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A Graph Search-Empowered Integrative Database of Arabidopsis Signaling Transduction, Metabolism and Gene Regulation Networks   
Location:  Home > Details for node AT3G25720
Type: Protein GRN ID: np27996 Name:
Annotation: RNA-directed DNA polymerase (reverse transcriptase)-related family protein
Gene Locus: AT3G25720
Gene Expression (Affy ATH1 probeset): 257639_at    
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 Protein modification
 Protein-protein interaction
        also include predicted relationship
 Compound-protein interaction
 TF-target gene regulation
 Small RNA-target regulation
        also include predicted relationship
 Carrier and transported molecule
 Catalytic chemical reaction
 Co-expressed gene pair
        with mutual information value >

  Ignore nodes having > relationships
 
Relationship type:  protein modification     catalytic chemical reaction     protein-protein interaction    
compound-protein interaction     TF-target gene regulation     small RNA-target regulation    
co-expressed gene pair     carrier and transported molecule     family/complex and member
Relationship evidence:  Solid line: validated          Dashed line: predicted
Relationship direction: Arrow: positive          T shape: negative          None arrow: unknown or n/a
Hormone association: Thicker line: hormone related relationship         : hormone related Node
Node type:  Transcription factor or transcriptional regulator       Compound       Kinase
 Small regulatory RNA (miRNA & ta-siRNA)       Other nodes
No. Path
2 AT3G25720  --  has similar expression pattern (mutual information value=0.877986) with  --  AT2G02515
3 AT3G25720  --  has similar expression pattern (mutual information value=0.808032) with  --  AT2G14595
4 AT3G25720  --  has similar expression pattern (mutual information value=0.837497) with  --  AtTLP5; TLP5
5 AT3G25720  --  has similar expression pattern (mutual information value=0.976899) with  --  AT1G34440
6 AT3G25720  --  has similar expression pattern (mutual information value=0.886542) with  --  AT3G42140
7 AT3G25720  --  has similar expression pattern (mutual information value=1.08523) with  --  AT5G54220
8 AT3G25720  --  has similar expression pattern (mutual information value=0.878118) with  --  AT5G27510
9 AT3G25720  --  has similar expression pattern (mutual information value=0.877986) with  --  AT2G02515  --  has similar expression pattern (mutual information value=0.90044) with  --  AT2G07070
10 AT3G25720  --  has similar expression pattern (mutual information value=0.877986) with  --  AT2G02515  --  has similar expression pattern (mutual information value=0.902849) with  --  AT2G18590
11 AT3G25720  --  has similar expression pattern (mutual information value=0.877986) with  --  AT2G02515  --  has similar expression pattern (mutual information value=0.853246) with  --  AT2G16690
12 AT3G25720  --  has similar expression pattern (mutual information value=0.877986) with  --  AT2G02515  --  has similar expression pattern (mutual information value=0.881347) with  --  AT1G09550
13 AT3G25720  --  has similar expression pattern (mutual information value=0.877986) with  --  AT2G02515  --  has similar expression pattern (mutual information value=0.831478) with  --  AAP8; ATAAP8
14 AT3G25720  --  has similar expression pattern (mutual information value=0.877986) with  --  AT2G02515  --  has similar expression pattern (mutual information value=0.933895) with  --  AT1G31100
15 AT3G25720  --  has similar expression pattern (mutual information value=0.877986) with  --  AT2G02515  --  has similar expression pattern (mutual information value=0.98375) with  --  AT1G36150
16 AT3G25720  --  has similar expression pattern (mutual information value=0.877986) with  --  AT2G02515  --  has similar expression pattern (mutual information value=0.890227) with  --  AT1G35617
17 AT3G25720  --  has similar expression pattern (mutual information value=0.877986) with  --  AT2G02515  --  has similar expression pattern (mutual information value=0.816925) with  --  AT3G30250
18 AT3G25720  --  has similar expression pattern (mutual information value=0.877986) with  --  AT2G02515  --  has similar expression pattern (mutual information value=0.923471) with  --  AT3G42820
19 AT3G25720  --  has similar expression pattern (mutual information value=0.877986) with  --  AT2G02515  --  has similar expression pattern (mutual information value=1.01989) with  --  AT3G42770
20 AT3G25720  --  has similar expression pattern (mutual information value=0.877986) with  --  AT2G02515  --  has similar expression pattern (mutual information value=0.988314) with  --  AT5G43800
