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A Graph Search-Empowered Integrative Database of Arabidopsis Signaling Transduction, Metabolism and Gene Regulation Networks   
Location:  Home > Details for node Choline
Type: Compound GRN ID: nc50114 Name: Choline
Annotation: Choline; Bilineurine
KEGG Acc.: C00114
CHEBI ID:
Formula: C5H14NO
M.W.: 104.1708
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Data Filter
 Protein modification
 Protein-protein interaction
        also include predicted relationship
 Compound-protein interaction
 TF-target gene regulation
 Small RNA-target regulation
        also include predicted relationship
 Carrier and transported molecule
 Catalytic chemical reaction
 Co-expressed gene pair
        with mutual information value >

  Ignore nodes having > relationships
 
Relationship type:  protein modification     catalytic chemical reaction     protein-protein interaction    
compound-protein interaction     TF-target gene regulation     small RNA-target regulation    
co-expressed gene pair     carrier and transported molecule     family/complex and member
Relationship evidence:  Solid line: validated          Dashed line: predicted
Relationship direction: Arrow: positive          T shape: negative          None arrow: unknown or n/a
Hormone association: Thicker line: hormone related relationship         : hormone related Node
Node type:  Transcription factor or transcriptional regulator       Compound       Kinase
 Small regulatory RNA (miRNA & ta-siRNA)       Other nodes
No. Path
2 Choline  --  has product (in catalytic reaction)  --  Choline phosphate
3 Choline  --  has product (in catalytic reaction)  --  Sinapine
4 Choline  --  has product (in catalytic reaction)  --  D-Glucose
5 Choline  --  is product (in catalytic reaction) of  --  PLDALPHA3
6 Choline  --  is product (in catalytic reaction) of  --  Phosphatidylcholine
7 Choline  --  is product (in catalytic reaction) of  --  ATPLDDELTA; PLDDELTA
8 Choline  --  is product (in catalytic reaction) of  --  MEE54; PLDGAMMA1
9 Choline  --  is product (in catalytic reaction) of  --  PLDGAMMA3
10 Choline  --  is product (in catalytic reaction) of  --  PLDGAMMA2
11 Choline  --  is product (in catalytic reaction) of  --  PLDBETA2
12 Choline  --  is product (in catalytic reaction) of  --  PLD ZETA 1; PLDP1; PLDZ1; PLDZETA1
13 Choline  --  is product (in catalytic reaction) of  --  PLD; PLDALPHA1
14 Choline  --  is product (in catalytic reaction) of  --  PDLZ2; PLDP2; PLDZETA2
15 Choline  --  is product (in catalytic reaction) of  --  PLDBETA; PLDBETA1
16 Choline  --  is product (in catalytic reaction) of  --  PLDALPHA4; PLDEPSILON
17 Choline  --  is product (in catalytic reaction) of  --  PLDALPHA2
18 Choline  --  is transported by  --  AT2G41050
19 Choline  --  is transported by  --  AT2G33220
20 Choline  --  is transported by  --  AT2G25130
21 Choline  --  is transported by  --  AT2G05940
22 Choline  --  is transported by  --  AT2G02400
23 Choline  --  is transported by  --  AT1G80400
24 Choline  --  is transported by  --  CDPK1A/CPK30
25 Choline  --  is transported by  --  AT1G51350
26 Choline  --  is transported by  --  AT1G09440
27 Choline  --  has product (in catalytic reaction)  --  Choline phosphate  --  has product (in catalytic reaction)  --  CDP-choline
28 Choline  --  has product (in catalytic reaction)  --  Choline phosphate  --  is product (in catalytic reaction) of  --  NPC6
29 Choline  --  has product (in catalytic reaction)  --  Choline phosphate  --  is product (in catalytic reaction) of  --  NPC5
30 Choline  --  has product (in catalytic reaction)  --  Choline phosphate  --  is product (in catalytic reaction) of  --  NPC4
31 Choline  --  has product (in catalytic reaction)  --  Choline phosphate  --  is product (in catalytic reaction) of  --  NPC3
32 Choline  --  has product (in catalytic reaction)  --  Choline phosphate  --  is product (in catalytic reaction) of  --  NPC2
33 Choline  --  has product (in catalytic reaction)  --  Choline phosphate  --  is product (in catalytic reaction) of  --  NPC1
34 Choline  --  has product (in catalytic reaction)  --  Choline phosphate  --  is product (in catalytic reaction) of  --  AT4G09760
35 Choline  --  has product (in catalytic reaction)  --  Choline phosphate  --  is product (in catalytic reaction) of  --  AT1G74320
36 Choline  --  has product (in catalytic reaction)  --  Sinapine  --  is product (in catalytic reaction) of  --  SCPL19; SNG2
37 Choline  --  has product (in catalytic reaction)  --  Sinapine  --  is product (in catalytic reaction) of  --  1-O-Sinapoyl-beta-D-glucose
38 Choline  --  has product (in catalytic reaction)  --  D-Glucose  --  is product (in catalytic reaction) of  --  ATBG1; BGL1; BGLU18
39 Choline  --  has product (in catalytic reaction)  --  D-Glucose  --  is product (in catalytic reaction) of  --  AT5G49900
40 Choline  --  has product (in catalytic reaction)  --  D-Glucose  --  is product (in catalytic reaction) of  --  beta-D-Glucosyl-(1<->1)-ceramide
41 Choline  --  has product (in catalytic reaction)  --  D-Glucose  --  is product (in catalytic reaction) of  --  AT4G10060
