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A Graph Search-Empowered Integrative Database of Arabidopsis Signaling Transduction, Metabolism and Gene Regulation Networks   
Location:  Home > Details for node AT3G62540
Type: Protein GRN ID: np29402 Name:
Annotation: Pentatricopeptide repeat (PPR) superfamily protein
Gene Locus: AT3G62540
Gene Expression (Affy ATH1 probeset): 251211_s_at    
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 Protein modification
 Protein-protein interaction
        also include predicted relationship
 Compound-protein interaction
 TF-target gene regulation
 Small RNA-target regulation
        also include predicted relationship
 Carrier and transported molecule
 Catalytic chemical reaction
 Co-expressed gene pair
        with mutual information value >

  Ignore nodes having > relationships
 
Relationship type:  protein modification     catalytic chemical reaction     protein-protein interaction    
compound-protein interaction     TF-target gene regulation     small RNA-target regulation    
co-expressed gene pair     carrier and transported molecule     family/complex and member
Relationship evidence:  Solid line: validated          Dashed line: predicted
Relationship direction: Arrow: positive          T shape: negative          None arrow: unknown or n/a
Hormone association: Thicker line: hormone related relationship         : hormone related Node
Node type:  Transcription factor or transcriptional regulator       Compound       Kinase
 Small regulatory RNA (miRNA & ta-siRNA)       Other nodes
No. Path
2 AT3G62540  --  has similar expression pattern (mutual information value=0.837904) with  --  ATIPT2
3 AT3G62540  --  has similar expression pattern (mutual information value=0.846148) with  --  AT1G55460
4 AT3G62540  --  has similar expression pattern (mutual information value=0.803637) with  --  AT1G55930
5 AT3G62540  --  has similar expression pattern (mutual information value=0.81049) with  --  AT3G19650
6 AT3G62540  --  has similar expression pattern (mutual information value=0.83821) with  --  AT5G53800
7 AT3G62540  --  has similar expression pattern (mutual information value=0.837904) with  --  ATIPT2  --  has similar expression pattern (mutual information value=0.986746) with  --  AT2G44200
8 AT3G62540  --  has similar expression pattern (mutual information value=0.837904) with  --  ATIPT2  --  has similar expression pattern (mutual information value=0.939042) with  --  AT2G16860
9 AT3G62540  --  has similar expression pattern (mutual information value=0.837904) with  --  ATIPT2  --  has similar expression pattern (mutual information value=0.871018) with  --  ATMAP70-3; MAP70-3
10 AT3G62540  --  has similar expression pattern (mutual information value=0.837904) with  --  ATIPT2  --  has similar expression pattern (mutual information value=1.00144) with  --  AT1G15200
11 AT3G62540  --  has similar expression pattern (mutual information value=0.837904) with  --  ATIPT2  --  has similar expression pattern (mutual information value=0.922764) with  --  ATPRP40C; PRP40C
12 AT3G62540  --  has similar expression pattern (mutual information value=0.837904) with  --  ATIPT2  --  has similar expression pattern (mutual information value=0.9656) with  --  EIF4B1
13 AT3G62540  --  has similar expression pattern (mutual information value=0.837904) with  --  ATIPT2  --  has similar expression pattern (mutual information value=0.848508) with  --  CPK33
14 AT3G62540  --  has similar expression pattern (mutual information value=0.837904) with  --  ATIPT2  --  has similar expression pattern (mutual information value=0.8037) with  --  AT4G32450
15 AT3G62540  --  has similar expression pattern (mutual information value=0.837904) with  --  ATIPT2  --  has similar expression pattern (mutual information value=1.0754) with  --  AT4G39160
16 AT3G62540  --  has similar expression pattern (mutual information value=0.837904) with  --  ATIPT2  --  has similar expression pattern (mutual information value=0.898424) with  --  ATFIP37; FIP37
17 AT3G62540  --  has similar expression pattern (mutual information value=0.837904) with  --  ATIPT2  --  has similar expression pattern (mutual information value=0.837904) with  --  AT5G14820
