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A Graph Search-Empowered Integrative Database of Arabidopsis Signaling Transduction, Metabolism and Gene Regulation Networks   
Location:  Home > Details for node AT5G55660
Type: Protein GRN ID: np42048 Name:
Annotation: DEK domain-containing chromatin associated protein
Gene Locus: AT5G55660
Gene Expression (Affy ATH1 probeset): 248070_at    
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 Protein modification
 Protein-protein interaction
        also include predicted relationship
 Compound-protein interaction
 TF-target gene regulation
 Small RNA-target regulation
        also include predicted relationship
 Carrier and transported molecule
 Catalytic chemical reaction
 Co-expressed gene pair
        with mutual information value >

  Ignore nodes having > relationships
 
Relationship type:  protein modification     catalytic chemical reaction     protein-protein interaction    
compound-protein interaction     TF-target gene regulation     small RNA-target regulation    
co-expressed gene pair     carrier and transported molecule     family/complex and member
Relationship evidence:  Solid line: validated          Dashed line: predicted
Relationship direction: Arrow: positive          T shape: negative          None arrow: unknown or n/a
Hormone association: Thicker line: hormone related relationship         : hormone related Node
Node type:  Transcription factor or transcriptional regulator       Compound       Kinase
 Small regulatory RNA (miRNA & ta-siRNA)       Other nodes
No. Path
2 AT5G55660  --  is the target gene of  --  ath-miR5654-3p
3 AT5G55660  --  has similar expression pattern (mutual information value=0.856027) with  --  AT1G80790
4 AT5G55660  --  is the target gene of  --  ath-miR5654-3p  --  inhibit the expression of  --  AT5G60060
5 AT5G55660  --  is the target gene of  --  ath-miR5654-3p  --  inhibit the expression of  --  DAU1
6 AT5G55660  --  is the target gene of  --  ath-miR5654-3p  --  inhibit the expression of  --  ATISU1; ISU1
7 AT5G55660  --  is the target gene of  --  ath-miR5654-3p  --  inhibit the expression of  --  RBK2
8 AT5G55660  --  is the target gene of  --  ath-miR5654-3p  --  inhibit the expression of  --  AT2G39725
9 AT5G55660  --  is the target gene of  --  ath-miR5654-3p  --  inhibit the expression of  --  SS3
10 AT5G55660  --  has similar expression pattern (mutual information value=0.856027) with  --  AT1G80790  --  has similar expression pattern (mutual information value=0.919108) with  --  AT2G40650
11 AT5G55660  --  has similar expression pattern (mutual information value=0.856027) with  --  AT1G80790  --  has similar expression pattern (mutual information value=0.853758) with  --  AT1G09660
12 AT5G55660  --  has similar expression pattern (mutual information value=0.856027) with  --  AT1G80790  --  has similar expression pattern (mutual information value=0.872142) with  --  AT1G79200
13 AT5G55660  --  has similar expression pattern (mutual information value=0.856027) with  --  AT1G80790  --  has similar expression pattern (mutual information value=0.851958) with  --  AT1G15910
14 AT5G55660  --  has similar expression pattern (mutual information value=0.856027) with  --  AT1G80790  --  has similar expression pattern (mutual information value=0.884019) with  --  CHR11
15 AT5G55660  --  has similar expression pattern (mutual information value=0.856027) with  --  AT1G80790  --  has similar expression pattern (mutual information value=0.907839) with  --  HAT3.1
16 AT5G55660  --  has similar expression pattern (mutual information value=0.856027) with  --  AT1G80790  --  has similar expression pattern (mutual information value=1.12696) with  --  AT3G19650
17 AT5G55660  --  has similar expression pattern (mutual information value=0.856027) with  --  AT1G80790  --  has similar expression pattern (mutual information value=0.802981) with  --  AT4G12340
18 AT5G55660  --  has similar expression pattern (mutual information value=0.856027) with  --  AT1G80790  --  has similar expression pattern (mutual information value=0.977165) with  --  AT5G04320
19 AT5G55660  --  has similar expression pattern (mutual information value=0.856027) with  --  AT1G80790  --  transport  --  Gentamicin
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