Screen Resolution:     
Welcome to HRGRN
A Graph Search-Empowered Integrative Database of Arabidopsis Signaling Transduction, Metabolism and Gene Regulation Networks   
Location:  Home > Details for node VPS28-1
Type: Protein GRN ID: np34632 Name: VPS28-1
Annotation: VPS28-1 | vacuolar protein sorting-associated protein 28 homolog 1
Gene Locus: AT4G21560
Gene Expression (Affy ATH1 probeset): 254422_at    
Graph Customization
   
Choose color for highlight:  
Display edge: validated and predicted
Display node/edge prompt:
Layout:
 as format     
Data Filter
 Protein modification
 Protein-protein interaction
        also include predicted relationship
 Compound-protein interaction
 TF-target gene regulation
 Small RNA-target regulation
        also include predicted relationship
 Carrier and transported molecule
 Catalytic chemical reaction
 Co-expressed gene pair
        with mutual information value >

  Ignore nodes having > relationships
 
Relationship type:  protein modification     catalytic chemical reaction     protein-protein interaction    
compound-protein interaction     TF-target gene regulation     small RNA-target regulation    
co-expressed gene pair     carrier and transported molecule     family/complex and member
Relationship evidence:  Solid line: validated          Dashed line: predicted
Relationship direction: Arrow: positive          T shape: negative          None arrow: unknown or n/a
Hormone association: Thicker line: hormone related relationship         : hormone related Node
Node type:  Transcription factor or transcriptional regulator       Compound       Kinase
 Small regulatory RNA (miRNA & ta-siRNA)       Other nodes
No. Path
2 VPS28-1  --  interacts with  --  VPS37-1
3 VPS28-1  --  interacts with  --  VPS2.2
4 VPS28-1  --  interacts with  --  ELC-Like
5 VPS28-1  --  interacts with  --  ATELC; ELC
6 VPS28-1  --  interacts with  --  AT4G37130
7 VPS28-1  --  interacts with  --  AT4G32760
8 VPS28-1  --  interacts with  --  AT2G38830
9 VPS28-1  --  interacts with  --  VPS37-1  --  interacts with  --  VPS2.1
10 VPS28-1  --  interacts with  --  VPS2.2  --  interacts with  --  ATSKD1; SKD1; VPS4
11 VPS28-1  --  interacts with  --  VPS2.2  --  interacts with  --  CHMP1B; VPS46.1
12 VPS28-1  --  interacts with  --  VPS2.2  --  interacts with  --  SNF7.1
13 VPS28-1  --  interacts with  --  VPS2.2  --  interacts with  --  CHMP1A; VPS46.2
14 VPS28-1  --  interacts with  --  VPS2.2  --  interacts with  --  SNF7.2; VPS32
15 VPS28-1  --  interacts with  --  ELC-Like  --  interacts with  --  AT5G04920
16 VPS28-1  --  interacts with  --  ELC-Like  --  interacts with  --  AT1G15130
17 VPS28-1  --  interacts with  --  ATELC; ELC  --  interacts with  --  AT2G36680
18 VPS28-1  --  interacts with  --  ATELC; ELC  --  interacts with  --  EMB2167; ERD16; HAP4; UBQ1
19 VPS28-1  --  interacts with  --  ATELC; ELC  --  has similar expression pattern (mutual information value=0.81666) with  --  AT1G59910
20 VPS28-1  --  interacts with  --  ATELC; ELC  --  has similar expression pattern (mutual information value=0.868373) with  --  SCL5
21 VPS28-1  --  interacts with  --  ATELC; ELC  --  has similar expression pattern (mutual information value=0.815485) with  --  OBE1
22 VPS28-1  --  interacts with  --  ATELC; ELC  --  has similar expression pattern (mutual information value=0.817051) with  --  AT3G01430
