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A Graph Search-Empowered Integrative Database of Arabidopsis Signaling Transduction, Metabolism and Gene Regulation Networks   
Location:  Home > Details for node AT3G12640
Type: Protein GRN ID: np29398 Name:
Annotation: RNA binding (RRM/RBD/RNP motifs) family protein [TCDB:9.A.5.1]
Gene Locus: AT3G12640
Gene Expression (Affy ATH1 probeset): 257703_at    
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 Protein modification
 Protein-protein interaction
        also include predicted relationship
 Compound-protein interaction
 TF-target gene regulation
 Small RNA-target regulation
        also include predicted relationship
 Carrier and transported molecule
 Catalytic chemical reaction
 Co-expressed gene pair
        with mutual information value >

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Relationship type:  protein modification     catalytic chemical reaction     protein-protein interaction    
compound-protein interaction     TF-target gene regulation     small RNA-target regulation    
co-expressed gene pair     carrier and transported molecule     family/complex and member
Relationship evidence:  Solid line: validated          Dashed line: predicted
Relationship direction: Arrow: positive          T shape: negative          None arrow: unknown or n/a
Hormone association: Thicker line: hormone related relationship         : hormone related Node
Node type:  Transcription factor or transcriptional regulator       Compound       Kinase
 Small regulatory RNA (miRNA & ta-siRNA)       Other nodes
No. Path
2 AT3G12640  --  is the target gene of  --  ath-miR860
3 AT3G12640  --  has similar expression pattern (mutual information value=0.837295) with  --  AT2G17410
4 AT3G12640  --  has similar expression pattern (mutual information value=1.0307) with  --  AT1G60200
5 AT3G12640  --  has similar expression pattern (mutual information value=0.824568) with  --  AT3G62080
6 AT3G12640  --  has similar expression pattern (mutual information value=0.866015) with  --  AT5G46840
7 AT3G12640  --  has similar expression pattern (mutual information value=0.845097) with  --  HOS15
8 AT3G12640  --  has similar expression pattern (mutual information value=0.905714) with  --  ELF9
9 AT3G12640  --  has similar expression pattern (mutual information value=0.938105) with  --  AT4G17620
10 AT3G12640  --  is the target gene of  --  ath-miR860  --  inhibit the expression of  --  AT1G24967
11 AT3G12640  --  has similar expression pattern (mutual information value=0.837295) with  --  AT2G17410  --  has similar expression pattern (mutual information value=0.892217) with  --  AT1G16270
12 AT3G12640  --  has similar expression pattern (mutual information value=0.837295) with  --  AT2G17410  --  has similar expression pattern (mutual information value=0.892217) with  --  AT1G79570
13 AT3G12640  --  has similar expression pattern (mutual information value=0.837295) with  --  AT2G17410  --  has similar expression pattern (mutual information value=0.825791) with  --  LFR
14 AT3G12640  --  has similar expression pattern (mutual information value=0.837295) with  --  AT2G17410  --  has similar expression pattern (mutual information value=1.01583) with  --  AT4G31880
15 AT3G12640  --  has similar expression pattern (mutual information value=0.837295) with  --  AT2G17410  --  has similar expression pattern (mutual information value=0.861632) with  --  AT5G17440
16 AT3G12640  --  has similar expression pattern (mutual information value=1.0307) with  --  AT1G60200  --  has similar expression pattern (mutual information value=0.875109) with  --  AT2G39260
17 AT3G12640  --  has similar expression pattern (mutual information value=1.0307) with  --  AT1G60200  --  has similar expression pattern (mutual information value=0.821345) with  --  AT2G46200
18 AT3G12640  --  has similar expression pattern (mutual information value=1.0307) with  --  AT1G60200  --  has similar expression pattern (mutual information value=0.963837) with  --  AtTPR; NUA
19 AT3G12640  --  has similar expression pattern (mutual information value=1.0307) with  --  AT1G60200  --  has similar expression pattern (mutual information value=1.14492) with  --  CHR5
