Screen Resolution:     
Welcome to HRGRN
A Graph Search-Empowered Integrative Database of Arabidopsis Signaling Transduction, Metabolism and Gene Regulation Networks   
Location:  Home > Details for node AT5G41720
Type: Protein GRN ID: np40164 Name:
Annotation: BEST Arabidopsis thaliana protein match is: F-box protein-related (TAIR:AT1G64290.1); Has 70 Blast hits to 70 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 70; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Gene Locus: AT5G41720
Gene Expression (Affy ATH1 probeset): 249262_at    
Graph Customization
   
Choose color for highlight:  
Display edge: validated and predicted
Display node/edge prompt:
Layout:
 as format     
Data Filter
 Protein modification
 Protein-protein interaction
        also include predicted relationship
 Compound-protein interaction
 TF-target gene regulation
 Small RNA-target regulation
        also include predicted relationship
 Carrier and transported molecule
 Catalytic chemical reaction
 Co-expressed gene pair
        with mutual information value >

  Ignore nodes having > relationships
 
Relationship type:  protein modification     catalytic chemical reaction     protein-protein interaction    
compound-protein interaction     TF-target gene regulation     small RNA-target regulation    
co-expressed gene pair     carrier and transported molecule     family/complex and member
Relationship evidence:  Solid line: validated          Dashed line: predicted
Relationship direction: Arrow: positive          T shape: negative          None arrow: unknown or n/a
Hormone association: Thicker line: hormone related relationship         : hormone related Node
Node type:  Transcription factor or transcriptional regulator       Compound       Kinase
 Small regulatory RNA (miRNA & ta-siRNA)       Other nodes
No. Path
2 AT5G41720  --  has similar expression pattern (mutual information value=0.851442) with  --  AT1G09550
3 AT5G41720  --  has similar expression pattern (mutual information value=0.828951) with  --  AT1G53810
4 AT5G41720  --  has similar expression pattern (mutual information value=0.808834) with  --  AT1G36970
5 AT5G41720  --  has similar expression pattern (mutual information value=0.801382) with  --  AT1G72460
6 AT5G41720  --  has similar expression pattern (mutual information value=0.851442) with  --  AT1G09550  --  has similar expression pattern (mutual information value=0.881347) with  --  AT2G02515
7 AT5G41720  --  has similar expression pattern (mutual information value=0.851442) with  --  AT1G09550  --  has similar expression pattern (mutual information value=0.91616) with  --  AT2G06820
8 AT5G41720  --  has similar expression pattern (mutual information value=0.851442) with  --  AT1G09550  --  has similar expression pattern (mutual information value=0.811192) with  --  AT2G12050
9 AT5G41720  --  has similar expression pattern (mutual information value=0.851442) with  --  AT1G09550  --  has similar expression pattern (mutual information value=0.811192) with  --  AT3G31908
10 AT5G41720  --  has similar expression pattern (mutual information value=0.851442) with  --  AT1G09550  --  has similar expression pattern (mutual information value=0.811192) with  --  AT3G32377
11 AT5G41720  --  has similar expression pattern (mutual information value=0.851442) with  --  AT1G09550  --  has similar expression pattern (mutual information value=0.83633) with  --  AT2G11010
12 AT5G41720  --  has similar expression pattern (mutual information value=0.851442) with  --  AT1G09550  --  has similar expression pattern (mutual information value=0.92877) with  --  AT1G31100
13 AT5G41720  --  has similar expression pattern (mutual information value=0.851442) with  --  AT1G09550  --  has similar expression pattern (mutual information value=0.970914) with  --  AT2G16410
14 AT5G41720  --  has similar expression pattern (mutual information value=0.851442) with  --  AT1G09550  --  has similar expression pattern (mutual information value=0.874768) with  --  AT2G20460
15 AT5G41720  --  has similar expression pattern (mutual information value=0.851442) with  --  AT1G09550  --  has similar expression pattern (mutual information value=0.940926) with  --  AT1G36150
16 AT5G41720  --  has similar expression pattern (mutual information value=0.851442) with  --  AT1G09550  --  has similar expression pattern (mutual information value=1.21134) with  --  AT3G27590
17 AT5G41720  --  has similar expression pattern (mutual information value=0.851442) with  --  AT1G09550  --  has similar expression pattern (mutual information value=0.834496) with  --  AT3G30280
18 AT5G41720  --  has similar expression pattern (mutual information value=0.851442) with  --  AT1G09550  --  has similar expression pattern (mutual information value=0.876612) with  --  AT3G19090
19 AT5G41720  --  has similar expression pattern (mutual information value=0.851442) with  --  AT1G09550  --  has similar expression pattern (mutual information value=0.992303) with  --  AT2G33260
