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Location:  Home > Details for node SHM4
Type: Protein GRN ID: np32210 Name: SHM4
Annotation: SHM4 | serine hydroxymethyltransferase 4 [EC:2.1.2.1]
Gene Locus: AT4G13930
Gene Expression (Affy ATH1 probeset): 254740_s_at    
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 Protein modification
 Protein-protein interaction
        also include predicted relationship
 Compound-protein interaction
 TF-target gene regulation
 Small RNA-target regulation
        also include predicted relationship
 Carrier and transported molecule
 Catalytic chemical reaction
 Co-expressed gene pair
        with mutual information value >

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Relationship type:  protein modification     catalytic chemical reaction     protein-protein interaction    
compound-protein interaction     TF-target gene regulation     small RNA-target regulation    
co-expressed gene pair     carrier and transported molecule     family/complex and member
Relationship evidence:  Solid line: validated          Dashed line: predicted
Relationship direction: Arrow: positive          T shape: negative          None arrow: unknown or n/a
Hormone association: Thicker line: hormone related relationship         : hormone related Node
Node type:  Transcription factor or transcriptional regulator       Compound       Kinase
 Small regulatory RNA (miRNA & ta-siRNA)       Other nodes
No. Path
2 SHM4  --  has product (in catalytic reaction)  --  Tetrahydrofolate
3 SHM4  --  interacts with  --  UBP16
4 SHM4  --  interacts with  --  AT4G37130
5 SHM4  --  has similar expression pattern (mutual information value=1.00251) with  --  MAT3
6 SHM4  --  has similar expression pattern (mutual information value=0.829519) with  --  NRS/ER; UER1
7 SHM4  --  has product (in catalytic reaction)  --  Tetrahydrofolate  --  has product (in catalytic reaction)  --  10-Formyltetrahydrofolate
8 SHM4  --  has product (in catalytic reaction)  --  Tetrahydrofolate  --  has product (in catalytic reaction)  --  5,10-Methylenetetrahydrofolate
9 SHM4  --  has product (in catalytic reaction)  --  Tetrahydrofolate  --  has product (in catalytic reaction)  --  Dihydrofolate
10 SHM4  --  has product (in catalytic reaction)  --  Tetrahydrofolate  --  is product (in catalytic reaction) of  --  AT5G47435
11 SHM4  --  has product (in catalytic reaction)  --  Tetrahydrofolate  --  is product (in catalytic reaction) of  --  AT4G17360
12 SHM4  --  has product (in catalytic reaction)  --  Tetrahydrofolate  --  is product (in catalytic reaction) of  --  PANB2
13 SHM4  --  has product (in catalytic reaction)  --  Tetrahydrofolate  --  is product (in catalytic reaction) of  --  3-Methyl-2-oxobutanoic acid
14 SHM4  --  has product (in catalytic reaction)  --  Tetrahydrofolate  --  is product (in catalytic reaction) of  --  KPHMT1; PANB1
15 SHM4  --  has product (in catalytic reaction)  --  Tetrahydrofolate  --  is product (in catalytic reaction) of  --  pde194
16 SHM4  --  has product (in catalytic reaction)  --  Tetrahydrofolate  --  is product (in catalytic reaction) of  --  AT2G35040
17 SHM4  --  has product (in catalytic reaction)  --  Tetrahydrofolate  --  is product (in catalytic reaction) of  --  1-(5'-Phosphoribosyl)-5-amino-4-imidazolecarboxamide
18 SHM4  --  has product (in catalytic reaction)  --  Tetrahydrofolate  --  is product (in catalytic reaction) of  --  AT1G31220
19 SHM4  --  has product (in catalytic reaction)  --  Tetrahydrofolate  --  is product (in catalytic reaction) of  --  5'-Phosphoribosylglycinamide
