase OS=Lotus japonicus E-value=0; Polyketide reductase (GGPKR1) OS=Glycyrrhiza glabra E-value=0; Polyketide reductase (GGPKR2) OS=Glycyrrhiza glabra E-value=0; Polyketide reductase OS=Glycyrrhiza echinata E-value=0; Chalcone reductase OS=Pueraria lobata E-value=0; ] 

Flavonoid core > Chalcone synthase (CHS)
Seq ID Length Coordinates AffyProbes Description NCBI Protein Literature
chr6.CM0057.60.nc 386 
N/A
N/A  Top 5 Hits: [ Chalcone synthase OS=Glycyrrhiza uralensis E-value=0; Chalcone synthase OS=Glycyrrhiza inflata E-value=0; Root-specific chalcone synthase OS=Senna alata E-value=0; Chalcone synthase OS=Cicer arietinum E-value=0; Putative chalcone synthase OS=Medicago truncatula E-value=0; ] 
chr4.CM0044.260.nd 388 
N/A
N/A  Top 5 Hits: [ Chalcone synthase OS=Clitoria ternatea E-value=0; Chalcone synthase OS=Glycine max E-value=0; Chalcone synthase CHS4 OS=Glycine max E-value=0; Chalcone synthase OS=Glycine max E-value=0; Chalcone synthase 9 OS=Glycine max E-value=0; ] 
chr2.CM0018.1250.nc 389 
N/A
N/A  Top 5 Hits: [ Chalcone synthase OS=Glycyrrhiza uralensis E-value=0; Chalcone synthase OS=Glycyrrhiza inflata E-value=0; Putative chalcone synthase OS=Medicago truncatula E-value=0; Root-specific chalcone synthase OS=Senna alata E-value=0; Chalcone synthase OS=Cicer arietinum E-value=0; ] 
chr2.CM0018.1150.nc 389 
N/A
N/A  Top 5 Hits: [ Chalcone synthase OS=Glycyrrhiza uralensis E-value=0; Chalcone synthase OS=Glycyrrhiza inflata E-value=0; Chalcone synthase OS=Cicer arietinum E-value=0; Root-specific chalcone synthase OS=Senna alata E-value=0; Putative chalcone synthase OS=Medicago truncatula E-value=0; ] 
chr2.CM0018.1140.nc 395 
N/A
N/A  Top 5 Hits: [ Chalcone synthase OS=Glycyrrhiza uralensis E-value=0; Chalcone synthase OS=Glycyrrhiza inflata E-value=0; Chalcone synthase OS=Cicer arietinum E-value=0; Putative chalcone synthase OS=Medicago truncatula E-value=0; Root-specific chalcone synthase OS=Senna alata E-value=0; ] 
chr2.CM0018.1100.nc 389 
N/A
N/A  Top 5 Hits: [ Chalcone synthase OS=Glycyrrhiza uralensis E-value=0; Chalcone synthase OS=Glycyrrhiza inflata E-value=0; Putative chalcone synthase OS=Medicago truncatula E-value=0; Chalcone synthase OS=Cicer arietinum E-value=0; Root-specific chalcone synthase OS=Senna alata E-value=0; ] 
chr2.CM0018.1080.nc 394 
N/A
N/A  Top 5 Hits: [ Chalcone synthase OS=Glycine max E-value=0; Chalcone synthase OS=Glycyrrhiza uralensis E-value=0; Chalcone synthase OS=Glycyrrhiza inflata E-value=0; Chalcone synthase OS=Cicer arietinum E-value=0; Chalcone synthase OS=Lupinus luteus E-value=0; ] 
chr2.CM0018.680.nc 389 
N/A
N/A  Top 5 Hits: [ Chalcone synthase OS=Glycyrrhiza uralensis E-value=0; Chalcone synthase OS=Glycyrrhiza inflata E-value=0; Root-specific chalcone synthase OS=Senna alata E-value=0; Chalcone synthase OS=Glycine max E-value=0; Chalcone synthase OS=Cicer arietinum E-value=0; ] 
chr2.CM0018.700.nc 394 
N/A
N/A  Top 5 Hits: [ Chalcone synthase OS=Glycyrrhiza uralensis E-value=0; Chalcone synthase OS=Glycyrrhiza inflata E-value=0; Root-specific chalcone synthase OS=Senna alata E-value=0; Putative chalcone synthase OS=Medicago truncatula E-value=0; Chalcone synthase OS=Glycine max E-value=0; ] 
chr2.CM0018.710.nc 389 
N/A
N/A  Top 5 Hits: [ Chalcone synthase OS=Glycyrrhiza uralensis E-value=0; Chalcone synthase OS=Glycyrrhiza inflata E-value=0; Root-specific chalcone synthase OS=Senna alata E-value=0; Putative chalcone synthase OS=Medicago truncatula E-value=0; Chalcone synthase OS=Cicer arietinum E-value=0; ] 
chr1.CM0284.240.nc 389 
N/A
N/A  Top 5 Hits: [ Chalcone synthase OS=Glycyrrhiza uralensis E-value=0; Chalcone synthase OS=Glycyrrhiza inflata E-value=0; Putative chalcone synthase OS=Medicago truncatula E-value=0; Root-specific chalcone synthase OS=Senna alata E-value=0; Chalcone synthase OS=Cicer arietinum E-value=0; ] 
chr1.CM0284.250.nc 389 
N/A
N/A  Top 5 Hits: [ Chalcone synthase OS=Glycyrrhiza uralensis E-value=0; Chalcone synthase OS=Glycyrrhiza inflata E-value=0; Putative chalcone synthase OS=Medicago truncatula E-value=0; Chalcone synthase OS=Cicer arietinum E-value=0; Root-specific chalcone synthase OS=Senna alata E-value=0; ] 
chr3.CM0590.670.nd 389 
N/A
N/A  Top 5 Hits: [ Chalcone synthase OS=Glycyrrhiza uralensis E-value=0; Chalcone synthase OS=Glycyrrhiza inflata E-value=0; Putative chalcone synthase OS=Medicago truncatula E-value=0; Chalcone synthase OS=Glycine max E-value=0; Chalcone synthase OS=Cicer arietinum E-value=0; ] 
chr3.CM0590.740.nc 389 
N/A
N/A  Top 5 Hits: [ Chalcone synthase OS=Glycyrrhiza uralensis E-value=0; Chalcone synthase OS=Glycyrrhiza inflata E-value=0; Putative chalcone synthase OS=Medicago truncatula E-value=0; Chalcone synthase OS=Glycine max E-value=0; Chalcone synthase OS=Cicer arietinum E-value=0; ] 
chr1.CM0591.370.nd 328 
N/A
N/A  Top 5 Hits: [ Chalcone synthase OS=Glycyrrhiza uralensis E-value=0; Root-specific chalcone synthase OS=Senna alata E-value=0; Chalcone synthase OS=Cicer arietinum E-value=0; Chalcone synthase OS=Glycyrrhiza inflata E-value=0; Putative chalcone synthase OS=Medicago truncatula E-value=0; ] 
chr1.CM0591.390.nd 328 
N/A
N/A  Top 5 Hits: [ Chalcone synthase OS=Glycine max E-value=0; Chalcone synthase OS=Lupinus luteus E-value=0; Chalcone synthase OS=Glycyrrhiza uralensis E-value=0; Chalcone synthase OS=Cicer arietinum E-value=0; Chalcone synthase OS=Glycyrrhiza inflata E-value=0; ] 
chr1.CM0593.380.nc 391 
N/A
N/A  Top 5 Hits: [ Chalcone synthase OS=Populus alba E-value=0; Chalcone synthase OS=Citrus sinensis E-value=0; Chalcone synthase OS=Citrus maxima E-value=0; Chalcone synthase OS=Vitis vinifera E-value=0; Chalcone synthase OS=Citrus unshiu E-value=0; ] 

