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A Graph Search-Empowered Integrative Database of Arabidopsis Signaling Transduction, Metabolism and Gene Regulation Networks   
Location:  Home > Details for node AT3G06480
Type: Protein GRN ID: np29140 Name:
Annotation: DEAD box RNA helicase family protein [TCDB:9.A.5.1] [EC:3.6.4.13]
Gene Locus: AT3G06480
Gene Expression (Affy ATH1 probeset): 258910_at    
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 Protein modification
 Protein-protein interaction
        also include predicted relationship
 Compound-protein interaction
 TF-target gene regulation
 Small RNA-target regulation
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 Carrier and transported molecule
 Catalytic chemical reaction
 Co-expressed gene pair
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Relationship type:  protein modification     catalytic chemical reaction     protein-protein interaction    
compound-protein interaction     TF-target gene regulation     small RNA-target regulation    
co-expressed gene pair     carrier and transported molecule     family/complex and member
Relationship evidence:  Solid line: validated          Dashed line: predicted
Relationship direction: Arrow: positive          T shape: negative          None arrow: unknown or n/a
Hormone association: Thicker line: hormone related relationship         : hormone related Node
Node type:  Transcription factor or transcriptional regulator       Compound       Kinase
 Small regulatory RNA (miRNA & ta-siRNA)       Other nodes
No. Path
2 AT3G06480  --  has similar expression pattern (mutual information value=0.903624) with  --  AT2G02160
3 AT3G06480  --  has similar expression pattern (mutual information value=0.929835) with  --  SPT16
4 AT3G06480  --  has similar expression pattern (mutual information value=0.83998) with  --  AT5G42940
5 AT3G06480  --  has similar expression pattern (mutual information value=0.808584) with  --  AT5G52530
6 AT3G06480  --  has similar expression pattern (mutual information value=0.83219) with  --  AT5G55670
7 AT3G06480  --  has similar expression pattern (mutual information value=0.977464) with  --  AT5G17440
8 AT3G06480  --  has similar expression pattern (mutual information value=0.889073) with  --  AT5G19950
9 AT3G06480  --  has similar expression pattern (mutual information value=0.903624) with  --  AT2G02160  --  has similar expression pattern (mutual information value=0.886416) with  --  AT2G39260
10 AT3G06480  --  has similar expression pattern (mutual information value=0.903624) with  --  AT2G02160  --  has similar expression pattern (mutual information value=0.827551) with  --  AT2G40650
11 AT3G06480  --  has similar expression pattern (mutual information value=0.903624) with  --  AT2G02160  --  has similar expression pattern (mutual information value=0.841161) with  --  ATRING1B; RING1B
12 AT3G06480  --  has similar expression pattern (mutual information value=0.903624) with  --  AT2G02160  --  has similar expression pattern (mutual information value=0.839425) with  --  SKIP
13 AT3G06480  --  has similar expression pattern (mutual information value=0.903624) with  --  AT2G02160  --  has similar expression pattern (mutual information value=1.08875) with  --  MBD10
14 AT3G06480  --  has similar expression pattern (mutual information value=0.903624) with  --  AT2G02160  --  has similar expression pattern (mutual information value=0.848252) with  --  FRS8
15 AT3G06480  --  has similar expression pattern (mutual information value=0.903624) with  --  AT2G02160  --  has similar expression pattern (mutual information value=1.04345) with  --  ATPC2
16 AT3G06480  --  has similar expression pattern (mutual information value=0.903624) with  --  AT2G02160  --  has similar expression pattern (mutual information value=0.918621) with  --  AT4G17950
17 AT3G06480  --  has similar expression pattern (mutual information value=0.903624) with  --  AT2G02160  --  has similar expression pattern (mutual information value=1.02121) with  --  AT3G47610
18 AT3G06480  --  has similar expression pattern (mutual information value=0.903624) with  --  AT2G02160  --  has similar expression pattern (mutual information value=0.989719) with  --  AT5G13560