21 AT3G25720  --  has similar expression pattern (mutual information value=0.877986) with  --  AT2G02515  --  has similar expression pattern (mutual information value=0.85278) with  --  AT5G09370
22 AT3G25720  --  has similar expression pattern (mutual information value=0.808032) with  --  AT2G14595  --  has similar expression pattern (mutual information value=0.805828) with  --  AT2G18820
23 AT3G25720  --  has similar expression pattern (mutual information value=0.808032) with  --  AT2G14595  --  has similar expression pattern (mutual information value=0.843268) with  --  AT2G01240
24 AT3G25720  --  has similar expression pattern (mutual information value=0.808032) with  --  AT2G14595  --  has similar expression pattern (mutual information value=0.816052) with  --  AT2G16110
25 AT3G25720  --  has similar expression pattern (mutual information value=0.808032) with  --  AT2G14595  --  has similar expression pattern (mutual information value=0.826677) with  --  sks10
26 AT3G25720  --  has similar expression pattern (mutual information value=0.808032) with  --  AT2G14595  --  is the target gene of  --  ath-miR779.1
27 AT3G25720  --  has similar expression pattern (mutual information value=0.837497) with  --  AtTLP5; TLP5  --  is modified by  --  MPK16
28 AT3G25720  --  has similar expression pattern (mutual information value=0.976899) with  --  AT1G34440  --  has similar expression pattern (mutual information value=0.841053) with  --  AT2G15720
29 AT3G25720  --  has similar expression pattern (mutual information value=0.976899) with  --  AT1G34440  --  has similar expression pattern (mutual information value=0.834979) with  --  AT1G60460
30 AT3G25720  --  has similar expression pattern (mutual information value=0.976899) with  --  AT1G34440  --  has similar expression pattern (mutual information value=0.824362) with  --  ATRAD51B; RAD51B
31 AT3G25720  --  has similar expression pattern (mutual information value=0.976899) with  --  AT1G34440  --  has similar expression pattern (mutual information value=0.86737) with  --  AT2G04560
32 AT3G25720  --  has similar expression pattern (mutual information value=0.976899) with  --  AT1G34440  --  has similar expression pattern (mutual information value=0.943127) with  --  AT2G13510
33 AT3G25720  --  has similar expression pattern (mutual information value=0.976899) with  --  AT1G34440  --  has similar expression pattern (mutual information value=0.908848) with  --  KOM
34 AT3G25720  --  has similar expression pattern (mutual information value=0.976899) with  --  AT1G34440  --  has similar expression pattern (mutual information value=0.848327) with  --  AT1G43760
35 AT3G25720  --  has similar expression pattern (mutual information value=0.976899) with  --  AT1G34440  --  has similar expression pattern (mutual information value=0.855948) with  --  AT3G25260
36 AT3G25720  --  has similar expression pattern (mutual information value=0.976899) with  --  AT1G34440  --  has similar expression pattern (mutual information value=0.983622) with  --  AT2G35080
37 AT3G25720  --  has similar expression pattern (mutual information value=0.976899) with  --  AT1G34440  --  has similar expression pattern (mutual information value=0.947263) with  --  AT3G30280
38 AT3G25720  --  has similar expression pattern (mutual information value=0.976899) with  --  AT1G34440  --  has similar expression pattern (mutual information value=0.818728) with  --  AT5G28600
39 AT3G25720  --  has similar expression pattern (mutual information value=0.976899) with  --  AT1G34440  --  has similar expression pattern (mutual information value=0.951017) with  --  AT2G33260
40 AT3G25720  --  has similar expression pattern (mutual information value=0.976899) with  --  AT1G34440  --  has similar expression pattern (mutual information value=1.01273) with  --  AT3G49480
41 AT3G25720  --  has similar expression pattern (mutual information value=0.976899) with  --  AT1G34440  --  has similar expression pattern (mutual information value=0.84676) with  --  AGP23; ATAGP23
42 AT3G25720  --  has similar expression pattern (mutual information value=0.976899) with  --  AT1G34440  --  has similar expression pattern (mutual information value=0.919395) with  --  AT3G59845
43 AT3G25720  --  has similar expression pattern (mutual information value=0.976899) with  --  AT1G34440  --  has similar expression pattern (mutual information value=0.871908) with  --  AT5G18880
44 AT3G25720  --  has similar expression pattern (mutual information value=0.976899) with  --  AT1G34440  --  has similar expression pattern (mutual information value=0.899651) with  --  AtPP2-B12; PP2-B12
45 AT3G25720  --  has similar expression pattern (mutual information value=0.976899) with  --  AT1G34440  --  has similar expression pattern (mutual information value=0.995031) with  --  AT5G54350