Flavonols, anthocyanidins > 2-Oxoglutarate-dependent dioxygenase (2Og)
Seq ID Length Coordinates AffyProbes Description NCBI Protein Literature
chr2.CM0124.190.nd 356 
N/A
N/A  Top 5 Hits: [ Flavonol synthase/flavanone 3-hydroxylase, putative OS=Ricinus communis E-value=0; Flavonol synthase/flavanone 3-hydroxylase, putative OS=Ricinus communis E-value=0; Leucoanthocyanidin dioxygenase, putative OS=Ricinus communis E-value=0; Flavonol synthase/flavanone 3-hydroxylase, putative OS=Ricinus communis E-value=0; Flavonol synthase/flavanone 3-hydroxylase, putative OS=Ricinus communis E-value=0; ] 
chr2.CM0124.220.nd 380 
N/A
N/A  Top 5 Hits: [ Flavonol synthase/flavanone 3-hydroxylase, putative OS=Ricinus communis E-value=0; Flavonol synthase/flavanone 3-hydroxylase, putative OS=Ricinus communis E-value=0; Leucoanthocyanidin dioxygenase, putative OS=Ricinus communis E-value=0; Flavonol synthase/flavanone 3-hydroxylase, putative OS=Ricinus communis E-value=0; Flavonol synthase/flavanone 3-hydroxylase, putative OS=Ricinus communis E-value=0; ] 
chr2.CM0124.230.nd 354 
N/A
N/A  Top 5 Hits: [ Flavonol synthase/flavanone 3-hydroxylase, putative OS=Ricinus communis E-value=0; Flavonol synthase/flavanone 3-hydroxylase, putative OS=Ricinus communis E-value=0; Leucoanthocyanidin dioxygenase, putative OS=Ricinus communis E-value=0; Flavonol synthase/flavanone 3-hydroxylase, putative OS=Ricinus communis E-value=0; Flavonol synthase/flavanone 3-hydroxylase, putative OS=Ricinus communis E-value=0; ] 
chr2.CM0124.280.nd 356 
N/A
N/A  Top 5 Hits: [ Flavonol synthase/flavanone 3-hydroxylase, putative OS=Ricinus communis E-value=0; Flavonol synthase/flavanone 3-hydroxylase, putative OS=Ricinus communis E-value=0; Leucoanthocyanidin dioxygenase, putative OS=Ricinus communis E-value=0; Flavonol synthase/flavanone 3-hydroxylase, putative OS=Ricinus communis E-value=0; Flavonol synthase/flavanone 3-hydroxylase, putative OS=Ricinus communis E-value=0; ] 
chr2.CM0124.330.nd 415 
N/A
N/A  Top 5 Hits: [ Flavonol synthase/flavanone 3-hydroxylase, putative OS=Ricinus communis E-value=0; Flavonol synthase/flavanone 3-hydroxylase, putative OS=Ricinus communis E-value=0; Leucoanthocyanidin dioxygenase, putative OS=Ricinus communis E-value=0; Flavonol synthase/flavanone 3-hydroxylase, putative OS=Ricinus communis E-value=0; Flavonol synthase/flavanone 3-hydroxylase, putative OS=Ricinus communis E-value=0; ] 
chr2.CM0124.340.nd 338 
N/A
N/A  Top 5 Hits: [ Flavonol synthase/flavanone 3-hydroxylase, putative OS=Ricinus communis E-value=1e-90; Leucoanthocyanidin dioxygenase, putative OS=Ricinus communis E-value=2e-90; SRG1 like protein OS=Arabidopsis thaliana E-value=2e-88; Very similar to SRG1 OS=Arabidopsis thaliana E-value=2e-88; Flavonol synthase/flavanone 3-hydroxylase, putative OS=Ricinus communis E-value=2e-87; ] 
chr2.CM0124.350.nd 359 
N/A
N/A  Top 5 Hits: [ Flavonol synthase/flavanone 3-hydroxylase, putative OS=Ricinus communis E-value=0; Flavonol synthase/flavanone 3-hydroxylase, putative OS=Ricinus communis E-value=0; SRG1 like protein OS=Arabidopsis thaliana E-value=0; Flavonol synthase/flavanone 3-hydroxylase, putative OS=Ricinus communis E-value=0; SRG1-like protein OS=Arabidopsis thaliana E-value=0; ] 
chr4.CM0387.320.nc 353 
N/A
N/A  Top 5 Hits: [ Flavonol synthase/flavanone 3-hydroxylase, putative OS=Ricinus communis E-value=0; Flavonol synthase/flavanone 3-hydroxylase, putative OS=Ricinus communis E-value=0; Leucoanthocyanidin dioxygenase, putative OS=Ricinus communis E-value=0; Flavonol synthase/flavanone 3-hydroxylase, putative OS=Ricinus communis E-value=0; Flavonol synthase/flavanone 3-hydroxylase, putative OS=Ricinus communis E-value=0; ] 
chr4.CM0387.330.nc 355 
N/A
N/A  Top 5 Hits: [ Flavonol synthase/flavanone 3-hydroxylase, putative OS=Ricinus communis E-value=0; Flavonol synthase/flavanone 3-hydroxylase, putative OS=Ricinus communis E-value=0; Leucoanthocyanidin dioxygenase, putative OS=Ricinus communis E-value=0; ] 
chr4.CM0387.340.nc 355 
N/A
N/A  Top 5 Hits: [ Flavonol synthase/flavanone 3-hydroxylase, putative OS=Ricinus communis E-value=0; Flavonol synthase/flavanone 3-hydroxylase, putative OS=Ricinus communis E-value=0; Leucoanthocyanidin dioxygenase, putative OS=Ricinus communis E-value=0; ] 
LjSGA_004032.2 314 
N/A
N/A  Top 5 Hits: [ Flavonol synthase/flavanone 3-hydroxylase, putative OS=Ricinus communis E-value=2e-57; Flavonol synthase/flavanone 3-hydroxylase OS=Zea mays E-value=3e-56; Flavonol synthase/flavanone 3-hydroxylase, putative OS=Ricinus communis E-value=1e-55; Flavonol synthase/flavanone 3-hydroxylase, putative OS=Ricinus communis E-value=2e-52; Genomic DNA, chromosome 3, P1 clone:MHC9 OS=Arabidopsis thaliana E-value=4e-52; ] 
LjSGA_005709.1 367 
N/A
N/A  Top 5 Hits: [ Os01g0935400 protein OS=Oryza sativa subsp. japonica E-value=2e-75; Genomic DNA, chromosome 3, P1 clone:MHC9 OS=Arabidopsis thaliana E-value=8e-75; Flavonol synthase/flavanone 3-hydroxylase OS=Zea mays E-value=1e-74; Flavonol synthase/flavanone 3-hydroxylase, putative OS=Ricinus communis E-value=3e-74; Flavonol synthase/flavanone 3-hydroxylase, putative OS=Ricinus communis E-value=2e-68; ] 
LjSGA_033358.1 342 
N/A
N/A  Top 5 Hits: [ Leucoanthocyanidin dioxygenase, putative OS=Ricinus communis E-value=0; Flavonol synthase/flavanone 3-hydroxylase, putative OS=Ricinus communis E-value=0; Flavonol synthase/flavanone 3-hydroxylase, putative OS=Ricinus communis E-value=0; ] 
LjT41N19.170.nd 358 
N/A
N/A  Top 5 Hits: [ Flavonol synthase/flavanone 3-hydroxylase, putative OS=Ricinus communis E-value=0; Leucoanthocyanidin dioxygenase, putative OS=Ricinus communis E-value=0; Flavonol synthase/flavanone 3-hydroxylase, putative OS=Ricinus communis E-value=0; Flavonol synthase/flavanone 3-hydroxylase, putative OS=Ricinus communis E-value=0; Flavonol synthase/flavanone 3-hydroxylase, putative OS=Ricinus communis E-value=0; ] 
LjSGA_025931.2 265 
N/A
N/A  Top 5 Hits: [ Flavanone-3-hydroxylase OS=Dimocarpus longan E-value=0; Gibberellin 20-oxidase 1 OS=Gossypium hirsutum E-value=0; Flavonoid 3-hydroxylase OS=Epimedium sagittatum E-value=0; Naringenin 2-oxoglutarate 3-dioxygenase OS=Clitoria ternatea E-value=0; Flavanone-3-hydroxylase OS=Rubus occidentalis E-value=0; ] 
LjSGA_018608.1 286 
N/A
N/A  Top 5 Hits: [ Leucoanthocyanidin dioxygenase, putative OS=Ricinus communis E-value=3e-91; Strong similarity to naringenin 3-dioxygenase OS=Arabidopsis thaliana E-value=6e-82; Os06g0162500 protein OS=Oryza sativa subsp. japonica E-value=4e-78; Flavonol synthase/flavanone 3-hydroxylase OS=Zea mays E-value=2e-77; Naringenin 3-dioxygenase like protein OS=Brassica napus E-value=6e-59; ] 
chr1.CM0163.10.nc 335 
N/A
N/A  Top 5 Hits: [ 1-aminocyclopropane-1-carboxylate oxidase, putative OS=Ricinus communis E-value=6e-90; F3H-like protein OS=Saussurea medusa E-value=3e-73; 1-aminocyclopropane-1-carboxylate oxidase, putative OS=Ricinus communis E-value=6e-66; Flavanone 3-hydroxylase-like protein OS=Arabidopsis thaliana E-value=7e-66; Os03g0122300 protein OS=Oryza sativa subsp. japonica E-value=4e-65; ] 
chr4.CM0219.250.nc 360 
N/A
N/A  Top 5 Hits: [ Flavonol synthase/flavanone 3-hydroxylase, putative OS=Ricinus communis E-value=0; Ethylene-forming-enzyme-like dioxygenase OS=Prunus armeniaca E-value=1e-91; Similar to ethylene-forming-enzyme-like dioxygenase OS=Arabidopsis thaliana E-value=3e-85; Putative ethylene-forming dioxygenase OS=Arabidopsis thaliana E-value=5e-84; Ethylene-forming-enzyme-like dioxygenase-like protein OS=Arabidopsis thaliana E-value=1e-83; ] 
chr4.CM0219.270.nc 345 
N/A
N/A  Top 5 Hits: [ Flavonol synthase/flavanone 3-hydroxylase, putative OS=Ricinus communis E-value=0; Ethylene-forming-enzyme-like dioxygenase OS=Prunus armeniaca E-value=3e-94; Similar to ethylene-forming-enzyme-like dioxygenase OS=Arabidopsis thaliana E-value=1e-89; Ethylene-forming-enzyme-like dioxygenase-like protein OS=Arabidopsis thaliana E-value=9e-86; Putative ethylene-forming dioxygenase OS=Arabidopsis thaliana E-value=9e-86; ] 
chr4.LjT16L01.240.nd 327 
N/A
N/A  Top 5 Hits: [ Flavonol synthase/flavanone 3-hydroxylase, putative OS=Ricinus communis E-value=3e-95; Ethylene-forming-enzyme-like dioxygenase OS=Prunus armeniaca E-value=3e-78; Ethylene-forming-enzyme-like dioxygenase-like protein OS=Arabidopsis thaliana E-value=2e-75; Putative ethylene-forming dioxygenase OS=Arabidopsis thaliana E-value=8e-75; Similar to ethylene-forming-enzyme-like dioxygenase OS=Arabidopsis thaliana E-value=1e-74; ] 
chr1.CM0039.120.nd 352 
N/A
N/A  Subfamily: ANS; putative; Top 5 Hits: [ Leucoanthocyanidin dioxygenase, putative OS=Ricinus communis E-value=7e-95; Flavonol synthase/flavanone 3-hydroxylase, putative OS=Ricinus communis E-value=1e-88; Flavonol synthase/flavanone 3-hydroxylase, putative OS=Ricinus communis E-value=3e-79; Os08g0480200 protein OS=Oryza sativa subsp. japonica E-value=4e-64; H0303A11-B0406H05.3 protein OS=Oryza sativa E-value=1e-59; ] 
chr1.CM0145.330.nd 340 
N/A
N/A  Subfamily: ANS; putative; Top 5 Hits: [ Flavonol synthase/flavanone 3-hydroxylase, putative OS=Ricinus communis E-value=0; Leucoanthocyanidin dioxygenase, putative OS=Ricinus communis E-value=0; Flavonol synthase/flavanone 3-hydroxylase, putative OS=Ricinus communis E-value=0; Os08g0480200 protein OS=Oryza sativa subsp. japonica E-value=4e-79; Desacetoxyvindoline 4-hydroxylase, putative OS=Ricinus communis E-value=9e-70; ] 
chr2.CM0304.350.nc 355 
N/A
N/A  Subfamily: ANS; putative; Top 5 Hits: [ Anthocyanidin synthase OS=Medicago truncatula E-value=0; Anthocyanidin synthase 2 OS=Glycine max E-value=0; Anthocyanidin synthase OS=Populus trichocarpa E-value=0; Anthocyanidin synthase OS=Glycine max E-value=0; Anthocyanidin synthase OS=Dimocarpus longan E-value=0; ] 
LjT38L02.200.nd 356 
N/A
N/A  Subfamily: ANS; putative; Top 5 Hits: [ Leucoanthocyanidin dioxygenase, putative OS=Ricinus communis E-value=0; Flavonol synthase/flavanone 3-hydroxylase, putative OS=Ricinus communis E-value=0; Flavonol synthase/flavanone 3-hydroxylase, putative OS=Ricinus communis E-value=0; Os08g0480200 protein OS=Oryza sativa subsp. japonica E-value=1e-74; Desacetoxyvindoline 4-hydroxylase, putative OS=Ricinus communis E-value=1e-60; ] 
chr4.CM0119.240.nc 366 
N/A
N/A  Subfamily: F3betaH; putative; Top 5 Hits: [ Naringenin 2-oxoglutarate 3-dioxygenase OS=Clitoria ternatea E-value=0; Flavanone-3-hydroxylase OS=Dimocarpus longan E-value=0; Flavanone 3-hydroxylase OS=Glycine max E-value=0; Flavanone 3-hydroxylase OS=Glycine soja E-value=0; Flavanone 3-hydroxylase OS=Glycine max E-value=0; ] 

