Screen Resolution:     
Welcome to HRGRN
A Graph Search-Empowered Integrative Database of Arabidopsis Signaling Transduction, Metabolism and Gene Regulation Networks   
Location:  Home > Details for node AT3G48810
Type: Protein GRN ID: np24482 Name:
Annotation: Pentatricopeptide repeat (PPR) superfamily protein
Gene Locus: AT3G48810
Gene Expression (Affy ATH1 probeset): 252332_at    
Graph Customization
   
Choose color for highlight:  
Display edge: validated and predicted
Display node/edge prompt:
Layout:
 as format     
Data Filter
 Protein modification
 Protein-protein interaction
        also include predicted relationship
 Compound-protein interaction
 TF-target gene regulation
 Small RNA-target regulation
        also include predicted relationship
 Carrier and transported molecule
 Catalytic chemical reaction
 Co-expressed gene pair
        with mutual information value >

  Ignore nodes having > relationships
 
Relationship type:  protein modification     catalytic chemical reaction     protein-protein interaction    
compound-protein interaction     TF-target gene regulation     small RNA-target regulation    
co-expressed gene pair     carrier and transported molecule     family/complex and member
Relationship evidence:  Solid line: validated          Dashed line: predicted
Relationship direction: Arrow: positive          T shape: negative          None arrow: unknown or n/a
Hormone association: Thicker line: hormone related relationship         : hormone related Node
Node type:  Transcription factor or transcriptional regulator       Compound       Kinase
 Small regulatory RNA (miRNA & ta-siRNA)       Other nodes
No. Path
2 AT3G48810  --  has similar expression pattern (mutual information value=0.839926) with  --  AT1G02710
3 AT3G48810  --  has similar expression pattern (mutual information value=0.824205) with  --  AT1G15840
4 AT3G48810  --  has similar expression pattern (mutual information value=0.832499) with  --  AT1G15830
5 AT3G48810  --  has similar expression pattern (mutual information value=0.845141) with  --  AT3G50540
6 AT3G48810  --  has similar expression pattern (mutual information value=0.839926) with  --  AT1G02710  --  has similar expression pattern (mutual information value=1.17888) with  --  AT2G01034
7 AT3G48810  --  has similar expression pattern (mutual information value=0.839926) with  --  AT1G02710  --  has similar expression pattern (mutual information value=1.17888) with  --  AT5G30102
8 AT3G48810  --  has similar expression pattern (mutual information value=0.839926) with  --  AT1G02710  --  has similar expression pattern (mutual information value=1.17888) with  --  AT2G07660
9 AT3G48810  --  has similar expression pattern (mutual information value=0.839926) with  --  AT1G02710  --  has similar expression pattern (mutual information value=1.17888) with  --  AT3G42996
10 AT3G48810  --  has similar expression pattern (mutual information value=0.839926) with  --  AT1G02710  --  has similar expression pattern (mutual information value=1.17888) with  --  AT4G03840
11 AT3G48810  --  has similar expression pattern (mutual information value=0.839926) with  --  AT1G02710  --  has similar expression pattern (mutual information value=1.17888) with  --  AT3G30413
12 AT3G48810  --  has similar expression pattern (mutual information value=0.839926) with  --  AT1G02710  --  has similar expression pattern (mutual information value=1.17888) with  --  AT2G01026
13 AT3G48810  --  has similar expression pattern (mutual information value=0.839926) with  --  AT1G02710  --  has similar expression pattern (mutual information value=1.17888) with  --  AT3G29615
14 AT3G48810  --  has similar expression pattern (mutual information value=0.839926) with  --  AT1G02710  --  has similar expression pattern (mutual information value=1.17888) with  --  AT2G12930
15 AT3G48810  --  has similar expression pattern (mutual information value=0.839926) with  --  AT1G02710  --  has similar expression pattern (mutual information value=1.17888) with  --  AT5G29075