20 AT3G12640  --  has similar expression pattern (mutual information value=1.0307) with  --  AT1G60200  --  has similar expression pattern (mutual information value=1.04373) with  --  AT1G15200
21 AT3G12640  --  has similar expression pattern (mutual information value=1.0307) with  --  AT1G60200  --  has similar expression pattern (mutual information value=0.932022) with  --  AT2G01100
22 AT3G12640  --  has similar expression pattern (mutual information value=1.0307) with  --  AT1G60200  --  has similar expression pattern (mutual information value=0.826946) with  --  AT2G47410
23 AT3G12640  --  has similar expression pattern (mutual information value=1.0307) with  --  AT1G60200  --  has similar expression pattern (mutual information value=0.818666) with  --  ASHH1; ASHH1; SDG26
24 AT3G12640  --  has similar expression pattern (mutual information value=1.0307) with  --  AT1G60200  --  has similar expression pattern (mutual information value=1.24238) with  --  CHR11
25 AT3G12640  --  has similar expression pattern (mutual information value=1.0307) with  --  AT1G60200  --  has similar expression pattern (mutual information value=0.811798) with  --  GTE01; GTE1; IMB1
26 AT3G12640  --  has similar expression pattern (mutual information value=1.0307) with  --  AT1G60200  --  has similar expression pattern (mutual information value=0.936743) with  --  ATPRP40B; PRP40B
27 AT3G12640  --  has similar expression pattern (mutual information value=1.0307) with  --  AT1G60200  --  has similar expression pattern (mutual information value=0.849291) with  --  AT3G19630
28 AT3G12640  --  has similar expression pattern (mutual information value=1.0307) with  --  AT1G60200  --  has similar expression pattern (mutual information value=0.869287) with  --  AT5G28330
29 AT3G12640  --  has similar expression pattern (mutual information value=1.0307) with  --  AT1G60200  --  has similar expression pattern (mutual information value=0.869287) with  --  AT5G28390
30 AT3G12640  --  has similar expression pattern (mutual information value=1.0307) with  --  AT1G60200  --  has similar expression pattern (mutual information value=0.869287) with  --  AT3G52660
31 AT3G12640  --  has similar expression pattern (mutual information value=1.0307) with  --  AT1G60200  --  has similar expression pattern (mutual information value=0.993002) with  --  ATSRL1
32 AT3G12640  --  has similar expression pattern (mutual information value=1.0307) with  --  AT1G60200  --  has similar expression pattern (mutual information value=0.847991) with  --  ATXR7; SDG25
33 AT3G12640  --  has similar expression pattern (mutual information value=1.0307) with  --  AT1G60200  --  has similar expression pattern (mutual information value=1.02346) with  --  At-RS41; ATRSP41; RS41
34 AT3G12640  --  has similar expression pattern (mutual information value=1.0307) with  --  AT1G60200  --  has similar expression pattern (mutual information value=0.838533) with  --  AT5G53440
35 AT3G12640  --  has similar expression pattern (mutual information value=1.0307) with  --  AT1G60200  --  has similar expression pattern (mutual information value=0.83947) with  --  MGO1; TOP1; TOP1ALPHA
36 AT3G12640  --  has similar expression pattern (mutual information value=1.0307) with  --  AT1G60200  --  has similar expression pattern (mutual information value=0.816066) with  --  ATPUB49; PUB49
37 AT3G12640  --  has similar expression pattern (mutual information value=0.824568) with  --  AT3G62080  --  has similar expression pattern (mutual information value=1.05947) with  --  AT2G02570
38 AT3G12640  --  has similar expression pattern (mutual information value=0.824568) with  --  AT3G62080  --  has similar expression pattern (mutual information value=0.835333) with  --  AT1G60900
39 AT3G12640  --  has similar expression pattern (mutual information value=0.824568) with  --  AT3G62080  --  has similar expression pattern (mutual information value=0.835333) with  --  AT1G60830
40 AT3G12640  --  has similar expression pattern (mutual information value=0.824568) with  --  AT3G62080  --  has similar expression pattern (mutual information value=0.882456) with  --  AT1G79950