Flavonols, anthocyanidins > Dihydroflavonol reductase (DFR)
Seq ID Length Coordinates AffyProbes Description NCBI Protein Literature
chr5.CM0077.690.nc 336 
N/A
N/A  Top 5 Hits: [ Dihydroflavonol reductase OS=Lotus corniculatus E-value=0; Dihydroflavonol 4-reductase OS=Lotus japonicus E-value=0; Dihydroflavanol reductase 3 OS=Lotus corniculatus E-value=0; Dihydroflavonol 4-reductase OS=Lotus japonicus E-value=0; Dihydroflavonol-4-reductase DFR1 OS=Glycine max E-value=0; ]  BAE19949.1 Shimada et al.,2005
chr5.CM0077.750.nc 340 
N/A
N/A  Top 5 Hits: [ Dihydroflavonol 4-reductase OS=Lotus japonicus E-value=0; Dihydroflavonol reductase OS=Lotus corniculatus E-value=0; Dihydroflavonol 4-reductase OS=Lotus japonicus E-value=0; Dihydroflavanol reductase 3 OS=Lotus corniculatus E-value=0; Dihydroflavonol 4-reductase OS=Lotus japonicus E-value=0; ] 
chr5.CM0077.760.nc 340 
N/A
N/A  Top 5 Hits: [ Dihydroflavonol 4-reductase OS=Lotus japonicus E-value=0; Dihydroflavonol reductase OS=Lotus corniculatus E-value=0; Dihydroflavonol 4-reductase OS=Lotus japonicus E-value=0; Dihydroflavanol reductase 3 OS=Lotus corniculatus E-value=0; Dihydroflavonol 4-reductase OS=Lotus japonicus E-value=0; ]  BAE19950.1 Shimada et al.,2005
chr5.CM0077.780.nc 340 
N/A
N/A  Top 5 Hits: [ Dihydroflavonol 4-reductase OS=Lotus japonicus E-value=0; Dihydroflavonol 4-reductase OS=Lotus japonicus E-value=0; Dihydroflavonol reductase OS=Lotus corniculatus E-value=0; Dihydroflavonol 4-reductase OS=Lotus japonicus E-value=0; Dihydroflavanol reductase 3 OS=Lotus corniculatus E-value=0; ] 
chr5.CM0077.790.nc 340 
N/A
N/A  Top 5 Hits: [ Dihydroflavonol 4-reductase OS=Lotus japonicus E-value=0; Dihydroflavonol-4-reductase 2 OS=Glycine max E-value=0; Dihydroflavonal-4-reductase 2 OS=Medicago truncatula E-value=0; Dihydroflavonol reductase OS=Lotus corniculatus E-value=0; Dihydroflavonol 4-reductase OS=Lotus japonicus E-value=0; ]  BAE19953.1 Shimada et al.,2005
chr3.CM0396.200.nc 387 
N/A
N/A  Top 5 Hits: [ T23G18.6 OS=Arabidopsis thaliana E-value=0; Putative dTDP-glucose 4-6-dehydratase OS=Arabidopsis thaliana E-value=0; Putative dTDP-glucose 4-6-dehydratase OS=Arabidopsis thaliana E-value=0; Similar to dihydroflavonol reductase OS=Arabidopsis thaliana E-value=0; UDP-apiose/xylose synthase OS=Solanum tuberosum E-value=0; ] 
chr2.CM0903.150.nd 319 
N/A
N/A  May belong to CCR,DFR families; Top 5 Hits: [ Cinnamoyl-CoA reductase OS=Jatropha curcas E-value=0; Cinnamoyl-CoA reductase, putative OS=Ricinus communis E-value=0; Putative reductase; 61412-62628 OS=Arabidopsis thaliana E-value=0; Dihydroflavonol 4-reductase, putative OS=Arabidopsis thaliana E-value=0; Os01g0127500 protein OS=Oryza sativa subsp. japonica E-value=0; ] 
LjT25G12.140.nc 336 
N/A
N/A  May belong to CCR,IFR,DFR families; Top 5 Hits: [ Cinnamoyl-CoA reductase, putative OS=Ricinus communis E-value=3e-96; Cinnamoyl-CoA reductase, putative OS=Ricinus communis E-value=4e-84; Putative flavonol reductase OS=Arabidopsis thaliana E-value=3e-83; 2'-hydroxy isoflavone/dihydroflavonol reductase homolog (Fragment) OS=Glycine max E-value=3e-81; Vestitone reductase OS=Glycine max E-value=1e-78; ] 
LjSGA_029773.1 222 
N/A
N/A  Top 5 Hits: [ UDP-D-apiose/UDP-D-xylose synthase OS=Nicotiana benthamiana E-value=2e-52; Putative dihydroflavonol reductase OS=Ipomoea trifida E-value=5e-52; Similar to dihydroflavonol reductase OS=Arabidopsis thaliana E-value=9e-52; T23G18.6 OS=Arabidopsis thaliana E-value=1e-51; Putative dTDP-glucose 4-6-dehydratase OS=Arabidopsis thaliana E-value=1e-51; ] 
LjSGA_012294.1 333 
N/A
N/A  Top 5 Hits: [ Dihydroflavonal-4-reductase, putative OS=Ricinus communis E-value=0; Dihydroflavonol-4-reductase OS=Zea mays E-value=0; Uncharacterized protein At4g33360.2 OS=Arabidopsis thaliana E-value=0; Putative dihydroflavonal-4-reductase OS=Oryza sativa E-value=0; Os03g0184550 protein OS=Oryza sativa subsp. japonica E-value=0; ] 