46 AT3G25720  --  has similar expression pattern (mutual information value=0.976899) with  --  AT1G34440  --  has similar expression pattern (mutual information value=0.88686) with  --  AT5G55320
47 AT3G25720  --  has similar expression pattern (mutual information value=0.976899) with  --  AT1G34440  --  has similar expression pattern (mutual information value=0.983127) with  --  AtMYB103; ATMYB80; MS188; MYB103; MYB80
48 AT3G25720  --  has similar expression pattern (mutual information value=0.976899) with  --  AT1G34440  --  has similar expression pattern (mutual information value=0.883421) with  --  AT5G35300
49 AT3G25720  --  has similar expression pattern (mutual information value=0.886542) with  --  AT3G42140  --  has similar expression pattern (mutual information value=0.903467) with  --  AT2G10740
50 AT3G25720  --  has similar expression pattern (mutual information value=0.886542) with  --  AT3G42140  --  has similar expression pattern (mutual information value=0.85801) with  --  AT1G53810
51 AT3G25720  --  has similar expression pattern (mutual information value=0.886542) with  --  AT3G42140  --  has similar expression pattern (mutual information value=0.835726) with  --  AT3G19090
52 AT3G25720  --  has similar expression pattern (mutual information value=0.886542) with  --  AT3G42140  --  has similar expression pattern (mutual information value=0.950858) with  --  AT1G42650
53 AT3G25720  --  has similar expression pattern (mutual information value=0.886542) with  --  AT3G42140  --  has similar expression pattern (mutual information value=0.812423) with  --  SVL4
54 AT3G25720  --  has similar expression pattern (mutual information value=0.886542) with  --  AT3G42140  --  has similar expression pattern (mutual information value=0.8127) with  --  AT5G26640
55 AT3G25720  --  has similar expression pattern (mutual information value=0.886542) with  --  AT3G42140  --  has similar expression pattern (mutual information value=0.90805) with  --  AT5G19810
56 AT3G25720  --  has similar expression pattern (mutual information value=1.08523) with  --  AT5G54220  --  has similar expression pattern (mutual information value=0.8321) with  --  LBD10
57 AT3G25720  --  has similar expression pattern (mutual information value=1.08523) with  --  AT5G54220  --  has similar expression pattern (mutual information value=1.05373) with  --  AT2G22950
58 AT3G25720  --  has similar expression pattern (mutual information value=1.08523) with  --  AT5G54220  --  has similar expression pattern (mutual information value=0.866075) with  --  AT2G18970
59 AT3G25720  --  has similar expression pattern (mutual information value=1.08523) with  --  AT5G54220  --  has similar expression pattern (mutual information value=0.843026) with  --  AT2G29370
60 AT3G25720  --  has similar expression pattern (mutual information value=1.08523) with  --  AT5G54220  --  has similar expression pattern (mutual information value=0.82799) with  --  AT2G27520
61 AT3G25720  --  has similar expression pattern (mutual information value=1.08523) with  --  AT5G54220  --  has similar expression pattern (mutual information value=0.805574) with  --  ATCKX2
62 AT3G25720  --  has similar expression pattern (mutual information value=1.08523) with  --  AT5G54220  --  has similar expression pattern (mutual information value=1.02967) with  --  AT2G25565
63 AT3G25720  --  has similar expression pattern (mutual information value=1.08523) with  --  AT5G54220  --  has similar expression pattern (mutual information value=0.828156) with  --  LLG2
64 AT3G25720  --  has similar expression pattern (mutual information value=1.08523) with  --  AT5G54220  --  has similar expression pattern (mutual information value=1.00686) with  --  GLOX1
65 AT3G25720  --  has similar expression pattern (mutual information value=1.08523) with  --  AT5G54220  --  has similar expression pattern (mutual information value=0.932504) with  --  AT2G17910
66 AT3G25720  --  has similar expression pattern (mutual information value=1.08523) with  --  AT5G54220  --  has similar expression pattern (mutual information value=0.82051) with  --  AT1G62210
67 AT3G25720  --  has similar expression pattern (mutual information value=1.08523) with  --  AT5G54220  --  has similar expression pattern (mutual information value=0.996992) with  --  PRA1.G1
68 AT3G25720  --  has similar expression pattern (mutual information value=1.08523) with  --  AT5G54220  --  has similar expression pattern (mutual information value=0.908592) with  --  AT2G20460
69 AT3G25720  --  has similar expression pattern (mutual information value=1.08523) with  --  AT5G54220  --  has similar expression pattern (mutual information value=0.917855) with  --  AT2G16000