18 AT3G62540  --  has similar expression pattern (mutual information value=0.837904) with  --  ATIPT2  --  has similar expression pattern (mutual information value=0.837904) with  --  AT3G62470
19 AT3G62540  --  has similar expression pattern (mutual information value=0.837904) with  --  ATIPT2  --  has similar expression pattern (mutual information value=0.890954) with  --  ATO
20 AT3G62540  --  has similar expression pattern (mutual information value=0.837904) with  --  ATIPT2  --  has similar expression pattern (mutual information value=0.850065) with  --  AT5G08630
21 AT3G62540  --  has similar expression pattern (mutual information value=0.837904) with  --  ATIPT2  --  has similar expression pattern (mutual information value=0.808905) with  --  ABO1; AtELP1; ELO2
22 AT3G62540  --  has similar expression pattern (mutual information value=0.837904) with  --  ATIPT2  --  has similar expression pattern (mutual information value=1.17959) with  --  AT1G31870
23 AT3G62540  --  has similar expression pattern (mutual information value=0.837904) with  --  ATIPT2  --  has similar expression pattern (mutual information value=0.958508) with  --  SMP2
24 AT3G62540  --  has similar expression pattern (mutual information value=0.837904) with  --  ATIPT2  --  has similar expression pattern (mutual information value=0.97862) with  --  FAR1
25 AT3G62540  --  has similar expression pattern (mutual information value=0.846148) with  --  AT1G55460  --  interacts with  --  ATSPL7; SPL7
26 AT3G62540  --  has similar expression pattern (mutual information value=0.846148) with  --  AT1G55460  --  interacts with  --  AT4G00980
27 AT3G62540  --  has similar expression pattern (mutual information value=0.846148) with  --  AT1G55460  --  has similar expression pattern (mutual information value=0.873786) with  --  AT1G48900
28 AT3G62540  --  has similar expression pattern (mutual information value=0.803637) with  --  AT1G55930  --  transport  --  UDP-D-xylose
29 AT3G62540  --  has similar expression pattern (mutual information value=0.803637) with  --  AT1G55930  --  transport  --  UMP
30 AT3G62540  --  has similar expression pattern (mutual information value=0.803637) with  --  AT1G55930  --  transport  --  UDP-alpha-D-galactose
31 AT3G62540  --  has similar expression pattern (mutual information value=0.803637) with  --  AT1G55930  --  transport  --  UDP-N-acetyl-alpha-D-glucosamine
32 AT3G62540  --  has similar expression pattern (mutual information value=0.803637) with  --  AT1G55930  --  has similar expression pattern (mutual information value=0.824855) with  --  CDC48C; emb1354
33 AT3G62540  --  has similar expression pattern (mutual information value=0.81049) with  --  AT3G19650  --  has similar expression pattern (mutual information value=0.931575) with  --  AT2G40650
34 AT3G62540  --  has similar expression pattern (mutual information value=0.81049) with  --  AT3G19650  --  has similar expression pattern (mutual information value=0.801271) with  --  ELF8; VIP6
35 AT3G62540  --  has similar expression pattern (mutual information value=0.81049) with  --  AT3G19650  --  has similar expression pattern (mutual information value=0.858356) with  --  AT1G09660
36 AT3G62540  --  has similar expression pattern (mutual information value=0.81049) with  --  AT3G19650  --  has similar expression pattern (mutual information value=0.809416) with  --  AT1G77170
37 AT3G62540  --  has similar expression pattern (mutual information value=0.81049) with  --  AT3G19650  --  has similar expression pattern (mutual information value=0.809416) with  --  AT1G77150
38 AT3G62540  --  has similar expression pattern (mutual information value=0.81049) with  --  AT3G19650  --  has similar expression pattern (mutual information value=0.928883) with  --  AT1G79200
39 AT3G62540  --  has similar expression pattern (mutual information value=0.81049) with  --  AT3G19650  --  has similar expression pattern (mutual information value=1.12696) with  --  AT1G80790
40 AT3G62540  --  has similar expression pattern (mutual information value=0.81049) with  --  AT3G19650  --  has similar expression pattern (mutual information value=0.901681) with  --  AT1G15910