41 AT3G12640  --  has similar expression pattern (mutual information value=0.824568) with  --  AT3G62080  --  has similar expression pattern (mutual information value=0.821822) with  --  NF-YC11
42 AT3G12640  --  has similar expression pattern (mutual information value=0.824568) with  --  AT3G62080  --  has similar expression pattern (mutual information value=0.906784) with  --  FAR1
43 AT3G12640  --  has similar expression pattern (mutual information value=0.824568) with  --  AT3G62080  --  has similar expression pattern (mutual information value=0.828394) with  --  SMU2
44 AT3G12640  --  has similar expression pattern (mutual information value=0.866015) with  --  AT5G46840  --  interacts with  --  ATIMPALPHA3; IMPA-3; MOS6
45 AT3G12640  --  has similar expression pattern (mutual information value=0.866015) with  --  AT5G46840  --  interacts with  --  IMPA-2
46 AT3G12640  --  has similar expression pattern (mutual information value=0.866015) with  --  AT5G46840  --  has similar expression pattern (mutual information value=0.804775) with  --  PSBW
47 AT3G12640  --  has similar expression pattern (mutual information value=0.866015) with  --  AT5G46840  --  has similar expression pattern (mutual information value=0.824497) with  --  AT2G34620
48 AT3G12640  --  has similar expression pattern (mutual information value=0.866015) with  --  AT5G46840  --  has similar expression pattern (mutual information value=0.805114) with  --  AT2G35330
49 AT3G12640  --  has similar expression pattern (mutual information value=0.866015) with  --  AT5G46840  --  has similar expression pattern (mutual information value=0.875825) with  --  AT2G02160
50 AT3G12640  --  has similar expression pattern (mutual information value=0.866015) with  --  AT5G46840  --  has similar expression pattern (mutual information value=0.927408) with  --  ATCDC5; ATMYBCDC5; CDC5
51 AT3G12640  --  has similar expression pattern (mutual information value=0.866015) with  --  AT5G46840  --  has similar expression pattern (mutual information value=0.864471) with  --  emb1220
52 AT3G12640  --  has similar expression pattern (mutual information value=0.866015) with  --  AT5G46840  --  has similar expression pattern (mutual information value=0.864471) with  --  AT3G60610
53 AT3G12640  --  has similar expression pattern (mutual information value=0.866015) with  --  AT5G46840  --  has similar expression pattern (mutual information value=0.921559) with  --  At-RSZ21; RSZ21; RSZP21; SRZ-21; SRZ21
54 AT3G12640  --  has similar expression pattern (mutual information value=0.866015) with  --  AT5G46840  --  has similar expression pattern (mutual information value=0.859993) with  --  GAPA-2
55 AT3G12640  --  has similar expression pattern (mutual information value=0.866015) with  --  AT5G46840  --  has similar expression pattern (mutual information value=0.904434) with  --  AT1G48950
56 AT3G12640  --  has similar expression pattern (mutual information value=0.866015) with  --  AT5G46840  --  has similar expression pattern (mutual information value=0.802388) with  --  AT1G72390
57 AT3G12640  --  has similar expression pattern (mutual information value=0.866015) with  --  AT5G46840  --  has similar expression pattern (mutual information value=0.815847) with  --  AT1G52220
58 AT3G12640  --  has similar expression pattern (mutual information value=0.866015) with  --  AT5G46840  --  has similar expression pattern (mutual information value=0.880412) with  --  AT3G07220
59 AT3G12640  --  has similar expression pattern (mutual information value=0.866015) with  --  AT5G46840  --  has similar expression pattern (mutual information value=0.880412) with  --  AT3G07260
60 AT3G12640  --  has similar expression pattern (mutual information value=0.866015) with  --  AT5G46840  --  has similar expression pattern (mutual information value=0.808458) with  --  AT2G34040
61 AT3G12640  --  has similar expression pattern (mutual information value=0.866015) with  --  AT5G46840  --  has similar expression pattern (mutual information value=0.859521) with  --  AT1G56290