Flavonols, anthocyanidins > Flavonoid 3',5'-hydroxylase (F3'5'H)
Seq ID Length Coordinates AffyProbes Description NCBI Protein Literature
chr6.LjT34E09.40.nc 513 
N/A
N/A  Top 5 Hits: [ Flavonoid 3'5' hydroxylase OS=Glycine max E-value=0; Flavonoid 3', 5'-hydroxylase OS=Glycine max E-value=0; Flavonoid 3',5'-hydroxylase OS=Clitoria ternatea E-value=0; Flavonoid 3',5'-hdyroxylase (Fragment) OS=Clitoria ternatea E-value=0; Flavonoid 3',5'-hydroxylase OS=Cyclamen persicum E-value=0; ] 

Flavonols, anthocyanidins > Flavonoid 3'-hydroxylase (F3'H)
Seq ID Length Coordinates AffyProbes Description NCBI Protein Literature
chr4.CM0087.60.nd 546 
N/A
N/A  Top 5 Hits: [ Putative flavonoid 3'-hydroxylase OS=Trifolium pratense E-value=0; Flavonoid 3'-hydroxylase OS=Glycine max E-value=0; Flavonoid 3'-hydroxylase OS=Glycine max E-value=0; Flavonoid 3' hydroxylase OS=Malus domestica E-value=0; Flavonoid 3' hydroxylase IIa OS=Malus domestica E-value=0; ] 
chr4.CM0429.360.nc 512 
N/A
N/A  Top 5 Hits: [ Flavonoid 3'-hydroxylase OS=Glycine max E-value=0; Flavonoid 3'-hydroxylase OS=Glycine max E-value=0; Putative flavonoid 3'-hydroxylase OS=Trifolium pratense E-value=0; Flavonoid 3' hydroxylase OS=Malus domestica E-value=0; Flavonoid 3'-hydroxylase OS=Populus trichocarpa E-value=0; ] 

Isoflavonoid > Isoflavone 2'-hydroxylase (I2'H)
Seq ID Length Coordinates AffyProbes Description NCBI Protein Literature
chr4.CM0256.420.nc 499 
N/A
N/A  Top 5 Hits: [ Cytochrome P450 OS=Lotus japonicus E-value=0; Cytochrome P450 OS=Glycyrrhiza echinata Ge-31 E-value=0; Isoflavone 2'-hydroxylase OS=Medicago truncatula E-value=0; Cytochrome P450 monooxygenase OS=Cicer arietinum E-value=0; Cytochrome P450 OS=Cicer arietinum E-value=0; ]  BAA93634.1 Shimada et al., 2000

Isoflavonoid > Isoflavone reductase (IFR)
Seq ID Length Coordinates AffyProbes Description NCBI Protein Literature
chr3.CM0216.20.nd 289 
N/A
N/A  Top 5 Hits: [ Pterocarpan reductase OS=Lotus japonicus E-value=0; Pterocarpan reductase OS=Lotus japonicus E-value=0; Isoflavone reductase related protein OS=Pyrus communis E-value=5e-97; Isoflavone reductase-like protein 5 OS=Vitis vinifera E-value=7e-94; Phenylcoumaran benzylic ether reductase 3 OS=Populus trichocarpa E-value=2e-93; ] 
chr3.CM0216.30.nd 336 
N/A
N/A  Top 5 Hits: [ Phenylcoumaran benzylic ether reductase-like protein OS=Populus trichocarpa E-value=0; Isoflavone reductase, putative OS=Ricinus communis E-value=0; Isoflavone reductase-like protein OS=Arabidopsis thaliana E-value=0; Isoflavone reductase OS=Zea mays E-value=2e-95; Os02g0705000 protein OS=Oryza sativa subsp. japonica E-value=1e-87; ] 
chr3.CM0216.40.nd 324 
N/A
N/A  Top 5 Hits: [ Pterocarpan reductase OS=Lotus japonicus E-value=0; Pterocarpan reductase OS=Lotus japonicus E-value=0; Isoflavone reductase related protein OS=Pyrus communis E-value=0; Phenylcoumaran benzylic ether reductase 3 OS=Populus trichocarpa E-value=0; Isoflavone reductase-like protein 6 OS=Vitis vinifera E-value=0; ] 
chr3.CM0216.50.nd 309 
N/A
N/A  Top 5 Hits: [ Pterocarpan reductase OS=Lotus japonicus E-value=0; Isoflavone reductase related protein OS=Pyrus communis E-value=0; Isoflavone reductase homolog 2 OS=Glycine max E-value=0; Phenylcoumaran benzylic ether reductase 3 OS=Populus trichocarpa E-value=0; Isoflavone reductase-like protein 6 OS=Vitis vinifera E-value=0; ] 
chr2.CM0249.1110.nc 308 
N/A
N/A  Top 5 Hits: [ Isoflavone reductase homolog 1 OS=Glycine max E-value=0; Isoflavone reductase-like protein 6 OS=Vitis vinifera E-value=0; Phenylcoumaran benzylic ether reductase homolog Fi1 OS=Forsythia intermedia E-value=0; Phenylcoumaran benzylic ether reductase homolog Fi2 OS=Forsythia intermedia E-value=0; Isoflavone reductase-like protein 5 OS=Vitis vinifera E-value=0; ] 
chr2.CM0249.1080.nc 307 
N/A
N/A  Top 5 Hits: [ Isoflavone reductase homolog OS=Lotus japonicus E-value=0; Isoflavone reductase OS=Medicago truncatula E-value=0; NADPH:isoflavone reductase OS=Glycine max E-value=0; Isoflavone reductase-like protein 6 OS=Vitis vinifera E-value=0; Isoflavone reductase homolog 1 OS=Glycine max E-value=0; ] 
chr2.CM0249.1070.nc 307 
N/A
N/A  Top 5 Hits: [ Isoflavone reductase homolog OS=Lotus japonicus E-value=0; Isoflavone reductase OS=Medicago truncatula E-value=0; NADPH:isoflavone reductase OS=Glycine max E-value=0; Isoflavone reductase homolog 1 OS=Glycine max E-value=0; Isoflavone reductase-like protein 6 OS=Vitis vinifera E-value=0; ] 
LjT25G12.140.nc 336 
N/A
N/A  May belong to CCR,IFR,DFR families; Top 5 Hits: [ Cinnamoyl-CoA reductase, putative OS=Ricinus communis E-value=3e-96; Cinnamoyl-CoA reductase, putative OS=Ricinus communis E-value=4e-84; Putative flavonol reductase OS=Arabidopsis thaliana E-value=3e-83; 2'-hydroxy isoflavone/dihydroflavonol reductase homolog (Fragment) OS=Glycine max E-value=3e-81; Vestitone reductase OS=Glycine max E-value=1e-78; ] 
LjT31J09.160.nd 312 
N/A
N/A  Top 5 Hits: [ Pinoresinol-lariciresinol reductase homolog OS=Lotus japonicus E-value=0; Pinoresinol-lariciresinol reductase homolog OS=Lotus japonicus E-value=0; Phenylcoumaran benzylic ether reductase-like protein OS=Populus trichocarpa E-value=0; Isoflavone reductase-like protein 1 OS=Vitis vinifera E-value=0; NAD dependent epimerase/dehydratase, putative OS=Ricinus communis E-value=0; ] 
LjSGA_020489.1 217 
N/A
N/A  Top 5 Hits: [ Pinoresinol-lariciresinol reductase homolog OS=Lotus japonicus E-value=0; NAD dependent epimerase/dehydratase, putative OS=Ricinus communis E-value=4e-90; Phenylcoumaran benzylic ether reductase-like protein OS=Populus trichocarpa E-value=1e-89; Phenylcoumaran benzylic ether reductase-like protein OS=Populus trichocarpa E-value=3e-89; Isoflavone reductase-like protein 1 OS=Vitis vinifera E-value=2e-88; ] 