41 AT3G62540  --  has similar expression pattern (mutual information value=0.81049) with  --  AT3G19650  --  has similar expression pattern (mutual information value=0.901681) with  --  AT4G00380
42 AT3G62540  --  has similar expression pattern (mutual information value=0.81049) with  --  AT3G19650  --  has similar expression pattern (mutual information value=0.917181) with  --  ATPRP40A; PRP40A
43 AT3G62540  --  has similar expression pattern (mutual information value=0.81049) with  --  AT3G19650  --  has similar expression pattern (mutual information value=0.992778) with  --  NF-YC10
44 AT3G62540  --  has similar expression pattern (mutual information value=0.81049) with  --  AT3G19650  --  has similar expression pattern (mutual information value=1.11918) with  --  CRWN3; LINC3
45 AT3G62540  --  has similar expression pattern (mutual information value=0.81049) with  --  AT3G19650  --  has similar expression pattern (mutual information value=0.958397) with  --  ATPC2
46 AT3G62540  --  has similar expression pattern (mutual information value=0.81049) with  --  AT3G19650  --  has similar expression pattern (mutual information value=0.940396) with  --  AT3G09360
47 AT3G62540  --  has similar expression pattern (mutual information value=0.81049) with  --  AT3G19650  --  has similar expression pattern (mutual information value=0.824699) with  --  AT3G02400
48 AT3G62540  --  has similar expression pattern (mutual information value=0.81049) with  --  AT3G19650  --  has similar expression pattern (mutual information value=0.905843) with  --  AT2G34040
49 AT3G62540  --  has similar expression pattern (mutual information value=0.81049) with  --  AT3G19650  --  has similar expression pattern (mutual information value=0.852354) with  --  AT4G08460
50 AT3G62540  --  has similar expression pattern (mutual information value=0.81049) with  --  AT3G19650  --  has similar expression pattern (mutual information value=0.818136) with  --  AT4G12340
51 AT3G62540  --  has similar expression pattern (mutual information value=0.81049) with  --  AT3G19650  --  has similar expression pattern (mutual information value=0.970791) with  --  AT3G51270
52 AT3G62540  --  has similar expression pattern (mutual information value=0.81049) with  --  AT3G19650  --  has similar expression pattern (mutual information value=0.91572) with  --  AT5G11760
53 AT3G62540  --  has similar expression pattern (mutual information value=0.81049) with  --  AT3G19650  --  has similar expression pattern (mutual information value=0.923128) with  --  AT5G14440
54 AT3G62540  --  has similar expression pattern (mutual information value=0.81049) with  --  AT3G19650  --  has similar expression pattern (mutual information value=0.958149) with  --  AT5G50020
55 AT3G62540  --  has similar expression pattern (mutual information value=0.81049) with  --  AT3G19650  --  has similar expression pattern (mutual information value=0.828931) with  --  MEF1
56 AT3G62540  --  has similar expression pattern (mutual information value=0.81049) with  --  AT3G19650  --  has similar expression pattern (mutual information value=0.842522) with  --  AT5G16950
57 AT3G62540  --  has similar expression pattern (mutual information value=0.81049) with  --  AT3G19650  --  has similar expression pattern (mutual information value=1.03325) with  --  SMU2
58 AT3G62540  --  has similar expression pattern (mutual information value=0.83821) with  --  AT5G53800  --  has similar expression pattern (mutual information value=0.871175) with  --  AT2G38420
59 AT3G62540  --  has similar expression pattern (mutual information value=0.83821) with  --  AT5G53800  --  has similar expression pattern (mutual information value=1.11856) with  --  AT1G60900
60 AT3G62540  --  has similar expression pattern (mutual information value=0.83821) with  --  AT5G53800  --  has similar expression pattern (mutual information value=1.11856) with  --  AT1G60830
61 AT3G62540  --  has similar expression pattern (mutual information value=0.83821) with  --  AT5G53800  --  has similar expression pattern (mutual information value=0.817885) with  --  AT1G06530
