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Location:  Home > Details for node RGF3
Type: Protein GRN ID: np22352 Name: RGF3
Annotation: RGF3 | Encodes a root meristem growth factor (RGF). Belongs to a family of functionally redundant homologous peptides that are secreted, tyrosine-sulfated, and expressed mainly in the stem cell area and the innermost layer of central columella cells. RGFs are required for maintenance of the root stem cell niche and transit amplifying cell proliferation. Members of this family include: At5g60810 (RGF1), At1g13620 (RGF2), At2g04025 (RGF3), At3g30350 (RGF4), At5g51451 (RGF5), At4g16515 (RGF6), At3g02240 (RGF7), At2g03830 (RGF8) and At5g64770 (RGF9).
Gene Locus: AT2G04025
Gene Expression (Affy ATH1 probeset): 263481_at    
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Relationship type:  protein modification     catalytic chemical reaction     protein-protein interaction    
compound-protein interaction     TF-target gene regulation     small RNA-target regulation    
co-expressed gene pair     carrier and transported molecule     family/complex and member
Relationship evidence:  Solid line: validated          Dashed line: predicted
Relationship direction: Arrow: positive          T shape: negative          None arrow: unknown or n/a
Hormone association: Thicker line: hormone related relationship         : hormone related Node
Node type:  Transcription factor or transcriptional regulator       Compound       Kinase
 Small regulatory RNA (miRNA & ta-siRNA)       Other nodes
No. Path
2 RGF3  --  has similar expression pattern (mutual information value=1.00532) with  --  AT1G52070
3 RGF3  --  has similar expression pattern (mutual information value=1.10994) with  --  ADF11
4 RGF3  --  has similar expression pattern (mutual information value=0.914024) with  --  AT3G15240
5 RGF3  --  has similar expression pattern (mutual information value=0.902264) with  --  AT4G31320
6 RGF3  --  has similar expression pattern (mutual information value=0.891158) with  --  AT5G10130
7 RGF3  --  has similar expression pattern (mutual information value=1.00532) with  --  AT1G52070  --  has similar expression pattern (mutual information value=0.859568) with  --  AT2G39110
8 RGF3  --  has similar expression pattern (mutual information value=1.00532) with  --  AT1G52070  --  has similar expression pattern (mutual information value=1.47652) with  --  AT1G52060
9 RGF3  --  has similar expression pattern (mutual information value=1.00532) with  --  AT1G52070  --  has similar expression pattern (mutual information value=1.01765) with  --  AT1G80240
10 RGF3  --  has similar expression pattern (mutual information value=1.00532) with  --  AT1G52070  --  has similar expression pattern (mutual information value=1.18916) with  --  AT1G50060
11 RGF3  --  has similar expression pattern (mutual information value=1.00532) with  --  AT1G52070  --  has similar expression pattern (mutual information value=0.85177) with  --  AGL12; XAL1
12 RGF3  --  has similar expression pattern (mutual information value=1.00532) with  --  AT1G52070  --  has similar expression pattern (mutual information value=0.814168) with  --  ATBS1
13 RGF3  --  has similar expression pattern (mutual information value=1.00532) with  --  AT1G52070  --  has similar expression pattern (mutual information value=1.26214) with  --  BGLU21
14 RGF3  --  has similar expression pattern (mutual information value=1.00532) with  --  AT1G52070  --  has similar expression pattern (mutual information value=1.26214) with  --  BGLU22
15 RGF3  --  has similar expression pattern (mutual information value=1.00532) with  --  AT1G52070  --  has similar expression pattern (mutual information value=0.913304) with  --  ATGSTU28; GSTU28
16 RGF3  --  has similar expression pattern (mutual information value=1.00532) with  --  AT1G52070  --  has similar expression pattern (mutual information value=1.30512) with  --  ATMLP-300B; MEE36; MLP-300B
17 RGF3  --  has similar expression pattern (mutual information value=1.00532) with  --  AT1G52070  --  has similar expression pattern (mutual information value=0.916809) with  --  IDI2; IPIAT1; IPP2
18 RGF3  --  has similar expression pattern (mutual information value=1.00532) with  --  AT1G52070  --  has similar expression pattern (mutual information value=0.805456) with  --  RALFL27