Isoflavonoid > Isoflavone synthase (IFS)
Seq ID Length Coordinates AffyProbes Description NCBI Protein Literature
chr4.CM0692.280.nc 522 
N/A
N/A  Top 5 Hits: [ 2-hydroxyisoflavanone synthase OS=Lotus japonicus E-value=0; Cytochrome P450 OS=Lotus japonicus E-value=0; Cytochrome P450 OS=Cicer arietinum E-value=0; Cytochrome P450 OS=Glycyrrhiza echinata Ge-8 E-value=0; Isoflavone synthase 1 OS=Vigna unguiculata E-value=0; ] 
chr4.CM0692.320.nc 513 
N/A
N/A  Top 5 Hits: [ Cytochrome P450 OS=Lotus japonicus E-value=0; 2-hydroxyisoflavanone synthase OS=Lotus japonicus E-value=0; Cytochrome P450 OS=Cicer arietinum E-value=0; Cytochrome P450 OS=Glycyrrhiza echinata Ge-8 E-value=0; Isoflavone synthase OS=Pisum sativum E-value=0; ] 
LjT24P23.50.nc 518 
N/A
N/A  Top 5 Hits: [ Cytochrome P450 OS=Lotus japonicus E-value=0; 2-hydroxyisoflavanone synthase OS=Lotus japonicus E-value=0; Cytochrome P450 OS=Glycyrrhiza echinata Ge-8 E-value=0; Cytochrome P450 OS=Cicer arietinum E-value=0; Isoflavone synthase OS=Pisum sativum E-value=0; ]  BAA93632.1 Shimada et al., 2000

Isoflavonoid > Isoflavone O-methyltransferase (IOMT)
Seq ID Length Coordinates AffyProbes Description NCBI Protein Literature
chr1.CM0410.160.nc 356 
N/A
N/A  Top 5 Hits: [ S-adenosyl-L-methionine: daidzein 7-0-methyltransferase OS=Glycyrrhiza echinata E-value=0; SAM dependent isoflavone 7-O-methyltransferase OS=Medicago truncatula E-value=0; IOMT 3 OS=Medicago truncatula E-value=0; O-methytransferase OS=Medicago sativa E-value=0; IOMT 2 OS=Medicago truncatula E-value=0; ] 
LjSGA_093653.2 245 
N/A
N/A  Top 5 Hits: [ S-adenosyl-L-methionine: daidzein 7-0-methyltransferase OS=Glycyrrhiza echinata E-value=8e-43; IOMT 2 OS=Medicago truncatula E-value=5e-42; IOMT 4 OS=Medicago truncatula E-value=9e-42; SAM dependent isoflavone 7-O-methyltransferase OS=Medicago truncatula E-value=1e-41; O-methytransferase OS=Medicago sativa E-value=4e-41; ] 
gi|28804596 365 
N/A
N/A  Subfamily: 4'IOMT;  BAC58013.1 Akashi et al.,2003

Lignin > Cinnamyl alcohol dehydrogenase (CAD)
Seq ID Length Coordinates AffyProbes Description NCBI Protein Literature
chr4.CM0042.1790.nd 287 
N/A
N/A  Top 5 Hits: [ Cinnamyl-alcohol dehydrogenase OS=Medicago sativa E-value=0; Cinnamyl alcohol dehydrogenase OS=Gossypium hirsutum E-value=3e-97; Cinnamyl alcohol dehydrogenase-like protein OS=Populus trichocarpa E-value=2e-95; Putative sinapyl alcohol dehydrogenase OS=Populus tremula x Populus tremuloides E-value=8e-95; Alcohol dehydrogenase, putative OS=Ricinus communis E-value=2e-92; ] 
chr6.CM0055.200.nc 355 
N/A
N/A  Top 5 Hits: [ Cinnamyl alcohol dehydrogenase OS=Elaeis guineensis var. tenera E-value=0; Alcohol dehydrogenase, putative OS=Ricinus communis E-value=0; Mannitol dehydrogenase OS=Zea mays E-value=0; Cinnamyl alcohol dehydrogenase-like protein OS=Populus trichocarpa E-value=0; Mannitol dehydrogenase OS=Zea mays E-value=0; ] 
chr2.CM0177.120.nd 363 
N/A
N/A  Top 5 Hits: [ Cinnamyl alcohol dehydrogenase-like protein OS=Populus trichocarpa E-value=0; Alcohol dehydrogenase, putative OS=Ricinus communis E-value=0; Cinnamyl alcohol dehydrogenase OS=Fragaria ananassa E-value=0; Cinnamyl alcohol dehydrogenase-like protein OS=Populus trichocarpa E-value=0; Cinnamyl alcohol dehydrogenase-like protein OS=Populus trichocarpa E-value=0; ] 
chr2.CM0177.130.nd 363 
N/A
N/A  Top 5 Hits: [ Alcohol dehydrogenase, putative OS=Ricinus communis E-value=0; Cinnamyl alcohol dehydrogenase-like protein OS=Populus trichocarpa E-value=0; Cinnamyl alcohol dehydrogenase OS=Cucumis sativus E-value=0; Cinnamyl alcohol dehydrogenase-like protein OS=Populus trichocarpa E-value=0; Alcohol dehydrogenase, putative OS=Ricinus communis E-value=0; ] 
chr5.CM0200.1180.nc 358 
N/A
N/A  Top 5 Hits: [ Cinnamyl alcohol dehydrogenase OS=Acacia auriculiformis x Acacia mangium E-value=0; Cinnamyl alcohol dehydrogenase OS=Leucaena glauca E-value=0; Cinnamyl alcohol dehydrogenase OS=Acacia auriculiformis x Acacia mangium E-value=0; Cinnamyl alcohol dehydrogenase OS=Leucaena glauca E-value=0; Cinnamyl alcohol dehydrogenase OS=Leucaena glauca E-value=0; ] 
LjT48C16.160.nd 325 
N/A
N/A  May belong to CAD,CCR families; Top 5 Hits: [ Putative cinnamyl alcohol dehydrogenase OS=Malus domestica E-value=0; Cinnamoyl CoA reductase-like protein OS=Populus trichocarpa E-value=0; Cinnamoyl CoA reductase-like protein OS=Populus trichocarpa E-value=0; Cinnamyl alcohol dehydrogenase OS=Prunus mume E-value=0; Phenylacetaldehyde reductase OS=Rosa damascena E-value=0; ] 
LjSGA_030271.1 203 
N/A
N/A  Top 5 Hits: [ Alcohol dehydrogenase, putative OS=Ricinus communis E-value=1e-77; Cinnamyl alcohol dehydrogenase-like protein OS=Populus trichocarpa E-value=2e-76; Putative cinnamyl alcohol dehydrogenase OS=Camellia sinensis E-value=1e-71; H0209A05.10 protein OS=Oryza sativa E-value=2e-66; Mannitol dehydrogenase OS=Zea mays E-value=1e-65; ] 
LjSGA_005575.1 401 
N/A
N/A  Top 5 Hits: [ Cinnamyl alcohol dehydrogenase, putative; 82967-79323 OS=Arabidopsis thaliana E-value=5e-30; ] 
LjSGA_011490.1 265 
N/A
N/A  May belong to CAD,CCR families; Top 5 Hits: [ Phenylacetaldehyde reductase OS=Rosa damascena E-value=2e-75; Cinnamoyl CoA reductase-like protein OS=Populus trichocarpa E-value=3e-75; Cinnamyl alcohol dehydrogenase OS=Prunus mume E-value=1e-74; Cinnamyl alcohol dehydrogenase OS=Eucalyptus gunnii E-value=1e-73; Putative cinnamyl alcohol dehydrogenase OS=Malus domestica E-value=1e-73; ] 
LjSGA_070619.1 238 
N/A
N/A  Top 5 Hits: [ Alcohol dehydrogenase, putative OS=Ricinus communis E-value=4e-49; Cinnamyl alcohol dehydrogenase OS=Elaeis guineensis var. tenera E-value=9e-48; Cinnamyl alcohol dehydrogenase-like protein OS=Populus trichocarpa E-value=6e-42; Mannitol dehydrogenase OS=Zea mays E-value=5e-41; Mannitol dehydrogenase OS=Zea mays E-value=7e-40; ] 

