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A Graph Search-Empowered Integrative Database of Arabidopsis Signaling Transduction, Metabolism and Gene Regulation Networks   
Location:  Home > Details for node AT4G12340
Type: Protein GRN ID: np33432 Name:
Annotation: copper ion binding
Gene Locus: AT4G12340
Gene Expression (Affy ATH1 probeset): 254814_at    
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 Protein modification
 Protein-protein interaction
        also include predicted relationship
 Compound-protein interaction
 TF-target gene regulation
 Small RNA-target regulation
        also include predicted relationship
 Carrier and transported molecule
 Catalytic chemical reaction
 Co-expressed gene pair
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Relationship type:  protein modification     catalytic chemical reaction     protein-protein interaction    
compound-protein interaction     TF-target gene regulation     small RNA-target regulation    
co-expressed gene pair     carrier and transported molecule     family/complex and member
Relationship evidence:  Solid line: validated          Dashed line: predicted
Relationship direction: Arrow: positive          T shape: negative          None arrow: unknown or n/a
Hormone association: Thicker line: hormone related relationship         : hormone related Node
Node type:  Transcription factor or transcriptional regulator       Compound       Kinase
 Small regulatory RNA (miRNA & ta-siRNA)       Other nodes
No. Path
2 AT4G12340  --  has similar expression pattern (mutual information value=0.802981) with  --  AT1G80790
3 AT4G12340  --  has similar expression pattern (mutual information value=0.818136) with  --  AT3G19650
4 AT4G12340  --  has similar expression pattern (mutual information value=0.802981) with  --  AT1G80790  --  has similar expression pattern (mutual information value=0.919108) with  --  AT2G40650
5 AT4G12340  --  has similar expression pattern (mutual information value=0.802981) with  --  AT1G80790  --  has similar expression pattern (mutual information value=0.853758) with  --  AT1G09660
6 AT4G12340  --  has similar expression pattern (mutual information value=0.802981) with  --  AT1G80790  --  has similar expression pattern (mutual information value=0.872142) with  --  AT1G79200
7 AT4G12340  --  has similar expression pattern (mutual information value=0.802981) with  --  AT1G80790  --  has similar expression pattern (mutual information value=0.851958) with  --  AT1G15910
8 AT4G12340  --  has similar expression pattern (mutual information value=0.802981) with  --  AT1G80790  --  has similar expression pattern (mutual information value=0.884019) with  --  CHR11
9 AT4G12340  --  has similar expression pattern (mutual information value=0.802981) with  --  AT1G80790  --  has similar expression pattern (mutual information value=0.907839) with  --  HAT3.1
10 AT4G12340  --  has similar expression pattern (mutual information value=0.802981) with  --  AT1G80790  --  has similar expression pattern (mutual information value=0.856027) with  --  AT5G55660
11 AT4G12340  --  has similar expression pattern (mutual information value=0.802981) with  --  AT1G80790  --  has similar expression pattern (mutual information value=0.977165) with  --  AT5G04320
12 AT4G12340  --  has similar expression pattern (mutual information value=0.802981) with  --  AT1G80790  --  transport  --  Gentamicin
13 AT4G12340  --  has similar expression pattern (mutual information value=0.818136) with  --  AT3G19650  --  has similar expression pattern (mutual information value=1.11367) with  --  AT2G16860
14 AT4G12340  --  has similar expression pattern (mutual information value=0.818136) with  --  AT3G19650  --  has similar expression pattern (mutual information value=1.01922) with  --  ATIPT2
15 AT4G12340  --  has similar expression pattern (mutual information value=0.818136) with  --  AT3G19650  --  has similar expression pattern (mutual information value=0.801271) with  --  ELF8; VIP6
16 AT4G12340  --  has similar expression pattern (mutual information value=0.818136) with  --  AT3G19650  --  has similar expression pattern (mutual information value=0.809416) with  --  AT1G77170
17 AT4G12340  --  has similar expression pattern (mutual information value=0.818136) with  --  AT3G19650  --  has similar expression pattern (mutual information value=0.809416) with  --  AT1G77150
18 AT4G12340  --  has similar expression pattern (mutual information value=0.818136) with  --  AT3G19650  --  has similar expression pattern (mutual information value=0.904166) with  --  AT1G15200