19 RGF3  --  has similar expression pattern (mutual information value=1.00532) with  --  AT1G52070  --  has similar expression pattern (mutual information value=1.15587) with  --  UNE11
20 RGF3  --  has similar expression pattern (mutual information value=1.00532) with  --  AT1G52070  --  has similar expression pattern (mutual information value=0.834324) with  --  ATMSRB8; MSRB8
21 RGF3  --  has similar expression pattern (mutual information value=1.00532) with  --  AT1G52070  --  has similar expression pattern (mutual information value=0.834324) with  --  ATMSRB7; MSRB7
22 RGF3  --  has similar expression pattern (mutual information value=1.00532) with  --  AT1G52070  --  has similar expression pattern (mutual information value=1.13517) with  --  AT5G40510
23 RGF3  --  has similar expression pattern (mutual information value=1.00532) with  --  AT1G52070  --  has similar expression pattern (mutual information value=1.13626) with  --  AT5G54370
24 RGF3  --  has similar expression pattern (mutual information value=1.00532) with  --  AT1G52070  --  has similar expression pattern (mutual information value=1.06637) with  --  AT5G62340
25 RGF3  --  has similar expression pattern (mutual information value=1.00532) with  --  AT1G52070  --  has similar expression pattern (mutual information value=1.10416) with  --  GMD1
26 RGF3  --  has similar expression pattern (mutual information value=1.00532) with  --  AT1G52070  --  has similar expression pattern (mutual information value=0.870253) with  --  BCCP2; CAC1-B
27 RGF3  --  has similar expression pattern (mutual information value=1.00532) with  --  AT1G52070  --  has similar expression pattern (mutual information value=1.00533) with  --  sks15
28 RGF3  --  has similar expression pattern (mutual information value=1.00532) with  --  AT1G52070  --  interacts with  --  ARR5
29 RGF3  --  has similar expression pattern (mutual information value=1.00532) with  --  AT1G52070  --  is the target gene of  --  ath-miR846
30 RGF3  --  has similar expression pattern (mutual information value=1.00532) with  --  AT1G52070  --  is the target gene of  --  ath-miR842
31 RGF3  --  has similar expression pattern (mutual information value=1.10994) with  --  ADF11  --  has similar expression pattern (mutual information value=0.953158) with  --  AT2G41970
32 RGF3  --  has similar expression pattern (mutual information value=1.10994) with  --  ADF11  --  has similar expression pattern (mutual information value=1.19055) with  --  AT2G34910
33 RGF3  --  has similar expression pattern (mutual information value=1.10994) with  --  ADF11  --  has similar expression pattern (mutual information value=0.874702) with  --  ATMLO15; MLO15
34 RGF3  --  has similar expression pattern (mutual information value=1.10994) with  --  ADF11  --  has similar expression pattern (mutual information value=0.803425) with  --  scpl28
35 RGF3  --  has similar expression pattern (mutual information value=1.10994) with  --  ADF11  --  has similar expression pattern (mutual information value=0.870983) with  --  MRH6
36 RGF3  --  has similar expression pattern (mutual information value=1.10994) with  --  ADF11  --  has similar expression pattern (mutual information value=0.822699) with  --  ATPAP7; PAP7
37 RGF3  --  has similar expression pattern (mutual information value=1.10994) with  --  ADF11  --  has similar expression pattern (mutual information value=0.956959) with  --  AT1G33800
38 RGF3  --  has similar expression pattern (mutual information value=1.10994) with  --  ADF11  --  has similar expression pattern (mutual information value=0.940007) with  --  AtGH9C1; GH9C1
39 RGF3  --  has similar expression pattern (mutual information value=1.10994) with  --  ADF11  --  has similar expression pattern (mutual information value=0.902814) with  --  ATPPC3; PPC3
40 RGF3  --  has similar expression pattern (mutual information value=1.10994) with  --  ADF11  --  has similar expression pattern (mutual information value=0.804855) with  --  CYP705A20
41 RGF3  --  has similar expression pattern (mutual information value=1.10994) with  --  ADF11  --  has similar expression pattern (mutual information value=1.01067) with  --  AT3G28550
42 RGF3  --  has similar expression pattern (mutual information value=1.10994) with  --  ADF11  --  has similar expression pattern (mutual information value=0.972854) with  --  CYP87A2