23 VPS28-1  --  interacts with  --  ATELC; ELC  --  has similar expression pattern (mutual information value=0.831529) with  --  BZIP28
24 VPS28-1  --  interacts with  --  ATELC; ELC  --  has similar expression pattern (mutual information value=0.811929) with  --  AT5G42940
25 VPS28-1  --  interacts with  --  ATELC; ELC  --  has similar expression pattern (mutual information value=0.832693) with  --  AT5G44080
26 VPS28-1  --  interacts with  --  ATELC; ELC  --  has similar expression pattern (mutual information value=0.838427) with  --  ATEXO70B1; EXO70B1
27 VPS28-1  --  interacts with  --  AT4G37130  --  interacts with  --  AT4G30100
28 VPS28-1  --  interacts with  --  AT4G37130  --  interacts with  --  AtPPR2; EMB2750; PPR2
29 VPS28-1  --  interacts with  --  AT4G37130  --  interacts with  --  AT3G10250
30 VPS28-1  --  interacts with  --  AT4G37130  --  interacts with  --  AT1G49700
31 VPS28-1  --  interacts with  --  AT4G37130  --  interacts with  --  DHS2
32 VPS28-1  --  interacts with  --  AT4G37130  --  interacts with  --  AtBRCC36A; BRCC36A
33 VPS28-1  --  interacts with  --  AT4G37130  --  interacts with  --  ATPC1
34 VPS28-1  --  interacts with  --  AT4G37130  --  interacts with  --  AT2G15960
35 VPS28-1  --  interacts with  --  AT4G37130  --  interacts with  --  ATHY2; GUN3; HY2
36 VPS28-1  --  interacts with  --  AT4G37130  --  interacts with  --  SHM4
37 VPS28-1  --  interacts with  --  AT4G37130  --  interacts with  --  KNAT3
38 VPS28-1  --  interacts with  --  AT4G37130  --  interacts with  --  AT3G05270
39 VPS28-1  --  interacts with  --  AT4G37130  --  interacts with  --  AT3G54630
40 VPS28-1  --  interacts with  --  AT4G37130  --  interacts with  --  ATPCB; ATPERX34; PERX34; PRX34; PRXCB
41 VPS28-1  --  interacts with  --  AT4G37130  --  interacts with  --  AT5G56160
42 VPS28-1  --  interacts with  --  AT4G37130  --  interacts with  --  ACT2; DER1; ENL2; FIZ2; LSR2
43 VPS28-1  --  interacts with  --  AT4G37130  --  interacts with  --  ATRHM1; RHM1; ROL1
44 VPS28-1  --  interacts with  --  AT4G37130  --  interacts with  --  FTSH1
45 VPS28-1  --  interacts with  --  AT4G37130  --  interacts with  --  AT5G58510
46 VPS28-1  --  interacts with  --  AT4G37130  --  interacts with  --  AT4G26410
47 VPS28-1  --  interacts with  --  AT4G37130  --  interacts with  --  AT5G03500
48 VPS28-1  --  interacts with  --  AT4G37130  --  interacts with  --  AT1G21440
49 VPS28-1  --  interacts with  --  AT4G37130  --  interacts with  --  AT1G79160
50 VPS28-1  --  interacts with  --  AT4G37130  --  interacts with  --  AT3G20720
51 VPS28-1  --  interacts with  --  AT4G37130  --  interacts with  --  AT1G79010
52 VPS28-1  --  interacts with  --  AT4G37130  --  interacts with  --  ATMYB75; MYB75; PAP1; SIAA1
53 VPS28-1  --  interacts with  --  AT4G37130  --  interacts with  --  EMB2766
54 VPS28-1  --  interacts with  --  AT4G37130  --  interacts with  --  ACT7
55 VPS28-1  --  interacts with  --  AT4G37130  --  interacts with  --  ATVHA-C; DET3
56 VPS28-1  --  interacts with  --  AT4G32760  --  interacts with  --  AT5G63640
57 VPS28-1  --  interacts with  --  AT2G38830  --  interacts with  --  ATHSP23.6-MITO; HSP23.6-MITO
   Funding by the National Science Foundation    Funding by the Oklahoma Center for the Advancement of Science & Technology    Additional funding by the Samuel Roberts Noble Foundation

Copyright © The Zhao Lab

Disclaimer | Contact