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A Graph Search-Empowered Integrative Database of Arabidopsis Signaling Transduction, Metabolism and Gene Regulation Networks   
Location:  Home > Details for node AT3G56120
Type: Protein GRN ID: np28503 Name:
Annotation: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [EC:2.1.1.228]
Gene Locus: AT3G56120
Gene Expression (Affy ATH1 probeset): 251712_at    
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 Protein modification
 Protein-protein interaction
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 Compound-protein interaction
 TF-target gene regulation
 Small RNA-target regulation
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 Carrier and transported molecule
 Catalytic chemical reaction
 Co-expressed gene pair
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Relationship type:  protein modification     catalytic chemical reaction     protein-protein interaction    
compound-protein interaction     TF-target gene regulation     small RNA-target regulation    
co-expressed gene pair     carrier and transported molecule     family/complex and member
Relationship evidence:  Solid line: validated          Dashed line: predicted
Relationship direction: Arrow: positive          T shape: negative          None arrow: unknown or n/a
Hormone association: Thicker line: hormone related relationship         : hormone related Node
Node type:  Transcription factor or transcriptional regulator       Compound       Kinase
 Small regulatory RNA (miRNA & ta-siRNA)       Other nodes
No. Path
2 AT3G56120  --  has similar expression pattern (mutual information value=0.919497) with  --  AT2G40660
3 AT3G56120  --  has similar expression pattern (mutual information value=0.919497) with  --  AT2G40660  --  has similar expression pattern (mutual information value=0.907711) with  --  MSI02; MSI2; NFC02; NFC2
4 AT3G56120  --  has similar expression pattern (mutual information value=0.919497) with  --  AT2G40660  --  has similar expression pattern (mutual information value=0.883533) with  --  ATORC4; ORC4
5 AT3G56120  --  has similar expression pattern (mutual information value=0.919497) with  --  AT2G40660  --  has similar expression pattern (mutual information value=0.883109) with  --  AT1G44835
6 AT3G56120  --  has similar expression pattern (mutual information value=0.919497) with  --  AT2G40660  --  has similar expression pattern (mutual information value=0.821639) with  --  AT1G15810
7 AT3G56120  --  has similar expression pattern (mutual information value=0.919497) with  --  AT2G40660  --  has similar expression pattern (mutual information value=1.01409) with  --  HSP60-3A
8 AT3G56120  --  has similar expression pattern (mutual information value=0.919497) with  --  AT2G40660  --  has similar expression pattern (mutual information value=0.978014) with  --  AT4G10480
9 AT3G56120  --  has similar expression pattern (mutual information value=0.919497) with  --  AT2G40660  --  has similar expression pattern (mutual information value=0.824875) with  --  AT4G11120
10 AT3G56120  --  has similar expression pattern (mutual information value=0.919497) with  --  AT2G40660  --  has similar expression pattern (mutual information value=0.922566) with  --  AT4G34555
11 AT3G56120  --  has similar expression pattern (mutual information value=0.919497) with  --  AT2G40660  --  has similar expression pattern (mutual information value=0.810853) with  --  ATUBA2; UBA 2
12 AT3G56120  --  has similar expression pattern (mutual information value=0.919497) with  --  AT2G40660  --  has similar expression pattern (mutual information value=0.812999) with  --  AT5G07090
13 AT3G56120  --  has similar expression pattern (mutual information value=0.919497) with  --  AT2G40660  --  has similar expression pattern (mutual information value=0.960302) with  --  ATHD2; ATHD2B; HD2; HD2B; HDA4; HDT02; HDT2
14 AT3G56120  --  has similar expression pattern (mutual information value=0.919497) with  --  AT2G40660  --  has similar expression pattern (mutual information value=0.89486) with  --  AT5G26710
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