20 SHM4  --  has product (in catalytic reaction)  --  Tetrahydrofolate  --  is product (in catalytic reaction) of  --  SHM6
21 SHM4  --  interacts with  --  UBP16  --  interacts with  --  EMB2167; ERD16; HAP4; UBQ1
22 SHM4  --  interacts with  --  UBP16  --  interacts with  --  HIPP27
23 SHM4  --  interacts with  --  UBP16  --  has product (in catalytic reaction)  --  Thiol
24 SHM4  --  interacts with  --  AT4G37130  --  interacts with  --  AT4G30100
25 SHM4  --  interacts with  --  AT4G37130  --  interacts with  --  AtPPR2; EMB2750; PPR2
26 SHM4  --  interacts with  --  AT4G37130  --  interacts with  --  AT3G10250
27 SHM4  --  interacts with  --  AT4G37130  --  interacts with  --  AT1G49700
28 SHM4  --  interacts with  --  AT4G37130  --  interacts with  --  DHS2
29 SHM4  --  interacts with  --  AT4G37130  --  interacts with  --  AtBRCC36A; BRCC36A
30 SHM4  --  interacts with  --  AT4G37130  --  interacts with  --  ATPC1
31 SHM4  --  interacts with  --  AT4G37130  --  interacts with  --  AT2G15960
32 SHM4  --  interacts with  --  AT4G37130  --  interacts with  --  ATHY2; GUN3; HY2
33 SHM4  --  interacts with  --  AT4G37130  --  interacts with  --  KNAT3
34 SHM4  --  interacts with  --  AT4G37130  --  interacts with  --  AT3G05270
35 SHM4  --  interacts with  --  AT4G37130  --  interacts with  --  AT3G54630
36 SHM4  --  interacts with  --  AT4G37130  --  interacts with  --  ATPCB; ATPERX34; PERX34; PRX34; PRXCB
37 SHM4  --  interacts with  --  AT4G37130  --  interacts with  --  AT5G56160
38 SHM4  --  interacts with  --  AT4G37130  --  interacts with  --  ACT2; DER1; ENL2; FIZ2; LSR2
39 SHM4  --  interacts with  --  AT4G37130  --  interacts with  --  ATRHM1; RHM1; ROL1
40 SHM4  --  interacts with  --  AT4G37130  --  interacts with  --  FTSH1
41 SHM4  --  interacts with  --  AT4G37130  --  interacts with  --  AT5G58510
42 SHM4  --  interacts with  --  AT4G37130  --  interacts with  --  AT4G26410
43 SHM4  --  interacts with  --  AT4G37130  --  interacts with  --  AT5G03500
44 SHM4  --  interacts with  --  AT4G37130  --  interacts with  --  AT1G21440
45 SHM4  --  interacts with  --  AT4G37130  --  interacts with  --  AT1G79160
46 SHM4  --  interacts with  --  AT4G37130  --  interacts with  --  AT3G20720
47 SHM4  --  interacts with  --  AT4G37130  --  interacts with  --  AT1G79010
48 SHM4  --  interacts with  --  AT4G37130  --  interacts with  --  ATMYB75; MYB75; PAP1; SIAA1
49 SHM4  --  interacts with  --  AT4G37130  --  interacts with  --  EMB2766
50 SHM4  --  interacts with  --  AT4G37130  --  interacts with  --  ACT7
51 SHM4  --  interacts with  --  AT4G37130  --  interacts with  --  ATVHA-C; DET3
52 SHM4  --  interacts with  --  AT4G37130  --  interacts with  --  VPS28-1
53 SHM4  --  has similar expression pattern (mutual information value=1.00251) with  --  MAT3  --  interacts with  --  GF14 CHI; GRF1
54 SHM4  --  has similar expression pattern (mutual information value=1.00251) with  --  MAT3  --  has similar expression pattern (mutual information value=1.08699) with  --  ATCIMS; ATMETS; ATMS1
55 SHM4  --  has similar expression pattern (mutual information value=1.00251) with  --  MAT3  --  has similar expression pattern (mutual information value=1.08699) with  --  ATMS2; MS2
56 SHM4  --  has similar expression pattern (mutual information value=0.829519) with  --  NRS/ER; UER1  --  has similar expression pattern (mutual information value=0.863996) with  --  AT2G24170
57 SHM4  --  has similar expression pattern (mutual information value=0.829519) with  --  NRS/ER; UER1  --  has similar expression pattern (mutual information value=0.817445) with  --  AT3G07950
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