20 AT5G41720  --  has similar expression pattern (mutual information value=0.851442) with  --  AT1G09550  --  has similar expression pattern (mutual information value=1.07802) with  --  sks10
21 AT5G41720  --  has similar expression pattern (mutual information value=0.851442) with  --  AT1G09550  --  has similar expression pattern (mutual information value=0.800798) with  --  AT3G42300
22 AT5G41720  --  has similar expression pattern (mutual information value=0.851442) with  --  AT1G09550  --  has similar expression pattern (mutual information value=0.877265) with  --  AT3G42820
23 AT5G41720  --  has similar expression pattern (mutual information value=0.851442) with  --  AT1G09550  --  has similar expression pattern (mutual information value=0.970535) with  --  AT3G42770
24 AT5G41720  --  has similar expression pattern (mutual information value=0.851442) with  --  AT1G09550  --  has similar expression pattern (mutual information value=0.865006) with  --  AT5G53635
25 AT5G41720  --  has similar expression pattern (mutual information value=0.851442) with  --  AT1G09550  --  has similar expression pattern (mutual information value=0.838963) with  --  AT5G66220
26 AT5G41720  --  has similar expression pattern (mutual information value=0.851442) with  --  AT1G09550  --  has similar expression pattern (mutual information value=0.937021) with  --  ASD2; ATASD2
27 AT5G41720  --  has similar expression pattern (mutual information value=0.851442) with  --  AT1G09550  --  has similar expression pattern (mutual information value=0.893527) with  --  AT5G26640
28 AT5G41720  --  has similar expression pattern (mutual information value=0.851442) with  --  AT1G09550  --  has similar expression pattern (mutual information value=0.849338) with  --  AT5G20370
29 AT5G41720  --  has similar expression pattern (mutual information value=0.851442) with  --  AT1G09550  --  has similar expression pattern (mutual information value=0.968075) with  --  AT1G38149
30 AT5G41720  --  has similar expression pattern (mutual information value=0.851442) with  --  AT1G09550  --  has similar expression pattern (mutual information value=0.968075) with  --  AT1G38340
31 AT5G41720  --  has similar expression pattern (mutual information value=0.828951) with  --  AT1G53810  --  has similar expression pattern (mutual information value=0.810541) with  --  AtRLP24; RLP24
32 AT5G41720  --  has similar expression pattern (mutual information value=0.828951) with  --  AT1G53810  --  has similar expression pattern (mutual information value=0.818814) with  --  COBL6
33 AT5G41720  --  has similar expression pattern (mutual information value=0.828951) with  --  AT1G53810  --  has similar expression pattern (mutual information value=0.80646) with  --  AT2G36920
34 AT5G41720  --  has similar expression pattern (mutual information value=0.828951) with  --  AT1G53810  --  has similar expression pattern (mutual information value=0.816204) with  --  AT2G16110
35 AT5G41720  --  has similar expression pattern (mutual information value=0.828951) with  --  AT1G53810  --  has similar expression pattern (mutual information value=0.853238) with  --  AT1G63540
36 AT5G41720  --  has similar expression pattern (mutual information value=0.828951) with  --  AT1G53810  --  has similar expression pattern (mutual information value=0.825553) with  --  ATDGK6; DGK6
37 AT5G41720  --  has similar expression pattern (mutual information value=0.828951) with  --  AT1G53810  --  has similar expression pattern (mutual information value=0.841294) with  --  A7; ATA7
38 AT5G41720  --  has similar expression pattern (mutual information value=0.828951) with  --  AT1G53810  --  has similar expression pattern (mutual information value=0.85801) with  --  AT3G42140
39 AT5G41720  --  has similar expression pattern (mutual information value=0.828951) with  --  AT1G53810  --  has similar expression pattern (mutual information value=0.897898) with  --  AtPP2-B12; PP2-B12
40 AT5G41720  --  has similar expression pattern (mutual information value=0.828951) with  --  AT1G53810  --  has similar expression pattern (mutual information value=0.815448) with  --  AT5G20760
41 AT5G41720  --  has similar expression pattern (mutual information value=0.828951) with  --  AT1G53810  --  has similar expression pattern (mutual information value=0.82139) with  --  AT1G56675
42 AT5G41720  --  has similar expression pattern (mutual information value=0.828951) with  --  AT1G53810  --  has similar expression pattern (mutual information value=0.82139) with  --  AT4G09146
43 AT5G41720  --  has similar expression pattern (mutual information value=0.808834) with  --  AT1G36970  --  has similar expression pattern (mutual information value=0.811285) with  --  AT3G44070
44 AT5G41720  --  has similar expression pattern (mutual information value=0.808834) with  --  AT1G36970  --  has similar expression pattern (mutual information value=0.875865) with  --  AT5G43800
   Funding by the National Science Foundation    Funding by the Oklahoma Center for the Advancement of Science & Technology    Additional funding by the Samuel Roberts Noble Foundation

Copyright © The Zhao Lab

Disclaimer | Contact