70 AT3G25720  --  has similar expression pattern (mutual information value=1.08523) with  --  AT5G54220  --  has similar expression pattern (mutual information value=0.800821) with  --  ARF12
71 AT3G25720  --  has similar expression pattern (mutual information value=1.08523) with  --  AT5G54220  --  has similar expression pattern (mutual information value=0.836134) with  --  ATSTP9; STP9
72 AT3G25720  --  has similar expression pattern (mutual information value=1.08523) with  --  AT5G54220  --  has similar expression pattern (mutual information value=0.800678) with  --  AT1G15600
73 AT3G25720  --  has similar expression pattern (mutual information value=1.08523) with  --  AT5G54220  --  has similar expression pattern (mutual information value=0.825128) with  --  AtMYB117; LOF1; MYB117
74 AT3G25720  --  has similar expression pattern (mutual information value=1.08523) with  --  AT5G54220  --  has similar expression pattern (mutual information value=0.97543) with  --  AT1G48095
75 AT3G25720  --  has similar expression pattern (mutual information value=1.08523) with  --  AT5G54220  --  has similar expression pattern (mutual information value=0.967218) with  --  AtMYB113; MYB113
76 AT3G25720  --  has similar expression pattern (mutual information value=1.08523) with  --  AT5G54220  --  has similar expression pattern (mutual information value=0.834679) with  --  AT1G72131
77 AT3G25720  --  has similar expression pattern (mutual information value=1.08523) with  --  AT5G54220  --  has similar expression pattern (mutual information value=0.838754) with  --  MAP3KE1; MAPKKK7
78 AT3G25720  --  has similar expression pattern (mutual information value=1.08523) with  --  AT5G54220  --  has similar expression pattern (mutual information value=0.838754) with  --  MAP3KE2; MAPKKK6
79 AT3G25720  --  has similar expression pattern (mutual information value=1.08523) with  --  AT5G54220  --  has similar expression pattern (mutual information value=0.904037) with  --  AT3G04170
80 AT3G25720  --  has similar expression pattern (mutual information value=1.08523) with  --  AT5G54220  --  has similar expression pattern (mutual information value=1.04291) with  --  AT3G27590
81 AT3G25720  --  has similar expression pattern (mutual information value=1.08523) with  --  AT5G54220  --  has similar expression pattern (mutual information value=1.06811) with  --  AT3G26614
82 AT3G25720  --  has similar expression pattern (mutual information value=1.08523) with  --  AT5G54220  --  has similar expression pattern (mutual information value=0.976438) with  --  AT3G21410
83 AT3G25720  --  has similar expression pattern (mutual information value=1.08523) with  --  AT5G54220  --  has similar expression pattern (mutual information value=0.807548) with  --  AT1G35880
84 AT3G25720  --  has similar expression pattern (mutual information value=1.08523) with  --  AT5G54220  --  has similar expression pattern (mutual information value=1.0945) with  --  AT3G08490
85 AT3G25720  --  has similar expression pattern (mutual information value=1.08523) with  --  AT5G54220  --  has similar expression pattern (mutual information value=0.828213) with  --  AT4G04000
86 AT3G25720  --  has similar expression pattern (mutual information value=1.08523) with  --  AT5G54220  --  has similar expression pattern (mutual information value=0.973379) with  --  AT4G03950
87 AT3G25720  --  has similar expression pattern (mutual information value=1.08523) with  --  AT5G54220  --  has similar expression pattern (mutual information value=0.88761) with  --  AT4G04690
88 AT3G25720  --  has similar expression pattern (mutual information value=1.08523) with  --  AT5G54220  --  has similar expression pattern (mutual information value=0.806111) with  --  AT4G08370
89 AT3G25720  --  has similar expression pattern (mutual information value=1.08523) with  --  AT5G54220  --  has similar expression pattern (mutual information value=0.802413) with  --  AT4G26730
90 AT3G25720  --  has similar expression pattern (mutual information value=1.08523) with  --  AT5G54220  --  has similar expression pattern (mutual information value=0.802413) with  --  AT2G16030
91 AT3G25720  --  has similar expression pattern (mutual information value=1.08523) with  --  AT5G54220  --  has similar expression pattern (mutual information value=0.83675) with  --  AT3G43900
92 AT3G25720  --  has similar expression pattern (mutual information value=1.08523) with  --  AT5G54220  --  has similar expression pattern (mutual information value=0.873591) with  --  AT3G45720
93 AT3G25720  --  has similar expression pattern (mutual information value=1.08523) with  --  AT5G54220  --  has similar expression pattern (mutual information value=0.905274) with  --  TMT3