19 AT4G12340  --  has similar expression pattern (mutual information value=0.818136) with  --  AT3G19650  --  has similar expression pattern (mutual information value=0.917181) with  --  ATPRP40A; PRP40A
20 AT4G12340  --  has similar expression pattern (mutual information value=0.818136) with  --  AT3G19650  --  has similar expression pattern (mutual information value=0.992778) with  --  NF-YC10
21 AT4G12340  --  has similar expression pattern (mutual information value=0.818136) with  --  AT3G19650  --  has similar expression pattern (mutual information value=1.11918) with  --  CRWN3; LINC3
22 AT4G12340  --  has similar expression pattern (mutual information value=0.818136) with  --  AT3G19650  --  has similar expression pattern (mutual information value=0.958397) with  --  ATPC2
23 AT4G12340  --  has similar expression pattern (mutual information value=0.818136) with  --  AT3G19650  --  has similar expression pattern (mutual information value=0.909915) with  --  CDC48C; emb1354
24 AT4G12340  --  has similar expression pattern (mutual information value=0.818136) with  --  AT3G19650  --  has similar expression pattern (mutual information value=0.940396) with  --  AT3G09360
25 AT4G12340  --  has similar expression pattern (mutual information value=0.818136) with  --  AT3G19650  --  has similar expression pattern (mutual information value=0.824699) with  --  AT3G02400
26 AT4G12340  --  has similar expression pattern (mutual information value=0.818136) with  --  AT3G19650  --  has similar expression pattern (mutual information value=0.905843) with  --  AT2G34040
27 AT4G12340  --  has similar expression pattern (mutual information value=0.818136) with  --  AT3G19650  --  has similar expression pattern (mutual information value=0.852354) with  --  AT4G08460
28 AT4G12340  --  has similar expression pattern (mutual information value=0.818136) with  --  AT3G19650  --  has similar expression pattern (mutual information value=0.953012) with  --  AT4G39160
29 AT4G12340  --  has similar expression pattern (mutual information value=0.818136) with  --  AT3G19650  --  has similar expression pattern (mutual information value=0.970791) with  --  AT3G51270
30 AT4G12340  --  has similar expression pattern (mutual information value=0.818136) with  --  AT3G19650  --  has similar expression pattern (mutual information value=0.878592) with  --  ATFIP37; FIP37
31 AT4G12340  --  has similar expression pattern (mutual information value=0.818136) with  --  AT3G19650  --  has similar expression pattern (mutual information value=0.81049) with  --  AT5G14820
32 AT4G12340  --  has similar expression pattern (mutual information value=0.818136) with  --  AT3G19650  --  has similar expression pattern (mutual information value=0.81049) with  --  AT3G62540
33 AT4G12340  --  has similar expression pattern (mutual information value=0.818136) with  --  AT3G19650  --  has similar expression pattern (mutual information value=0.81049) with  --  AT3G62470
34 AT4G12340  --  has similar expression pattern (mutual information value=0.818136) with  --  AT3G19650  --  has similar expression pattern (mutual information value=0.91572) with  --  AT5G11760
35 AT4G12340  --  has similar expression pattern (mutual information value=0.818136) with  --  AT3G19650  --  has similar expression pattern (mutual information value=0.923128) with  --  AT5G14440
36 AT4G12340  --  has similar expression pattern (mutual information value=0.818136) with  --  AT3G19650  --  has similar expression pattern (mutual information value=0.958149) with  --  AT5G50020
37 AT4G12340  --  has similar expression pattern (mutual information value=0.818136) with  --  AT3G19650  --  has similar expression pattern (mutual information value=0.828931) with  --  MEF1
38 AT4G12340  --  has similar expression pattern (mutual information value=0.818136) with  --  AT3G19650  --  has similar expression pattern (mutual information value=1.24632) with  --  AT5G53800
39 AT4G12340  --  has similar expression pattern (mutual information value=0.818136) with  --  AT3G19650  --  has similar expression pattern (mutual information value=1.09545) with  --  AT1G48900
40 AT4G12340  --  has similar expression pattern (mutual information value=0.818136) with  --  AT3G19650  --  has similar expression pattern (mutual information value=0.842522) with  --  AT5G16950
41 AT4G12340  --  has similar expression pattern (mutual information value=0.818136) with  --  AT3G19650  --  has similar expression pattern (mutual information value=1.03325) with  --  SMU2
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