42 Choline  --  has product (in catalytic reaction)  --  D-Glucose  --  is product (in catalytic reaction) of  --  AT3G24180
43 Choline  --  has product (in catalytic reaction)  --  D-Glucose  --  is product (in catalytic reaction) of  --  SCPL8; SNG1
44 Choline  --  is product (in catalytic reaction) of  --  PLDALPHA3  --  has product (in catalytic reaction)  --  Phosphatidate
45 Choline  --  is product (in catalytic reaction) of  --  PLDALPHA3  --  is the target gene of  --  ath-miR3434-5p
46 Choline  --  is product (in catalytic reaction) of  --  Phosphatidylcholine  --  has product (in catalytic reaction)  --  1,2-Diacyl-sn-glycerol
47 Choline  --  is product (in catalytic reaction) of  --  Phosphatidylcholine  --  has product (in catalytic reaction)  --  Carboxylate
48 Choline  --  is product (in catalytic reaction) of  --  Phosphatidylcholine  --  has product (in catalytic reaction)  --  1-Acyl-sn-glycero-3-phosphocholine
49 Choline  --  is product (in catalytic reaction) of  --  Phosphatidylcholine  --  is product (in catalytic reaction) of  --  AT2G45670
50 Choline  --  is product (in catalytic reaction) of  --  Phosphatidylcholine  --  is product (in catalytic reaction) of  --  AT1G80950
51 Choline  --  is product (in catalytic reaction) of  --  Phosphatidylcholine  --  is product (in catalytic reaction) of  --  AT1G63050
52 Choline  --  is product (in catalytic reaction) of  --  Phosphatidylcholine  --  is product (in catalytic reaction) of  --  AT1G12640
53 Choline  --  is product (in catalytic reaction) of  --  ATPLDDELTA; PLDDELTA  --  interacts with  --  GAPC-2; GAPC2
54 Choline  --  is product (in catalytic reaction) of  --  ATPLDDELTA; PLDDELTA  --  interacts with  --  GAPC; GAPC-1; GAPC1
55 Choline  --  is product (in catalytic reaction) of  --  ATPLDDELTA; PLDDELTA  --  is the target gene of  --  ath-miR5021
56 Choline  --  is product (in catalytic reaction) of  --  MEE54; PLDGAMMA1  --  is modified by  --  AGC2; AGC2-1; AtOXI1; OXI1
57 Choline  --  is product (in catalytic reaction) of  --  PLDGAMMA3  --  interacts with  --  AT5G13400
58 Choline  --  is product (in catalytic reaction) of  --  PLDGAMMA3  --  interacts with  --  CPK15
59 Choline  --  is product (in catalytic reaction) of  --  PLD; PLDALPHA1  --  interacts with  --  AT5G15880
60 Choline  --  is product (in catalytic reaction) of  --  PLD; PLDALPHA1  --  interacts with  --  ACBP; ACBP1
61 Choline  --  is product (in catalytic reaction) of  --  PLD; PLDALPHA1  --  interacts with  --  AtPFA-DSP1; PFA-DSP1
62 Choline  --  is product (in catalytic reaction) of  --  PLD; PLDALPHA1  --  interacts with  --  ATSYP23; SYP23
63 Choline  --  is product (in catalytic reaction) of  --  PLDALPHA4; PLDEPSILON  --  interacts with  --  ICME-LIKE2
64 Choline  --  is transported by  --  AT2G41050  --  interacts with  --  AT1G16170
65 Choline  --  is transported by  --  AT2G41050  --  interacts with  --  AT3G62560
66 Choline  --  is transported by  --  AT2G41050  --  is the target gene of  --  ath-miR779.1
67 Choline  --  is transported by  --  AT2G33220  --  transport  --  Stachydrine
68 Choline  --  is transported by  --  AT2G33220  --  transport  --  Dimethylsulfonioacetate
69 Choline  --  is transported by  --  AT2G33220  --  transport  --  Betaine
70 Choline  --  is transported by  --  AT2G33220  --  transport  --  Carnitine
71 Choline  --  is transported by  --  AT2G33220  --  transport  --  L-Proline
72 Choline  --  is transported by  --  AT2G05940  --  interacts with  --  RIN4
73 Choline  --  is transported by  --  AT2G05940  --  interacts with  --  CYP71B22
74 Choline  --  is transported by  --  AT1G80400  --  transport  --  Polyamine
75 Choline  --  is transported by  --  AT1G80400  --  transport  --  Spermine
76 Choline  --  is transported by  --  AT1G80400  --  transport  --  Thiamine
77 Choline  --  is transported by  --  AT1G80400  --  transport  --  4-Aminobutanoate
78 Choline  --  is transported by  --  AT1G80400  --  transport  --  Spermidine
79 Choline  --  is transported by  --  AT1G80400  --  transport  --  Putrescine
80 Choline  --  is transported by  --  CDPK1A/CPK30  --  interacts with  --  AT2G42390
81 Choline  --  is transported by  --  CDPK1A/CPK30  --  interacts with  --  ABF4/AREB2
82 Choline  --  is transported by  --  CDPK1A/CPK30  --  has similar expression pattern (mutual information value=0.823108) with  --  PTAC/ATUHY1/ATWHY1
83 Choline  --  is transported by  --  CDPK1A/CPK30  --  has similar expression pattern (mutual information value=0.837927) with  --  AT1G06840
84 Choline  --  is transported by  --  CDPK1A/CPK30  --  has similar expression pattern (mutual information value=0.800455) with  --  AT5G46580
85 Choline  --  is transported by  --  CDPK1A/CPK30  --  has similar expression pattern (mutual information value=0.81425) with  --  AT5G59500
86 Choline  --  is transported by  --  CDPK1A/CPK30  --  has similar expression pattern (mutual information value=0.830633) with  --  AT4G14350
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