19 AT3G06480  --  has similar expression pattern (mutual information value=0.903624) with  --  AT2G02160  --  has similar expression pattern (mutual information value=1.03669) with  --  TGH
20 AT3G06480  --  has similar expression pattern (mutual information value=0.903624) with  --  AT2G02160  --  has similar expression pattern (mutual information value=0.875825) with  --  AT5G46840
21 AT3G06480  --  has similar expression pattern (mutual information value=0.903624) with  --  AT2G02160  --  has similar expression pattern (mutual information value=0.957516) with  --  AT5G47090
22 AT3G06480  --  has similar expression pattern (mutual information value=0.903624) with  --  AT2G02160  --  has similar expression pattern (mutual information value=1.07271) with  --  At-RS41; ATRSP41; RS41
23 AT3G06480  --  has similar expression pattern (mutual information value=0.903624) with  --  AT2G02160  --  has similar expression pattern (mutual information value=0.934735) with  --  ELF9
24 AT3G06480  --  has similar expression pattern (mutual information value=0.903624) with  --  AT2G02160  --  has similar expression pattern (mutual information value=1.04687) with  --  DOT2; MDF
25 AT3G06480  --  has similar expression pattern (mutual information value=0.929835) with  --  SPT16  --  has similar expression pattern (mutual information value=1.08017) with  --  AT1G15940
26 AT3G06480  --  has similar expression pattern (mutual information value=0.929835) with  --  SPT16  --  has similar expression pattern (mutual information value=1.09903) with  --  ATCUL3B; CUL3B
27 AT3G06480  --  has similar expression pattern (mutual information value=0.929835) with  --  SPT16  --  has similar expression pattern (mutual information value=0.801535) with  --  AT5G46070
28 AT3G06480  --  has similar expression pattern (mutual information value=0.929835) with  --  SPT16  --  has similar expression pattern (mutual information value=0.872019) with  --  AT5G25060
29 AT3G06480  --  has similar expression pattern (mutual information value=0.929835) with  --  SPT16  --  has similar expression pattern (mutual information value=0.897032) with  --  ATRAD21.3; SYN4
30 AT3G06480  --  has similar expression pattern (mutual information value=0.83998) with  --  AT5G42940  --  interacts with  --  ANAC019; NAC019
31 AT3G06480  --  has similar expression pattern (mutual information value=0.83998) with  --  AT5G42940  --  interacts with  --  UBC9
32 AT3G06480  --  has similar expression pattern (mutual information value=0.83998) with  --  AT5G42940  --  interacts with  --  AT1G27690
33 AT3G06480  --  has similar expression pattern (mutual information value=0.83998) with  --  AT5G42940  --  interacts with  --  IMPA-2
34 AT3G06480  --  has similar expression pattern (mutual information value=0.83998) with  --  AT5G42940  --  interacts with  --  ATUBC11; UBC11
35 AT3G06480  --  has similar expression pattern (mutual information value=0.83998) with  --  AT5G42940  --  has similar expression pattern (mutual information value=0.826531) with  --  AtbZIP16; bZIP16
36 AT3G06480  --  has similar expression pattern (mutual information value=0.83998) with  --  AT5G42940  --  has similar expression pattern (mutual information value=0.80607) with  --  ATPSKR1; PSKR1
37 AT3G06480  --  has similar expression pattern (mutual information value=0.83998) with  --  AT5G42940  --  has similar expression pattern (mutual information value=0.945569) with  --  AT2G18090
38 AT3G06480  --  has similar expression pattern (mutual information value=0.83998) with  --  AT5G42940  --  has similar expression pattern (mutual information value=1.09711) with  --  SCL5
39 AT3G06480  --  has similar expression pattern (mutual information value=0.83998) with  --  AT5G42940  --  has similar expression pattern (mutual information value=0.908448) with  --  ANAC050; NAC050
40 AT3G06480  --  has similar expression pattern (mutual information value=0.83998) with  --  AT5G42940  --  has similar expression pattern (mutual information value=0.908448) with  --  ANAC051; ANAC052; NAC052
41 AT3G06480  --  has similar expression pattern (mutual information value=0.83998) with  --  AT5G42940  --  has similar expression pattern (mutual information value=0.811929) with  --  ATELC; ELC
