Screen Resolution:     
Welcome to HRGRN
A Graph Search-Empowered Integrative Database of Arabidopsis Signaling Transduction, Metabolism and Gene Regulation Networks   
Location:  Home > Details for node AT2G12050
Type: non-coding-other GRN ID: nn01768 Name:
Annotation: pseudogene, embryogenesis protein-related, similar to BABY BOOM (Arabidopsis thaliana) GI:21069057; contains a non-consensus AT-acceptor splice site. This is very likely a pseudogene.; blastp match of 64% identity and 4.6e-09 P-value to GP|21304225|gb|AAL47210.1||AY062179 aintegumenta-like protein {Oryza sativa}
Gene Locus: AT2G12050
Graph Customization
   
Choose color for highlight:  
Display edge: validated and predicted
Display node/edge prompt:
Layout:
 as format     
Data Filter
 Protein modification
 Protein-protein interaction
        also include predicted relationship
 Compound-protein interaction
 TF-target gene regulation
 Small RNA-target regulation
        also include predicted relationship
 Carrier and transported molecule
 Catalytic chemical reaction
 Co-expressed gene pair
        with mutual information value >

  Ignore nodes having > relationships
 
Relationship type:  protein modification     catalytic chemical reaction     protein-protein interaction    
compound-protein interaction     TF-target gene regulation     small RNA-target regulation    
co-expressed gene pair     carrier and transported molecule     family/complex and member
Relationship evidence:  Solid line: validated          Dashed line: predicted
Relationship direction: Arrow: positive          T shape: negative          None arrow: unknown or n/a
Hormone association: Thicker line: hormone related relationship         : hormone related Node
Node type:  Transcription factor or transcriptional regulator       Compound       Kinase
 Small regulatory RNA (miRNA & ta-siRNA)       Other nodes
No. Path
2 AT2G12050  --  has similar expression pattern (mutual information value=0.811192) with  --  AT1G09550
3 AT2G12050  --  has similar expression pattern (mutual information value=0.821261) with  --  AT1G72460
4 AT2G12050  --  has similar expression pattern (mutual information value=0.811192) with  --  AT1G09550  --  has similar expression pattern (mutual information value=0.881347) with  --  AT2G02515
5 AT2G12050  --  has similar expression pattern (mutual information value=0.811192) with  --  AT1G09550  --  has similar expression pattern (mutual information value=0.91616) with  --  AT2G06820
6 AT2G12050  --  has similar expression pattern (mutual information value=0.811192) with  --  AT1G09550  --  has similar expression pattern (mutual information value=0.811192) with  --  AT3G31908
7 AT2G12050  --  has similar expression pattern (mutual information value=0.811192) with  --  AT1G09550  --  has similar expression pattern (mutual information value=0.811192) with  --  AT3G32377
8 AT2G12050  --  has similar expression pattern (mutual information value=0.811192) with  --  AT1G09550  --  has similar expression pattern (mutual information value=0.83633) with  --  AT2G11010
9 AT2G12050  --  has similar expression pattern (mutual information value=0.811192) with  --  AT1G09550  --  has similar expression pattern (mutual information value=0.92877) with  --  AT1G31100
10 AT2G12050  --  has similar expression pattern (mutual information value=0.811192) with  --  AT1G09550  --  has similar expression pattern (mutual information value=0.970914) with  --  AT2G16410
11 AT2G12050  --  has similar expression pattern (mutual information value=0.811192) with  --  AT1G09550  --  has similar expression pattern (mutual information value=0.874768) with  --  AT2G20460
12 AT2G12050  --  has similar expression pattern (mutual information value=0.811192) with  --  AT1G09550  --  has similar expression pattern (mutual information value=0.940926) with  --  AT1G36150
13 AT2G12050  --  has similar expression pattern (mutual information value=0.811192) with  --  AT1G09550  --  has similar expression pattern (mutual information value=0.956163) with  --  AT1G53810
14 AT2G12050  --  has similar expression pattern (mutual information value=0.811192) with  --  AT1G09550  --  has similar expression pattern (mutual information value=1.21134) with  --  AT3G27590
15 AT2G12050  --  has similar expression pattern (mutual information value=0.811192) with  --  AT1G09550  --  has similar expression pattern (mutual information value=0.834496) with  --  AT3G30280
16 AT2G12050  --  has similar expression pattern (mutual information value=0.811192) with  --  AT1G09550  --  has similar expression pattern (mutual information value=0.876612) with  --  AT3G19090
17 AT2G12050  --  has similar expression pattern (mutual information value=0.811192) with  --  AT1G09550  --  has similar expression pattern (mutual information value=0.992303) with  --  AT2G33260
18 AT2G12050  --  has similar expression pattern (mutual information value=0.811192) with  --  AT1G09550  --  has similar expression pattern (mutual information value=1.07802) with  --  sks10
19 AT2G12050  --  has similar expression pattern (mutual information value=0.811192) with  --  AT1G09550  --  has similar expression pattern (mutual information value=0.800798) with  --  AT3G42300
20 AT2G12050  --  has similar expression pattern (mutual information value=0.811192) with  --  AT1G09550  --  has similar expression pattern (mutual information value=0.877265) with  --  AT3G42820
21 AT2G12050  --  has similar expression pattern (mutual information value=0.811192) with  --  AT1G09550  --  has similar expression pattern (mutual information value=0.970535) with  --  AT3G42770
22 AT2G12050  --  has similar expression pattern (mutual information value=0.811192) with  --  AT1G09550  --  has similar expression pattern (mutual information value=0.851442) with  --  AT5G41720
23 AT2G12050  --  has similar expression pattern (mutual information value=0.811192) with  --  AT1G09550  --  has similar expression pattern (mutual information value=0.865006) with  --  AT5G53635
24 AT2G12050  --  has similar expression pattern (mutual information value=0.811192) with  --  AT1G09550  --  has similar expression pattern (mutual information value=0.838963) with  --  AT5G66220
25 AT2G12050  --  has similar expression pattern (mutual information value=0.811192) with  --  AT1G09550  --  has similar expression pattern (mutual information value=0.937021) with  --  ASD2; ATASD2
26 AT2G12050  --  has similar expression pattern (mutual information value=0.811192) with  --  AT1G09550  --  has similar expression pattern (mutual information value=0.893527) with  --  AT5G26640
27 AT2G12050  --  has similar expression pattern (mutual information value=0.811192) with  --  AT1G09550  --  has similar expression pattern (mutual information value=0.849338) with  --  AT5G20370
28 AT2G12050  --  has similar expression pattern (mutual information value=0.811192) with  --  AT1G09550  --  has similar expression pattern (mutual information value=0.968075) with  --  AT1G38149
29 AT2G12050  --  has similar expression pattern (mutual information value=0.811192) with  --  AT1G09550  --  has similar expression pattern (mutual information value=0.968075) with  --  AT1G38340
   Funding by the National Science Foundation    Funding by the Oklahoma Center for the Advancement of Science & Technology    Additional funding by the Samuel Roberts Noble Foundation

Copyright © The Zhao Lab

Disclaimer | Contact