62 AT3G12640  --  has similar expression pattern (mutual information value=0.866015) with  --  AT5G46840  --  has similar expression pattern (mutual information value=0.911262) with  --  AT3G47610
63 AT3G12640  --  has similar expression pattern (mutual information value=0.866015) with  --  AT5G46840  --  has similar expression pattern (mutual information value=0.813595) with  --  ACSF; CHL27; CRD1
64 AT3G12640  --  has similar expression pattern (mutual information value=0.866015) with  --  AT5G46840  --  has similar expression pattern (mutual information value=0.936373) with  --  CKB3
65 AT3G12640  --  has similar expression pattern (mutual information value=0.866015) with  --  AT5G46840  --  has similar expression pattern (mutual information value=0.920709) with  --  EMB2789; MOS7
66 AT3G12640  --  has similar expression pattern (mutual information value=0.866015) with  --  AT5G46840  --  has similar expression pattern (mutual information value=0.906548) with  --  AT5G07360
67 AT3G12640  --  has similar expression pattern (mutual information value=0.866015) with  --  AT5G46840  --  has similar expression pattern (mutual information value=0.837793) with  --  WIT1
68 AT3G12640  --  has similar expression pattern (mutual information value=0.866015) with  --  AT5G46840  --  has similar expression pattern (mutual information value=0.918988) with  --  AT5G13560
69 AT3G12640  --  has similar expression pattern (mutual information value=0.866015) with  --  AT5G46840  --  has similar expression pattern (mutual information value=0.812018) with  --  APE2; TPT
70 AT3G12640  --  has similar expression pattern (mutual information value=0.866015) with  --  AT5G46840  --  has similar expression pattern (mutual information value=0.84149) with  --  AT5G47090
71 AT3G12640  --  has similar expression pattern (mutual information value=0.866015) with  --  AT5G46840  --  has similar expression pattern (mutual information value=0.899475) with  --  AT5G49400
72 AT3G12640  --  has similar expression pattern (mutual information value=0.866015) with  --  AT5G46840  --  has similar expression pattern (mutual information value=0.835189) with  --  AT5G49880
73 AT3G12640  --  has similar expression pattern (mutual information value=0.866015) with  --  AT5G46840  --  has similar expression pattern (mutual information value=0.814637) with  --  AT5G59250
74 AT3G12640  --  has similar expression pattern (mutual information value=0.866015) with  --  AT5G46840  --  has similar expression pattern (mutual information value=0.804254) with  --  AT4G16980
75 AT3G12640  --  has similar expression pattern (mutual information value=0.845097) with  --  HOS15  --  has similar expression pattern (mutual information value=0.977227) with  --  SMP1
76 AT3G12640  --  has similar expression pattern (mutual information value=0.845097) with  --  HOS15  --  has similar expression pattern (mutual information value=0.874439) with  --  AT1G65220
77 AT3G12640  --  has similar expression pattern (mutual information value=0.845097) with  --  HOS15  --  has similar expression pattern (mutual information value=0.964061) with  --  AtBRCC36A; BRCC36A
78 AT3G12640  --  has similar expression pattern (mutual information value=0.845097) with  --  HOS15  --  has similar expression pattern (mutual information value=0.964061) with  --  AtBRCC36B; BRCC36B
79 AT3G12640  --  has similar expression pattern (mutual information value=0.845097) with  --  HOS15  --  has similar expression pattern (mutual information value=0.942943) with  --  HUB2
80 AT3G12640  --  has similar expression pattern (mutual information value=0.845097) with  --  HOS15  --  has similar expression pattern (mutual information value=1.01236) with  --  AT1G02330
81 AT3G12640  --  has similar expression pattern (mutual information value=0.845097) with  --  HOS15  --  has similar expression pattern (mutual information value=0.891282) with  --  AT3G04160
82 AT3G12640  --  has similar expression pattern (mutual information value=0.845097) with  --  HOS15  --  has similar expression pattern (mutual information value=0.994645) with  --  AT3G12140
83 AT3G12640  --  has similar expression pattern (mutual information value=0.845097) with  --  HOS15  --  has similar expression pattern (mutual information value=0.949811) with  --  ATMBD8; MBD8