16 AT3G48810  --  has similar expression pattern (mutual information value=0.839926) with  --  AT1G02710  --  has similar expression pattern (mutual information value=1.17888) with  --  AT2G10780
17 AT3G48810  --  has similar expression pattern (mutual information value=0.839926) with  --  AT1G02710  --  has similar expression pattern (mutual information value=1.17888) with  --  AT4G16910
18 AT3G48810  --  has similar expression pattern (mutual information value=0.839926) with  --  AT1G02710  --  has similar expression pattern (mutual information value=1.17888) with  --  AT2G06470
19 AT3G48810  --  has similar expression pattern (mutual information value=0.839926) with  --  AT1G02710  --  has similar expression pattern (mutual information value=1.17888) with  --  AT2G01024
20 AT3G48810  --  has similar expression pattern (mutual information value=0.839926) with  --  AT1G02710  --  has similar expression pattern (mutual information value=0.956687) with  --  AT2G10920
21 AT3G48810  --  has similar expression pattern (mutual information value=0.839926) with  --  AT1G02710  --  has similar expression pattern (mutual information value=1.07067) with  --  AT1G41750
22 AT3G48810  --  has similar expression pattern (mutual information value=0.839926) with  --  AT1G02710  --  has similar expression pattern (mutual information value=1.12677) with  --  AT3G32917
23 AT3G48810  --  has similar expression pattern (mutual information value=0.839926) with  --  AT1G02710  --  has similar expression pattern (mutual information value=0.950763) with  --  AT4G03750
24 AT3G48810  --  has similar expression pattern (mutual information value=0.839926) with  --  AT1G02710  --  has similar expression pattern (mutual information value=0.891269) with  --  AT4G05300
25 AT3G48810  --  has similar expression pattern (mutual information value=0.839926) with  --  AT1G02710  --  has similar expression pattern (mutual information value=1.20889) with  --  AT2G12685
26 AT3G48810  --  has similar expression pattern (mutual information value=0.839926) with  --  AT1G02710  --  has similar expression pattern (mutual information value=1.20889) with  --  AT2G07395
27 AT3G48810  --  has similar expression pattern (mutual information value=0.839926) with  --  AT1G02710  --  has similar expression pattern (mutual information value=1.20889) with  --  AT3G30465
28 AT3G48810  --  has similar expression pattern (mutual information value=0.839926) with  --  AT1G02710  --  has similar expression pattern (mutual information value=1.20889) with  --  AT4G07680
29 AT3G48810  --  has similar expression pattern (mutual information value=0.839926) with  --  AT1G02710  --  has similar expression pattern (mutual information value=0.966048) with  --  AT3G43060
30 AT3G48810  --  has similar expression pattern (mutual information value=0.839926) with  --  AT1G02710  --  has similar expression pattern (mutual information value=1.19071) with  --  AT3G46380
31 AT3G48810  --  has similar expression pattern (mutual information value=0.839926) with  --  AT1G02710  --  has similar expression pattern (mutual information value=1.26374) with  --  ATGRP-7; ATGRP17; GRP17
32 AT3G48810  --  has similar expression pattern (mutual information value=0.839926) with  --  AT1G02710  --  has similar expression pattern (mutual information value=0.848412) with  --  AT5G40130
33 AT3G48810  --  has similar expression pattern (mutual information value=0.824205) with  --  AT1G15840  --  has similar expression pattern (mutual information value=0.821032) with  --  AT2G05820
34 AT3G48810  --  has similar expression pattern (mutual information value=0.824205) with  --  AT1G15840  --  has similar expression pattern (mutual information value=1.30833) with  --  AT2G05580
35 AT3G48810  --  has similar expression pattern (mutual information value=0.824205) with  --  AT1G15840  --  has similar expression pattern (mutual information value=1.18039) with  --  AT2G10020
36 AT3G48810  --  has similar expression pattern (mutual information value=0.824205) with  --  AT1G15840  --  has similar expression pattern (mutual information value=1.07788) with  --  AT2G16340