42 AT3G06480  --  has similar expression pattern (mutual information value=0.83998) with  --  AT5G42940  --  has similar expression pattern (mutual information value=0.955491) with  --  AT3G47940
43 AT3G06480  --  has similar expression pattern (mutual information value=0.83998) with  --  AT5G42940  --  has similar expression pattern (mutual information value=0.902692) with  --  AT3G62240
44 AT3G06480  --  has similar expression pattern (mutual information value=0.83998) with  --  AT5G42940  --  has similar expression pattern (mutual information value=0.843516) with  --  AT3G63500
45 AT3G06480  --  has similar expression pattern (mutual information value=0.808584) with  --  AT5G52530  --  interacts with  --  At-SR30; ATSRP30; ATSRP30.1; ATSRP30.2; SR30
46 AT3G06480  --  has similar expression pattern (mutual information value=0.83219) with  --  AT5G55670  --  has similar expression pattern (mutual information value=0.848719) with  --  AT2G38420
47 AT3G06480  --  has similar expression pattern (mutual information value=0.83219) with  --  AT5G55670  --  has similar expression pattern (mutual information value=0.954439) with  --  AT1G60900
48 AT3G06480  --  has similar expression pattern (mutual information value=0.83219) with  --  AT5G55670  --  has similar expression pattern (mutual information value=0.954439) with  --  AT1G60830
49 AT3G06480  --  has similar expression pattern (mutual information value=0.83219) with  --  AT5G55670  --  has similar expression pattern (mutual information value=0.92414) with  --  AT1G15200
50 AT3G06480  --  has similar expression pattern (mutual information value=0.83219) with  --  AT5G55670  --  has similar expression pattern (mutual information value=0.880696) with  --  ARF12
51 AT3G06480  --  has similar expression pattern (mutual information value=0.83219) with  --  AT5G55670  --  has similar expression pattern (mutual information value=0.882351) with  --  AT1G01930
52 AT3G06480  --  has similar expression pattern (mutual information value=0.83219) with  --  AT5G55670  --  has similar expression pattern (mutual information value=1.02811) with  --  CHR11
53 AT3G06480  --  has similar expression pattern (mutual information value=0.83219) with  --  AT5G55670  --  has similar expression pattern (mutual information value=0.879491) with  --  ATCHR12
54 AT3G06480  --  has similar expression pattern (mutual information value=0.83219) with  --  AT5G55670  --  has similar expression pattern (mutual information value=0.880416) with  --  AT3G17160
55 AT3G06480  --  has similar expression pattern (mutual information value=0.83219) with  --  AT5G55670  --  has similar expression pattern (mutual information value=0.853437) with  --  LWD2
56 AT3G06480  --  has similar expression pattern (mutual information value=0.83219) with  --  AT5G55670  --  has similar expression pattern (mutual information value=0.947796) with  --  EIF4B1
57 AT3G06480  --  has similar expression pattern (mutual information value=0.83219) with  --  AT5G55670  --  has similar expression pattern (mutual information value=1.00664) with  --  AT4G31880
58 AT3G06480  --  has similar expression pattern (mutual information value=0.83219) with  --  AT5G55670  --  has similar expression pattern (mutual information value=0.82418) with  --  AT3G44690
59 AT3G06480  --  has similar expression pattern (mutual information value=0.83219) with  --  AT5G55670  --  has similar expression pattern (mutual information value=1.00797) with  --  AT1G31870
60 AT3G06480  --  has similar expression pattern (mutual information value=0.83219) with  --  AT5G55670  --  has similar expression pattern (mutual information value=1.06662) with  --  SMU2
61 AT3G06480  --  has similar expression pattern (mutual information value=0.977464) with  --  AT5G17440  --  has similar expression pattern (mutual information value=0.861632) with  --  AT2G17410
62 AT3G06480  --  has similar expression pattern (mutual information value=0.977464) with  --  AT5G17440  --  has similar expression pattern (mutual information value=0.919414) with  --  AT3G61420
63 AT3G06480  --  has similar expression pattern (mutual information value=0.977464) with  --  AT5G17440  --  has similar expression pattern (mutual information value=0.919414) with  --  AT1G55750