43 RGF3  --  has similar expression pattern (mutual information value=1.10994) with  --  ADF11  --  has similar expression pattern (mutual information value=1.02931) with  --  PLA IVD; PLP8
44 RGF3  --  has similar expression pattern (mutual information value=1.10994) with  --  ADF11  --  has similar expression pattern (mutual information value=0.92334) with  --  AT3G49960
45 RGF3  --  has similar expression pattern (mutual information value=1.10994) with  --  ADF11  --  has similar expression pattern (mutual information value=0.93416) with  --  AT5G14150
46 RGF3  --  has similar expression pattern (mutual information value=1.10994) with  --  ADF11  --  has similar expression pattern (mutual information value=0.890568) with  --  AT5G26280
47 RGF3  --  has similar expression pattern (mutual information value=0.914024) with  --  AT3G15240  --  has similar expression pattern (mutual information value=1.1423) with  --  AT2G25980
48 RGF3  --  has similar expression pattern (mutual information value=0.914024) with  --  AT3G15240  --  has similar expression pattern (mutual information value=1.03228) with  --  AT1G52050
49 RGF3  --  has similar expression pattern (mutual information value=0.914024) with  --  AT3G15240  --  has similar expression pattern (mutual information value=1.0868) with  --  ATCNGC14; CNGC14
50 RGF3  --  has similar expression pattern (mutual information value=0.914024) with  --  AT3G15240  --  has similar expression pattern (mutual information value=1.09467) with  --  AT1G33750
51 RGF3  --  has similar expression pattern (mutual information value=0.914024) with  --  AT3G15240  --  has similar expression pattern (mutual information value=1.02478) with  --  MEL4; NPY4
52 RGF3  --  has similar expression pattern (mutual information value=0.914024) with  --  AT3G15240  --  has similar expression pattern (mutual information value=0.817851) with  --  AT3G27150
53 RGF3  --  has similar expression pattern (mutual information value=0.914024) with  --  AT3G15240  --  has similar expression pattern (mutual information value=1.00294) with  --  LBD13
54 RGF3  --  has similar expression pattern (mutual information value=0.914024) with  --  AT3G15240  --  has similar expression pattern (mutual information value=1.13349) with  --  AT1G31950
55 RGF3  --  has similar expression pattern (mutual information value=0.914024) with  --  AT3G15240  --  has similar expression pattern (mutual information value=0.823202) with  --  AT4G01240
56 RGF3  --  has similar expression pattern (mutual information value=0.914024) with  --  AT3G15240  --  has similar expression pattern (mutual information value=0.986127) with  --  AT5G35940
57 RGF3  --  has similar expression pattern (mutual information value=0.914024) with  --  AT3G15240  --  has similar expression pattern (mutual information value=0.984984) with  --  ATS; KAN4
58 RGF3  --  has similar expression pattern (mutual information value=0.914024) with  --  AT3G15240  --  has similar expression pattern (mutual information value=1.05212) with  --  AT5G48940
59 RGF3  --  has similar expression pattern (mutual information value=0.914024) with  --  AT3G15240  --  has similar expression pattern (mutual information value=1.12059) with  --  AHK5; CKI2; HK5
60 RGF3  --  has similar expression pattern (mutual information value=0.902264) with  --  AT4G31320  --  has similar expression pattern (mutual information value=1.04342) with  --  AGP30; ATAGP30
61 RGF3  --  has similar expression pattern (mutual information value=0.902264) with  --  AT4G31320  --  has similar expression pattern (mutual information value=0.819668) with  --  AT1G05650
62 RGF3  --  has similar expression pattern (mutual information value=0.902264) with  --  AT4G31320  --  has similar expression pattern (mutual information value=0.819668) with  --  AT1G05660
63 RGF3  --  has similar expression pattern (mutual information value=0.902264) with  --  AT4G31320  --  has similar expression pattern (mutual information value=0.902906) with  --  AT4G28650
64 RGF3  --  has similar expression pattern (mutual information value=0.902264) with  --  AT4G31320  --  has similar expression pattern (mutual information value=0.811441) with  --  AT4G29690
65 RGF3  --  has similar expression pattern (mutual information value=0.902264) with  --  AT4G31320  --  has similar expression pattern (mutual information value=0.81475) with  --  ATMYB66; MYB66; WER; WER1
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