Lignin > Caffeoyl Coenzyme A 3-O-methyl-transferase (CCOMT)
Seq ID Length Coordinates AffyProbes Description NCBI Protein Literature
chr4.CM0227.500.nc 247 
N/A
N/A  Top 5 Hits: [ Caffeoyl coenzyme A 3-O-methyltransferase 1 OS=Leucaena glauca E-value=0; Caffeoyl-CoA-O-methyltransferase OS=Broussonetia papyrifera E-value=0; Caffeoyl-CoA O-methyltransferase OS=Broussonetia papyrifera E-value=0; Caffeoyl coenzyme A 3-O-methyltransferase 2 OS=Leucaena glauca E-value=0; O-methyltransferase, putative OS=Ricinus communis E-value=0; ] 
LjT04C06.120.nd 295 
N/A
N/A  Top 5 Hits: [ O-methyltransferase, putative OS=Ricinus communis E-value=3e-84; O-methyltransferase, putative OS=Ricinus communis E-value=6e-83; O-methyltransferase OS=Mesembryanthemum crystallinum E-value=1e-78; Caffeoyl-CoA O-methyltransferase OS=Ipomoea nil E-value=1e-73; Putative caffeoyl-CoA 3-O-methyltransferase OS=Capsicum annuum E-value=1e-73; ] 
LjT36L22.70.nd 314 
N/A
N/A  Top 5 Hits: [ O-methyltransferase, putative OS=Ricinus communis E-value=0; Trans-caffeoyl-coa 3-o-methyltransferase-like protein OS=Populus trichocarpa E-value=0; Os08g0154000 protein OS=Oryza sativa subsp. japonica E-value=1e-92; Caffeoyl-CoA O-methyltransferase 1 OS=Zea mays E-value=5e-92; O-methyltransferase OS=Anabaena sp. (strain PCC 7120) E-value=1e-64; ] 

Lignin > Cinnamoyl Coenzyme A reductase (CCR)
Seq ID Length Coordinates AffyProbes Description NCBI Protein Literature
chr6.CM0066.270.nc 333 
N/A
N/A  Top 5 Hits: [ Cinnamoyl-CoA reductase, putative OS=Ricinus communis E-value=0; Putative cinnamoyl-CoA reductase OS=Arabidopsis thaliana E-value=0; Os01g0978400 protein OS=Oryza sativa subsp. japonica E-value=2e-89; Cinnamoyl-CoA reductase OS=Camellia oleifera E-value=2e-88; Cinnamoyl-CoA reductase, putative OS=Ricinus communis E-value=1e-86; ] 
chr2.CM0201.100.nd 211 
N/A
N/A  Top 5 Hits: [ Cinnamoyl-CoA reductase, putative OS=Ricinus communis E-value=4e-77; Cinnamoyl CoA reductase-like protein OS=Arabidopsis thaliana E-value=1e-62; Cinnamoyl CoA reductase-like protein OS=Arabidopsis thaliana E-value=1e-62; Os01g0639200 protein OS=Oryza sativa subsp. japonica E-value=8e-54; Cinnamoyl CoA reductase-like OS=Oryza sativa subsp. japonica E-value=1e-53; ] 
chr2.CM0903.150.nd 319 
N/A
N/A  May belong to CCR,DFR families; Top 5 Hits: [ Cinnamoyl-CoA reductase OS=Jatropha curcas E-value=0; Cinnamoyl-CoA reductase, putative OS=Ricinus communis E-value=0; Putative reductase; 61412-62628 OS=Arabidopsis thaliana E-value=0; Dihydroflavonol 4-reductase, putative OS=Arabidopsis thaliana E-value=0; Os01g0127500 protein OS=Oryza sativa subsp. japonica E-value=0; ] 
LjT48C16.160.nd 325 
N/A
N/A  May belong to CAD,CCR families; Top 5 Hits: [ Putative cinnamyl alcohol dehydrogenase OS=Malus domestica E-value=0; Cinnamoyl CoA reductase-like protein OS=Populus trichocarpa E-value=0; Cinnamoyl CoA reductase-like protein OS=Populus trichocarpa E-value=0; Cinnamyl alcohol dehydrogenase OS=Prunus mume E-value=0; Phenylacetaldehyde reductase OS=Rosa damascena E-value=0; ] 
LjT45M09.100.nd 271 
N/A
N/A  Top 5 Hits: [ Cinnamoyl CoA reductase OS=Leucaena glauca E-value=0; Cinnamoyl-CoA reductase, putative OS=Ricinus communis E-value=0; Cinnamoyl CoA reductase OS=Leucaena glauca E-value=0; Cinnamoyl-CoA reductase OS=Populus trichocarpa E-value=0; Cinnamoyl CoA reductase OS=Leucaena glauca E-value=0; ] 
LjT25G12.140.nc 336 
N/A
N/A  May belong to CCR,IFR,DFR families; Top 5 Hits: [ Cinnamoyl-CoA reductase, putative OS=Ricinus communis E-value=3e-96; Cinnamoyl-CoA reductase, putative OS=Ricinus communis E-value=4e-84; Putative flavonol reductase OS=Arabidopsis thaliana E-value=3e-83; 2'-hydroxy isoflavone/dihydroflavonol reductase homolog (Fragment) OS=Glycine max E-value=3e-81; Vestitone reductase OS=Glycine max E-value=1e-78; ] 
LjSGA_011490.1 265 
N/A
N/A  May belong to CAD,CCR families; Top 5 Hits: [ Phenylacetaldehyde reductase OS=Rosa damascena E-value=2e-75; Cinnamoyl CoA reductase-like protein OS=Populus trichocarpa E-value=3e-75; Cinnamyl alcohol dehydrogenase OS=Prunus mume E-value=1e-74; Cinnamyl alcohol dehydrogenase OS=Eucalyptus gunnii E-value=1e-73; Putative cinnamyl alcohol dehydrogenase OS=Malus domestica E-value=1e-73; ] 

Lignin > Caffeic acid 3-O-methyl-transferase (COMT)
Seq ID Length Coordinates AffyProbes Description NCBI Protein Literature
chr2.CM0191.600.nc 359 
N/A
N/A  Top 5 Hits: [ Caffeic acid O-methyltransferase OS=Acacia auriculiformis x Acacia mangium E-value=0; Putative caffeic acid O-methyltransferase OS=Betula verrucosa E-value=0; Caffeic acid O-methyl transferase OS=Leucaena glauca E-value=0; Caffeic acid O-methyltransferase OS=Rosa chinensis var. spontanea E-value=0; Caffeic acid O-methyltransferase OS=Jatropha curcas E-value=0; ] 
chr3.CM0208.320.nc 355 
N/A
N/A  Top 5 Hits: [ O-methyltransferase, family 2; Dimerisation OS=Medicago truncatula E-value=0; O-methyltransferase, family 2; Dimerisation OS=Medicago truncatula E-value=0; Catechol O-methyltransferase OS=Nicotiana tabacum E-value=0; Catechol o-methyltransferase related OS=Populus trichocarpa E-value=0; Caffeic acid O-methyltransferase II OS=Nicotiana tabacum E-value=0; ] 
chr3.CM0724.190.nd 371 
N/A
N/A  Top 5 Hits: [ O-methyltransferase OS=Glycyrrhiza echinata E-value=8e-97; Caffeic acid O-methyl transferase OS=Leucaena glauca E-value=6e-80; Caffeic acid O-methyltransferase OS=Acacia auriculiformis x Acacia mangium E-value=4e-79; Catechol O-methyltransferase OS=Nicotiana tabacum I-a E-value=1e-78; Catechol O-methyltransferase OS=Thalictrum tuberosum II;Thatu;1 E-value=4e-78; ] 
chr1.LjT11G20.60.nd 371 
N/A
N/A  Top 5 Hits: [ O-methyltransferase OS=Glycyrrhiza echinata E-value=0; Caffeic acid O-methyltransferase OS=Malus domestica E-value=2e-77; O-methyltransferase, putative OS=Ricinus communis E-value=5e-77; Caffeic acid O-methyltransferase OS=Malus domestica E-value=6e-76; Caffeic acid O-methyltransferase OS=Rosa chinensis var. spontanea E-value=9e-76; ] 
LjT36E16.10.nd 365 
N/A
N/A  Top 5 Hits: [ O-methyltransferase OS=Glycyrrhiza echinata E-value=1e-63; Caffeic acid O-methyl transferase OS=Leucaena glauca E-value=4e-56; 5-hydroxyconiferaldehyde O-methyltransferase OS=Carthamus tinctorius E-value=5e-56; Caffeic acid O-methyltransferase OS=Malus domestica E-value=2e-55; Caffeic acid O-methyltransferase OS=Malus domestica E-value=9e-55; ] 
LjT36E16.130.nd 369 
N/A
N/A  Top 5 Hits: [ O-methyltransferase OS=Glycyrrhiza echinata E-value=5e-91; S-methyltransferase OS=Catharanthus roseus E-value=2e-77; Catechol O-methyltransferase OS=Nicotiana tabacum I-a E-value=3e-77; Caffeic acid 3-O-methyltransferase OS=Populus trichocarpa E-value=4e-77; O-methyltransferase OS=Populus trichocarpa x Populus deltoides E-value=1e-76; ] 
chr5.LjT08L18.180.nd 344 
N/A
N/A  Top 5 Hits: [ O-methyltransferase OS=Glycyrrhiza echinata E-value=0; Caffeic acid O-methyltransferase OS=Malus domestica E-value=7e-70; Caffeic acid O-methyltransferase OS=Malus domestica E-value=1e-69; Catechol O-methyltransferase OS=Thalictrum tuberosum II;Thatu;2 E-value=4e-69; O-methyltransferase, putative OS=Ricinus communis E-value=6e-69; ] 
LjSGA_029018.1 266 
N/A
N/A  Top 5 Hits: [ O-methyltransferase OS=Glycyrrhiza echinata E-value=1e-51; O-methyltransferase OS=Fragaria ananassa E-value=2e-38; Caffeic acid O-3-methyltransferase OS=Populus deltoides E-value=4e-38; O-methyltransferase OS=Populus trichocarpa x Populus deltoides E-value=4e-38; Caffeic acid O-methyltransferase OS=Malus domestica E-value=1e-37; ] 
LjSGA_013806.1 250 
N/A
N/A  Top 5 Hits: [ O-methyltransferase, putative OS=Ricinus communis E-value=4e-70; Caffeic acid 3-O-methyltransferase OS=Populus trichocarpa E-value=6e-68; Alkaloid o-methyltransferase related OS=Populus trichocarpa E-value=1e-67; O-methyltransferase, putative OS=Ricinus communis E-value=4e-65; Caffeic acid O-methyltransferase OS=Rosa chinensis var. spontanea E-value=8e-60; ] 
LjSGA_017175.2 235 
N/A
N/A  Top 5 Hits: [ Caffeic acid O-methyl transferase OS=Leucaena glauca E-value=0; O-methyltransferase OS=Fragaria ananassa E-value=0; Caffeic acid O-methyltransferase OS=Acacia auriculiformis x Acacia mangium E-value=0; O-methyltransferase, putative OS=Ricinus communis E-value=0; Caffeic acid O-methyltransferase OS=Rosa chinensis var. spontanea E-value=0; ] 