64 AT3G06480  --  has similar expression pattern (mutual information value=0.977464) with  --  AT5G17440  --  has similar expression pattern (mutual information value=0.891596) with  --  AT1G60200
65 AT3G06480  --  has similar expression pattern (mutual information value=0.977464) with  --  AT5G17440  --  has similar expression pattern (mutual information value=0.902676) with  --  SMC3; TTN7
66 AT3G06480  --  has similar expression pattern (mutual information value=0.977464) with  --  AT5G17440  --  has similar expression pattern (mutual information value=0.862926) with  --  AT1G16270
67 AT3G06480  --  has similar expression pattern (mutual information value=0.977464) with  --  AT5G17440  --  has similar expression pattern (mutual information value=0.862926) with  --  AT1G79570
68 AT3G06480  --  has similar expression pattern (mutual information value=0.977464) with  --  AT5G17440  --  has similar expression pattern (mutual information value=0.840061) with  --  AT1G02890
69 AT3G06480  --  has similar expression pattern (mutual information value=0.977464) with  --  AT5G17440  --  has similar expression pattern (mutual information value=0.874149) with  --  AT4G21660
70 AT3G06480  --  has similar expression pattern (mutual information value=0.977464) with  --  AT5G17440  --  has similar expression pattern (mutual information value=0.874149) with  --  AT1G11520
71 AT3G06480  --  has similar expression pattern (mutual information value=0.977464) with  --  AT5G17440  --  has similar expression pattern (mutual information value=1.00414) with  --  AT1G18950
72 AT3G06480  --  has similar expression pattern (mutual information value=0.977464) with  --  AT5G17440  --  has similar expression pattern (mutual information value=0.837898) with  --  ATS6A.2; RPT5A
73 AT3G06480  --  has similar expression pattern (mutual information value=0.977464) with  --  AT5G17440  --  has similar expression pattern (mutual information value=0.874441) with  --  AT3G45190
74 AT3G06480  --  has similar expression pattern (mutual information value=0.977464) with  --  AT5G17440  --  has similar expression pattern (mutual information value=0.899991) with  --  AT5G28330
75 AT3G06480  --  has similar expression pattern (mutual information value=0.977464) with  --  AT5G17440  --  has similar expression pattern (mutual information value=0.899991) with  --  AT5G28390
76 AT3G06480  --  has similar expression pattern (mutual information value=0.977464) with  --  AT5G17440  --  has similar expression pattern (mutual information value=0.899991) with  --  AT3G52660
77 AT3G06480  --  has similar expression pattern (mutual information value=0.977464) with  --  AT5G17440  --  has similar expression pattern (mutual information value=0.928544) with  --  SUA
78 AT3G06480  --  has similar expression pattern (mutual information value=0.977464) with  --  AT5G17440  --  has similar expression pattern (mutual information value=0.890966) with  --  TON1; TON1A
79 AT3G06480  --  has similar expression pattern (mutual information value=0.977464) with  --  AT5G17440  --  has similar expression pattern (mutual information value=0.828187) with  --  ATSNX1; SNX1
80 AT3G06480  --  has similar expression pattern (mutual information value=0.977464) with  --  AT5G17440  --  has similar expression pattern (mutual information value=0.900188) with  --  AtLHP1; LHP1; TFL2
81 AT3G06480  --  has similar expression pattern (mutual information value=0.977464) with  --  AT5G17440  --  has similar expression pattern (mutual information value=0.830561) with  --  AT4G36960
82 AT3G06480  --  has similar expression pattern (mutual information value=0.889073) with  --  AT5G19950  --  has similar expression pattern (mutual information value=0.831871) with  --  AT2G21230
83 AT3G06480  --  has similar expression pattern (mutual information value=0.889073) with  --  AT5G19950  --  has similar expression pattern (mutual information value=0.901983) with  --  ASIL2
84 AT3G06480  --  has similar expression pattern (mutual information value=0.889073) with  --  AT5G19950  --  interacts with  --  ATPRMT11; ATPRMT1B; PRMT11; PRMT1B
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