84 AT3G12640  --  has similar expression pattern (mutual information value=0.845097) with  --  HOS15  --  has similar expression pattern (mutual information value=0.970734) with  --  AT4G12760
85 AT3G12640  --  has similar expression pattern (mutual information value=0.845097) with  --  HOS15  --  has similar expression pattern (mutual information value=0.898968) with  --  AT4G27120
86 AT3G12640  --  has similar expression pattern (mutual information value=0.845097) with  --  HOS15  --  has similar expression pattern (mutual information value=0.885374) with  --  AME3
87 AT3G12640  --  has similar expression pattern (mutual information value=0.845097) with  --  HOS15  --  has similar expression pattern (mutual information value=0.853953) with  --  AT3G53390
88 AT3G12640  --  has similar expression pattern (mutual information value=0.845097) with  --  HOS15  --  has similar expression pattern (mutual information value=0.925938) with  --  RPL27
89 AT3G12640  --  has similar expression pattern (mutual information value=0.905714) with  --  ELF9  --  has similar expression pattern (mutual information value=0.91213) with  --  ATSCC3; SCC3
90 AT3G12640  --  has similar expression pattern (mutual information value=0.905714) with  --  ELF9  --  has similar expression pattern (mutual information value=0.91374) with  --  DRP3B
91 AT3G12640  --  has similar expression pattern (mutual information value=0.905714) with  --  ELF9  --  has similar expression pattern (mutual information value=0.983156) with  --  MBD10
92 AT3G12640  --  has similar expression pattern (mutual information value=0.905714) with  --  ELF9  --  has similar expression pattern (mutual information value=0.85167) with  --  ARF12
93 AT3G12640  --  has similar expression pattern (mutual information value=0.905714) with  --  ELF9  --  has similar expression pattern (mutual information value=0.897023) with  --  AT1G15940
94 AT3G12640  --  has similar expression pattern (mutual information value=0.905714) with  --  ELF9  --  has similar expression pattern (mutual information value=0.856242) with  --  AT1G01930
95 AT3G12640  --  has similar expression pattern (mutual information value=0.905714) with  --  ELF9  --  has similar expression pattern (mutual information value=0.804281) with  --  AT1G63490
96 AT3G12640  --  has similar expression pattern (mutual information value=0.905714) with  --  ELF9  --  has similar expression pattern (mutual information value=0.851478) with  --  ATCHR12
97 AT3G12640  --  has similar expression pattern (mutual information value=0.905714) with  --  ELF9  --  has similar expression pattern (mutual information value=0.821247) with  --  AT3G22220
98 AT3G12640  --  has similar expression pattern (mutual information value=0.905714) with  --  ELF9  --  has similar expression pattern (mutual information value=0.864439) with  --  AT4G17950
99 AT3G12640  --  has similar expression pattern (mutual information value=0.905714) with  --  ELF9  --  has similar expression pattern (mutual information value=0.9351) with  --  CYCT1;4
100 AT3G12640  --  has similar expression pattern (mutual information value=0.905714) with  --  ELF9  --  has similar expression pattern (mutual information value=0.855311) with  --  ATFIP37; FIP37
101 AT3G12640  --  has similar expression pattern (mutual information value=0.905714) with  --  ELF9  --  has similar expression pattern (mutual information value=0.870055) with  --  ATO
102 AT3G12640  --  has similar expression pattern (mutual information value=0.905714) with  --  ELF9  --  has similar expression pattern (mutual information value=0.824003) with  --  AT5G10950
103 AT3G12640  --  has similar expression pattern (mutual information value=0.905714) with  --  ELF9  --  has similar expression pattern (mutual information value=0.94363) with  --  AT5G55670
104 AT3G12640  --  has similar expression pattern (mutual information value=0.905714) with  --  ELF9  --  has similar expression pattern (mutual information value=0.930098) with  --  AT1G31870