Lignin > Ferulic acid/coniferaldehyde/coniferyl alcohol 5-hydroxylase (F5H)
Seq ID Length Coordinates AffyProbes Description NCBI Protein Literature
chr2.CM0249.290.nd 529 
N/A
N/A  Top 5 Hits: [ Ferulate 5-hydroxylase OS=Medicago sativa E-value=0; Cytochrome P450 monooxygenase CYP84A16 OS=Glycine max E-value=0; Ferulate 5-hydroxylase OS=Medicago sativa E-value=0; Cald5H OS=Leucaena glauca E-value=0; Ferulate 5-hydroxylase OS=Camptotheca acuminata E-value=0; ] 

Lignin > Hydroxycinnamoyl Coenzyme A: shikimate hydroxycinnamoyl transferase (HCT)
Seq ID Length Coordinates AffyProbes Description NCBI Protein Literature
chr1.CM0063.200.nc 435 
N/A
N/A  Top 5 Hits: [ Taxadien-5-alpha-ol O-acetyltransferase, putative OS=Ricinus communis E-value=0; Hydroxycinnamoyl CoA shikimate/quinate hydroxycinnamoyltransferase-like protein OS=Populus trichocarpa E-value=0; Anthranilate N-benzoyltransferase protein, putative OS=Ricinus communis E-value=0; Hydroxycinnamoyl CoA shikimate/quinate hydroxycinnamoyltransferase-like protein (Fragment) OS=Populus trichocarpa E-value=0; Putative N-hydroxycinnamoyl/benzoyltransferase OS=Arabidopsis thaliana E-value=0; ] 
chr1.CM0371.30.nc 454 
N/A
N/A  Top 5 Hits: [ Transferase OS=Medicago truncatula E-value=0; Transferase OS=Medicago truncatula E-value=3e-97; Transferase OS=Medicago truncatula E-value=7e-95; Anthranilate N-benzoyltransferase protein, putative OS=Ricinus communis E-value=6e-85; Hydroxycinnamoyl CoA shikimate/quinate hydroxycinnamoyltransferase-like protein OS=Populus trichocarpa E-value=3e-84; ] 
chr1.CM0371.40.nc 447 
N/A
N/A  Top 5 Hits: [ Transferase OS=Medicago truncatula E-value=0; Transferase OS=Medicago truncatula E-value=0; Transferase OS=Medicago truncatula E-value=0; Anthranilate N-benzoyltransferase protein, putative OS=Ricinus communis E-value=9e-87; Hydroxycinnamoyl CoA shikimate/quinate hydroxycinnamoyltransferase-like protein OS=Populus trichocarpa E-value=1e-86; ] 
chr1.CM0371.50.nc 457 
N/A
N/A  Top 5 Hits: [ Transferase OS=Medicago truncatula E-value=0; Transferase OS=Medicago truncatula E-value=0; Transferase OS=Medicago truncatula E-value=0; Hydroxycinnamoyl CoA shikimate/quinate hydroxycinnamoyltransferase-like protein OS=Populus trichocarpa E-value=4e-80; Anthranilate N-benzoyltransferase protein, putative OS=Ricinus communis E-value=3e-79; ] 
chr1.CM0371.60.nc 464 
N/A
N/A  Top 5 Hits: [ Transferase OS=Medicago truncatula E-value=0; Transferase OS=Medicago truncatula E-value=0; Transferase OS=Medicago truncatula E-value=0; Anthranilate N-benzoyltransferase protein, putative OS=Ricinus communis E-value=3e-84; Hydroxycinnamoyl CoA shikimate/quinate hydroxycinnamoyltransferase-like protein OS=Populus trichocarpa E-value=6e-82; ] 
chr3.CM0452.240.nd 427 
N/A
N/A  Top 5 Hits: [ Putative acyltransferase OS=Clitoria ternatea E-value=0; Shikimate O-hydroxycinnamoyltransferase OS=Trifolium pratense E-value=0; Shikimate O-hydroxycinnamoyl transferase OS=Trifolium pratense E-value=0; Putative acyltransferase OS=Clitoria ternatea E-value=0; Quinate O-hydroxycinnamoyltransferase/shikimate O-hydroxycinnamoyltransferase OS=Populus trichocarpa E-value=0; ] 
chr5.CM0911.340.nd 431 
N/A
N/A  Top 5 Hits: [ Anthranilate N-benzoyltransferase protein, putative OS=Ricinus communis E-value=0; Hydroxycinnamoyl CoA shikimate/quinate hydroxycinnamoyltransferase-like protein (Fragment) OS=Populus trichocarpa E-value=0; Taxadien-5-alpha-ol O-acetyltransferase, putative OS=Ricinus communis E-value=0; Hydroxycinnamoyl CoA shikimate/quinate hydroxycinnamoyltransferase-like protein OS=Populus trichocarpa E-value=0; Putative N-hydroxycinnamoyl/benzoyltransferase OS=Arabidopsis thaliana E-value=0; ] 
chr6.LjT34E09.20.nc 450 
N/A
N/A  Top 5 Hits: [ Malate O-hydroxycinnamoyl transferase OS=Trifolium pratense E-value=0; Anthranilate N-benzoyltransferase protein, putative OS=Ricinus communis E-value=1e-98; Hydroxycinnamoyl CoA shikimate/quinate hydroxycinnamoyltransferase-like protein OS=Populus trichocarpa E-value=8e-90; Putative anthranilate N-hydroxycinnamoyl/benzoyltransferase OS=Arabidopsis thaliana E-value=2e-88; Hydroxycinnamoyl CoA shikimate/quinate hydroxycinnamoyltransferase-like protein OS=Populus trichocarpa E-value=4e-87; ] 
chr3.LjT40P18.60.nc 438 
N/A
N/A  Top 5 Hits: [ Putative acyltransferase OS=Clitoria ternatea E-value=0; Putative acyltransferase OS=Clitoria ternatea E-value=0; Shikimate O-hydroxycinnamoyltransferase OS=Trifolium pratense E-value=0; Shikimate O-hydroxycinnamoyl transferase OS=Trifolium pratense E-value=0; Quinate O-hydroxycinnamoyltransferase/shikimate O-hydroxycinnamoyltransferase OS=Populus trichocarpa E-value=0; ] 
LjSGA_030670.1 363 
N/A
N/A  Top 5 Hits: [ Malate O-hydroxycinnamoyl transferase OS=Trifolium pratense E-value=0; Hydroxycinnamoyl CoA shikimate/quinate hydroxycinnamoyltransferase OS=Populus trichocarpa E-value=2e-68; Hydroxycinnamoyl-CoA:shikimate hydroxycinnamoyltransferase OS=Pinus radiata E-value=3e-68; Hydroxycinnamoyl CoA shikimate/quinate hydroxycinnamoyltransferase-like protein OS=Populus trichocarpa E-value=3e-68; Anthranilate N-benzoyltransferase protein, putative OS=Ricinus communis E-value=2e-67; ] 
LjSGA_026792.1 463 
N/A
N/A  Top 5 Hits: [ Malate O-hydroxycinnamoyl transferase OS=Trifolium pratense E-value=0; Anthranilate N-benzoyltransferase protein, putative OS=Ricinus communis E-value=1e-88; Hydroxycinnamoyl CoA shikimate/quinate hydroxycinnamoyltransferase-like protein OS=Populus trichocarpa E-value=1e-87; Hydroxycinnamoyl CoA shikimate/quinate hydroxycinnamoyltransferase-like protein OS=Populus trichocarpa E-value=6e-85; Putative anthranilate N-hydroxycinnamoyl/benzoyltransferase OS=Arabidopsis thaliana E-value=1e-83; ] 
LjSGA_027374.1 457 
N/A
N/A  Top 5 Hits: [ Malate O-hydroxycinnamoyl transferase OS=Trifolium pratense E-value=0; Hydroxycinnamoyl CoA shikimate/quinate hydroxycinnamoyltransferase-like protein OS=Populus trichocarpa E-value=7e-88; Anthranilate N-benzoyltransferase protein, putative OS=Ricinus communis E-value=8e-88; Putative anthranilate N-hydroxycinnamoyl/benzoyltransferase OS=Arabidopsis thaliana E-value=4e-84; Hydroxycinnamoyl CoA shikimate/quinate hydroxycinnamoyltransferase-like protein OS=Populus trichocarpa E-value=9e-82; ] 
LjSGA_014979.1 515 
N/A
N/A  Top 5 Hits: [ Malate O-hydroxycinnamoyl transferase OS=Trifolium pratense E-value=0; Anthranilate N-benzoyltransferase protein, putative OS=Ricinus communis E-value=2e-82; Hydroxycinnamoyl CoA shikimate/quinate hydroxycinnamoyltransferase OS=Populus trichocarpa E-value=6e-80; Hydroxycinnamoyl CoA shikimate/quinate hydroxycinnamoyltransferase-like protein OS=Populus trichocarpa E-value=1e-79; Hydroxycinnamoyl CoA shikimate/quinate hydroxycinnamoyltransferase-like protein OS=Populus trichocarpa E-value=6e-79; ] 
LjSGA_019127.1 457 
N/A
N/A  Top 5 Hits: [ Anthranilate N-benzoyltransferase protein, putative OS=Ricinus communis E-value=0; Hydroxycinnamoyl CoA shikimate/quinate hydroxycinnamoyltransferase-like protein OS=Populus trichocarpa E-value=0; Hydroxycinnamoyl CoA shikimate/quinate hydroxycinnamoyltransferase-like protein OS=Populus trichocarpa E-value=0; Putative anthranilate N-hydroxycinnamoyl/benzoyltransferase OS=Arabidopsis thaliana E-value=0; Hydroxycinnamoyl transferase OS=Nicotiana tabacum E-value=3e-93; ] 