94 AT3G25720  --  has similar expression pattern (mutual information value=1.08523) with  --  AT5G54220  --  has similar expression pattern (mutual information value=0.845315) with  --  AT3G58890
95 AT3G25720  --  has similar expression pattern (mutual information value=1.08523) with  --  AT5G54220  --  has similar expression pattern (mutual information value=0.961258) with  --  ATATG18E; ATG18E; G18E
96 AT3G25720  --  has similar expression pattern (mutual information value=1.08523) with  --  AT5G54220  --  has similar expression pattern (mutual information value=0.827807) with  --  AT5G08090
97 AT3G25720  --  has similar expression pattern (mutual information value=1.08523) with  --  AT5G54220  --  has similar expression pattern (mutual information value=1.08279) with  --  AT5G10420
98 AT3G25720  --  has similar expression pattern (mutual information value=1.08523) with  --  AT5G54220  --  has similar expression pattern (mutual information value=0.84318) with  --  AT5G40050
99 AT3G25720  --  has similar expression pattern (mutual information value=1.08523) with  --  AT5G54220  --  has similar expression pattern (mutual information value=1.08602) with  --  AtRLP55; RLP55
100 AT3G25720  --  has similar expression pattern (mutual information value=1.08523) with  --  AT5G54220  --  has similar expression pattern (mutual information value=0.880245) with  --  AT5G47130
101 AT3G25720  --  has similar expression pattern (mutual information value=1.08523) with  --  AT5G54220  --  has similar expression pattern (mutual information value=0.822995) with  --  AT5G48210
102 AT3G25720  --  has similar expression pattern (mutual information value=1.08523) with  --  AT5G54220  --  has similar expression pattern (mutual information value=0.83149) with  --  AT5G55650
103 AT3G25720  --  has similar expression pattern (mutual information value=1.08523) with  --  AT5G54220  --  has similar expression pattern (mutual information value=1.00917) with  --  AT5G57720
104 AT3G25720  --  has similar expression pattern (mutual information value=1.08523) with  --  AT5G54220  --  has similar expression pattern (mutual information value=0.829016) with  --  ABCG28
105 AT3G25720  --  has similar expression pattern (mutual information value=1.08523) with  --  AT5G54220  --  has similar expression pattern (mutual information value=0.90846) with  --  ASD2; ATASD2
106 AT3G25720  --  has similar expression pattern (mutual information value=1.08523) with  --  AT5G54220  --  has similar expression pattern (mutual information value=0.854119) with  --  AT5G20760
107 AT3G25720  --  has similar expression pattern (mutual information value=1.08523) with  --  AT5G54220  --  has similar expression pattern (mutual information value=0.848298) with  --  AT1G56675
108 AT3G25720  --  has similar expression pattern (mutual information value=1.08523) with  --  AT5G54220  --  has similar expression pattern (mutual information value=0.848298) with  --  AT4G09146
109 AT3G25720  --  has similar expression pattern (mutual information value=1.08523) with  --  AT5G54220  --  has similar expression pattern (mutual information value=1.07979) with  --  ATPUP3; PUP3
110 AT3G25720  --  has similar expression pattern (mutual information value=1.08523) with  --  AT5G54220  --  has similar expression pattern (mutual information value=1.00217) with  --  AT4G17580
111 AT3G25720  --  has similar expression pattern (mutual information value=1.08523) with  --  AT5G54220  --  has similar expression pattern (mutual information value=0.926669) with  --  AT4G15750
112 AT3G25720  --  has similar expression pattern (mutual information value=1.08523) with  --  AT5G54220  --  has similar expression pattern (mutual information value=0.927888) with  --  AT4G14815
113 AT3G25720  --  has similar expression pattern (mutual information value=0.878118) with  --  AT5G27510  --  has similar expression pattern (mutual information value=0.898861) with  --  AT2G06820
114 AT3G25720  --  has similar expression pattern (mutual information value=0.878118) with  --  AT5G27510  --  has similar expression pattern (mutual information value=0.848839) with  --  AGL5; SHP2
115 AT3G25720  --  has similar expression pattern (mutual information value=0.878118) with  --  AT5G27510  --  has similar expression pattern (mutual information value=0.895422) with  --  AT2G16410
116 AT3G25720  --  has similar expression pattern (mutual information value=0.878118) with  --  AT5G27510  --  has similar expression pattern (mutual information value=0.826928) with  --  AT3G59610
   Funding by the National Science Foundation    Funding by the Oklahoma Center for the Advancement of Science & Technology    Additional funding by the Samuel Roberts Noble Foundation

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