105 AT3G12640  --  has similar expression pattern (mutual information value=0.938105) with  --  AT4G17620  --  has similar expression pattern (mutual information value=0.9013) with  --  ATRPA1A; ATRPA70A; RPA1A; RPA70A
106 AT3G12640  --  has similar expression pattern (mutual information value=0.938105) with  --  AT4G17620  --  has similar expression pattern (mutual information value=0.82337) with  --  AT1G03760
107 AT3G12640  --  has similar expression pattern (mutual information value=0.938105) with  --  AT4G17620  --  has similar expression pattern (mutual information value=0.813661) with  --  AT1G65020
108 AT3G12640  --  has similar expression pattern (mutual information value=0.938105) with  --  AT4G17620  --  has similar expression pattern (mutual information value=0.879394) with  --  DRT111
109 AT3G12640  --  has similar expression pattern (mutual information value=0.938105) with  --  AT4G17620  --  has similar expression pattern (mutual information value=0.843201) with  --  GATA28; TIFY2A; ZML2
110 AT3G12640  --  has similar expression pattern (mutual information value=0.938105) with  --  AT4G17620  --  has similar expression pattern (mutual information value=0.937678) with  --  ATPRP40C; PRP40C
111 AT3G12640  --  has similar expression pattern (mutual information value=0.938105) with  --  AT4G17620  --  has similar expression pattern (mutual information value=0.966675) with  --  LWD2
112 AT3G12640  --  has similar expression pattern (mutual information value=0.938105) with  --  AT4G17620  --  has similar expression pattern (mutual information value=1.07156) with  --  AT4G11560
113 AT3G12640  --  has similar expression pattern (mutual information value=0.938105) with  --  AT4G17620  --  has similar expression pattern (mutual information value=0.979053) with  --  AT3G43240
114 AT3G12640  --  has similar expression pattern (mutual information value=0.938105) with  --  AT4G17620  --  has similar expression pattern (mutual information value=0.981724) with  --  SIS3
115 AT3G12640  --  has similar expression pattern (mutual information value=0.938105) with  --  AT4G17620  --  has similar expression pattern (mutual information value=0.860856) with  --  SUA
116 AT3G12640  --  has similar expression pattern (mutual information value=0.938105) with  --  AT4G17620  --  has similar expression pattern (mutual information value=0.869472) with  --  AGL18
117 AT3G12640  --  has similar expression pattern (mutual information value=0.938105) with  --  AT4G17620  --  has similar expression pattern (mutual information value=0.884549) with  --  At-RS31; ATRSP31; RS31; RSP31
118 AT3G12640  --  has similar expression pattern (mutual information value=0.938105) with  --  AT4G17620  --  has similar expression pattern (mutual information value=1.25202) with  --  ATGSTT2; GST10B; GSTT2
119 AT3G12640  --  has similar expression pattern (mutual information value=0.938105) with  --  AT4G17620  --  has similar expression pattern (mutual information value=1.25202) with  --  ATGSTT3; GST10C; GSTT3
120 AT3G12640  --  has similar expression pattern (mutual information value=0.938105) with  --  AT4G17620  --  has similar expression pattern (mutual information value=0.835543) with  --  AT5G44150
121 AT3G12640  --  has similar expression pattern (mutual information value=0.938105) with  --  AT4G17620  --  has similar expression pattern (mutual information value=0.902383) with  --  emb1441
122 AT3G12640  --  has similar expression pattern (mutual information value=0.938105) with  --  AT4G17620  --  has similar expression pattern (mutual information value=0.980877) with  --  AT5G15570
123 AT3G12640  --  has similar expression pattern (mutual information value=0.938105) with  --  AT4G17620  --  has similar expression pattern (mutual information value=0.860737) with  --  AT5G10710
124 AT3G12640  --  has similar expression pattern (mutual information value=0.938105) with  --  AT4G17620  --  has similar expression pattern (mutual information value=0.849161) with  --  AT5G09390
125 AT3G12640  --  has similar expression pattern (mutual information value=0.938105) with  --  AT4G17620  --  has similar expression pattern (mutual information value=0.829843) with  --  AT2G45320
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