37 AT3G48810  --  has similar expression pattern (mutual information value=0.824205) with  --  AT1G15840  --  has similar expression pattern (mutual information value=0.840621) with  --  CYP89A6
38 AT3G48810  --  has similar expression pattern (mutual information value=0.824205) with  --  AT1G15840  --  has similar expression pattern (mutual information value=1.13157) with  --  AT1G11690
39 AT3G48810  --  has similar expression pattern (mutual information value=0.824205) with  --  AT1G15840  --  has similar expression pattern (mutual information value=1.26696) with  --  AT1G36440
40 AT3G48810  --  has similar expression pattern (mutual information value=0.824205) with  --  AT1G15840  --  has similar expression pattern (mutual information value=0.879669) with  --  AT1G02490
41 AT3G48810  --  has similar expression pattern (mutual information value=0.824205) with  --  AT1G15840  --  has similar expression pattern (mutual information value=1.20247) with  --  AT1G41770
42 AT3G48810  --  has similar expression pattern (mutual information value=0.824205) with  --  AT1G15840  --  has similar expression pattern (mutual information value=1.41552) with  --  AT2G12210
43 AT3G48810  --  has similar expression pattern (mutual information value=0.824205) with  --  AT1G15840  --  has similar expression pattern (mutual information value=1.41552) with  --  AT2G11060
44 AT3G48810  --  has similar expression pattern (mutual information value=0.824205) with  --  AT1G15840  --  has similar expression pattern (mutual information value=1.41552) with  --  AT1G35280
45 AT3G48810  --  has similar expression pattern (mutual information value=0.824205) with  --  AT1G15840  --  has similar expression pattern (mutual information value=0.818272) with  --  AT4G07530
46 AT3G48810  --  has similar expression pattern (mutual information value=0.824205) with  --  AT1G15840  --  has similar expression pattern (mutual information value=0.80318) with  --  AT4G33610
47 AT3G48810  --  has similar expression pattern (mutual information value=0.824205) with  --  AT1G15840  --  has similar expression pattern (mutual information value=1.34278) with  --  AT3G42130
48 AT3G48810  --  has similar expression pattern (mutual information value=0.824205) with  --  AT1G15840  --  has similar expression pattern (mutual information value=0.960165) with  --  AT3G44440
49 AT3G48810  --  has similar expression pattern (mutual information value=0.824205) with  --  AT1G15840  --  has similar expression pattern (mutual information value=1.0536) with  --  AT5G40490
50 AT3G48810  --  has similar expression pattern (mutual information value=0.832499) with  --  AT1G15830  --  has similar expression pattern (mutual information value=0.832317) with  --  AT3G12190
51 AT3G48810  --  has similar expression pattern (mutual information value=0.832499) with  --  AT1G15830  --  has similar expression pattern (mutual information value=0.887786) with  --  AT4G24030
52 AT3G48810  --  has similar expression pattern (mutual information value=0.832499) with  --  AT1G15830  --  has similar expression pattern (mutual information value=0.80301) with  --  UGT78D3
53 AT3G48810  --  has similar expression pattern (mutual information value=0.832499) with  --  AT1G15830  --  has similar expression pattern (mutual information value=0.806922) with  --  AT4G15150
54 AT3G48810  --  has similar expression pattern (mutual information value=0.845141) with  --  AT3G50540  --  has similar expression pattern (mutual information value=0.801951) with  --  AT2G42560
55 AT3G48810  --  has similar expression pattern (mutual information value=0.845141) with  --  AT3G50540  --  has similar expression pattern (mutual information value=1.02712) with  --  AT3G33073
56 AT3G48810  --  has similar expression pattern (mutual information value=0.845141) with  --  AT3G50540  --  has similar expression pattern (mutual information value=0.852223) with  --  AT5G25750
   Funding by the National Science Foundation    Funding by the Oklahoma Center for the Advancement of Science & Technology    Additional funding by the Samuel Roberts Noble Foundation

Copyright © The Zhao Lab

Disclaimer | Contact