Lignin > Laccase (Laccase)
Seq ID Length Coordinates AffyProbes Description NCBI Protein Literature
chr4.CM0042.2140.nc 579 
N/A
N/A  Top 5 Hits: [ Laccase 110c OS=Populus trichocarpa E-value=0; Laccase, putative OS=Ricinus communis E-value=0; Laccase OS=Pinus taeda E-value=0; Laccase OS=Pinus taeda E-value=0; Laccase OS=Pinus taeda E-value=0; ] 
chr1.CM0147.290.nd 585 
N/A
N/A  Top 5 Hits: [ Laccase, putative OS=Ricinus communis E-value=0; Laccase, putative OS=Ricinus communis E-value=0; Laccase OS=Liriodendron tulipifera E-value=0; Laccase OS=Liriodendron tulipifera E-value=0; Laccase OS=Liriodendron tulipifera E-value=0; ] 
chr1.CM0147.300.nc 585 
N/A
N/A  Top 5 Hits: [ Laccase, putative OS=Ricinus communis E-value=0; Laccase, putative OS=Ricinus communis E-value=0; Laccase OS=Liriodendron tulipifera E-value=0; Laccase OS=Liriodendron tulipifera E-value=0; Laccase OS=Liriodendron tulipifera E-value=0; ] 
chr1.CM0147.320.nc 577 
N/A
N/A  Top 5 Hits: [ Laccase, putative OS=Ricinus communis E-value=0; Laccase, putative OS=Ricinus communis E-value=0; Laccase OS=Liriodendron tulipifera E-value=0; Laccase OS=Liriodendron tulipifera E-value=0; Laccase, putative OS=Ricinus communis E-value=0; ] 
chr1.CM0147.770.nc 586 
N/A
N/A  Top 5 Hits: [ Laccase, putative OS=Ricinus communis E-value=0; Laccase, putative OS=Ricinus communis E-value=0; Laccase 110c OS=Populus trichocarpa E-value=0; Laccase OS=Liriodendron tulipifera E-value=0; Laccase, putative OS=Ricinus communis E-value=0; ] 
chr2.CM0249.1210.nc 567 
N/A
N/A  Top 5 Hits: [ Laccase, putative OS=Ricinus communis E-value=0; Laccase, putative OS=Ricinus communis E-value=0; Laccase OS=Pinus taeda E-value=0; Laccase OS=Pinus taeda E-value=0; Laccase 1b OS=Populus trichocarpa E-value=0; ] 
chr2.CM0249.1200.nc 562 
N/A
N/A  Top 5 Hits: [ Laccase, putative OS=Ricinus communis E-value=0; Laccase, putative OS=Ricinus communis E-value=0; Laccase OS=Pinus taeda E-value=0; Laccase OS=Pinus taeda E-value=0; Laccase, putative OS=Ricinus communis E-value=0; ] 
chr5.CM0344.490.nd 543 
N/A
N/A  Top 5 Hits: [ Putative laccase OS=Rosa hybrid cultivar E-value=0; ] 
chr3.CM0792.230.nd 538 
N/A
N/A  Top 5 Hits: [ Laccase, putative OS=Ricinus communis E-value=0; Laccase, putative OS=Ricinus communis E-value=0; Laccase, putative OS=Ricinus communis E-value=0; ] 
chr1.LjB20I01.110.nd 594 
N/A
N/A  Top 5 Hits: [ Laccase, putative OS=Ricinus communis E-value=0; Laccase 3 OS=Populus trichocarpa E-value=0; Laccase OS=Populus trichocarpa E-value=0; Laccase OS=Populus trichocarpa E-value=0; Laccase OS=Populus trichocarpa E-value=0; ] 
LjSGA_022002.1 316 
N/A
N/A  Top 5 Hits: [ Laccase, putative OS=Ricinus communis E-value=0; Diphenol oxidase laccase OS=Glycine max E-value=0; Laccase 90c OS=Populus trichocarpa E-value=0; Laccase, putative OS=Ricinus communis E-value=0; Laccase 90a OS=Populus trichocarpa E-value=0; ] 
LjSGA_027663.1 276 
N/A
N/A  Top 5 Hits: [ Diphenol oxidase laccase OS=Glycine max E-value=0; Laccase, putative OS=Ricinus communis E-value=0; Laccase 90c OS=Populus trichocarpa E-value=0; Laccase 90a OS=Populus trichocarpa E-value=0; Laccase, putative OS=Ricinus communis E-value=0; ] 
LjSGA_028269.1 451 
N/A
N/A  Top 5 Hits: [ Putative laccase OS=Rosa hybrid cultivar E-value=0; ] 
LjSGA_030708.1 395 
N/A
N/A  Top 5 Hits: [ Laccase, putative OS=Ricinus communis E-value=0; Laccase, putative OS=Ricinus communis E-value=0; Laccase, putative OS=Ricinus communis E-value=0; Laccase 90c OS=Populus trichocarpa E-value=0; Laccase 90d (Fragment) OS=Populus trichocarpa E-value=0; ] 
LjSGA_031829.1 399 
N/A
N/A  Top 5 Hits: [ Laccase, putative OS=Ricinus communis E-value=0; Diphenol oxidase OS=Nicotiana tabacum E-value=0; Laccase 90c OS=Populus trichocarpa E-value=2e-99; Laccase 1a OS=Populus trichocarpa E-value=4e-98; Laccase, putative OS=Ricinus communis E-value=8e-98; ] 
LjSGA_052585.1 378 
N/A
N/A  Top 5 Hits: [ Putative copper ion-binding laccase OS=Pisum sativum E-value=0; Laccase, putative OS=Ricinus communis E-value=0; Laccase 110a OS=Populus trichocarpa E-value=0; Laccase OS=Solanum lycopersicum E-value=2e-99; Laccase (Fragment) OS=Aster tripolium E-value=4e-92; ] 


  © 2010 by The Samuel Roberts Noble Foundation, Inc.