62 AT3G62540  --  has similar expression pattern (mutual information value=0.83821) with  --  AT5G53800  --  has similar expression pattern (mutual information value=1.07517) with  --  AT1G32630
63 AT3G62540  --  has similar expression pattern (mutual information value=0.83821) with  --  AT5G53800  --  has similar expression pattern (mutual information value=1.07791) with  --  AT1G02330
64 AT3G62540  --  has similar expression pattern (mutual information value=0.83821) with  --  AT5G53800  --  has similar expression pattern (mutual information value=0.989416) with  --  HAT3.1
65 AT3G62540  --  has similar expression pattern (mutual information value=0.83821) with  --  AT5G53800  --  has similar expression pattern (mutual information value=0.991438) with  --  AT3G19630
66 AT3G62540  --  has similar expression pattern (mutual information value=0.83821) with  --  AT5G53800  --  has similar expression pattern (mutual information value=0.802347) with  --  AT1G29850
67 AT3G62540  --  has similar expression pattern (mutual information value=0.83821) with  --  AT5G53800  --  has similar expression pattern (mutual information value=0.841087) with  --  AT4G17960
68 AT3G62540  --  has similar expression pattern (mutual information value=0.83821) with  --  AT5G53800  --  has similar expression pattern (mutual information value=1.17411) with  --  AT4G22350
69 AT3G62540  --  has similar expression pattern (mutual information value=0.83821) with  --  AT5G53800  --  has similar expression pattern (mutual information value=1.17411) with  --  AT4G22285
70 AT3G62540  --  has similar expression pattern (mutual information value=0.83821) with  --  AT5G53800  --  has similar expression pattern (mutual information value=1.05274) with  --  GAUT3
71 AT3G62540  --  has similar expression pattern (mutual information value=0.83821) with  --  AT5G53800  --  has similar expression pattern (mutual information value=0.812928) with  --  AT3G44690
72 AT3G62540  --  has similar expression pattern (mutual information value=0.83821) with  --  AT5G53800  --  has similar expression pattern (mutual information value=0.988789) with  --  AT3G48120
73 AT3G62540  --  has similar expression pattern (mutual information value=0.83821) with  --  AT5G53800  --  has similar expression pattern (mutual information value=0.856852) with  --  DEI1; PAS1
74 AT3G62540  --  has similar expression pattern (mutual information value=0.83821) with  --  AT5G53800  --  has similar expression pattern (mutual information value=0.937573) with  --  AT5G18950
75 AT3G62540  --  has similar expression pattern (mutual information value=0.83821) with  --  AT5G53800  --  has similar expression pattern (mutual information value=1.3173) with  --  ATGSTT2; GST10B; GSTT2
76 AT3G62540  --  has similar expression pattern (mutual information value=0.83821) with  --  AT5G53800  --  has similar expression pattern (mutual information value=1.3173) with  --  ATGSTT3; GST10C; GSTT3
77 AT3G62540  --  has similar expression pattern (mutual information value=0.83821) with  --  AT5G53800  --  has similar expression pattern (mutual information value=1.04224) with  --  ATCBP20
78 AT3G62540  --  has similar expression pattern (mutual information value=0.83821) with  --  AT5G53800  --  has similar expression pattern (mutual information value=0.964844) with  --  AT5G49000
79 AT3G62540  --  has similar expression pattern (mutual information value=0.83821) with  --  AT5G53800  --  has similar expression pattern (mutual information value=1.02797) with  --  AT5G19960
80 AT3G62540  --  has similar expression pattern (mutual information value=0.83821) with  --  AT5G53800  --  has similar expression pattern (mutual information value=0.889499) with  --  AT4G17010
81 AT3G62540  --  has similar expression pattern (mutual information value=0.83821) with  --  AT5G53800  --  interacts with  --  AT5G27860
82 AT3G62540  --  has similar expression pattern (mutual information value=0.83821) with  --  AT5G53800  --  interacts with  --  AT4G33690
83 AT3G62540  --  has similar expression pattern (mutual information value=0.83821) with  --  AT5G53800  --  interacts with  --  AT2G43370
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