Screen Resolution:     
Welcome to HRGRN
A Graph Search-Empowered Integrative Database of Arabidopsis Signaling Transduction, Metabolism and Gene Regulation Networks   
Location:  Home > Details for node MCM5
Type: Protein GRN ID: np21456 Name: MCM5
Annotation: MCM5 | Minichromosome maintenance (MCM2/3/5) family protein [EC:3.6.4.12]
Gene Locus: AT2G07690
Gene Expression (Affy ATH1 probeset): 266959_at    
Graph Customization
   
Choose color for highlight:  
Display edge: validated and predicted
Display node/edge prompt:
Layout:
 as format     
Data Filter
 Protein modification
 Protein-protein interaction
        also include predicted relationship
 Compound-protein interaction
 TF-target gene regulation
 Small RNA-target regulation
        also include predicted relationship
 Carrier and transported molecule
 Catalytic chemical reaction
 Co-expressed gene pair
        with mutual information value >

  Ignore nodes having > relationships
 
Relationship type:  protein modification     catalytic chemical reaction     protein-protein interaction    
compound-protein interaction     TF-target gene regulation     small RNA-target regulation    
co-expressed gene pair     carrier and transported molecule     family/complex and member
Relationship evidence:  Solid line: validated          Dashed line: predicted
Relationship direction: Arrow: positive          T shape: negative          None arrow: unknown or n/a
Hormone association: Thicker line: hormone related relationship         : hormone related Node
Node type:  Transcription factor or transcriptional regulator       Compound       Kinase
 Small regulatory RNA (miRNA & ta-siRNA)       Other nodes
No. Path
2 MCM5  --  has similar expression pattern (mutual information value=0.882912) with  --  ATORC1A; ORC1A
3 MCM5  --  has similar expression pattern (mutual information value=0.914313) with  --  ORTH2; VIM1
4 MCM5  --  has similar expression pattern (mutual information value=0.882912) with  --  ATORC1A; ORC1A  --  interacts with  --  ABAP1
5 MCM5  --  has similar expression pattern (mutual information value=0.882912) with  --  ATORC1A; ORC1A  --  has similar expression pattern (mutual information value=0.852373) with  --  ATPCNA2; PCNA2
6 MCM5  --  has similar expression pattern (mutual information value=0.882912) with  --  ATORC1A; ORC1A  --  has similar expression pattern (mutual information value=0.900098) with  --  AT5G13520
7 MCM5  --  has similar expression pattern (mutual information value=0.914313) with  --  ORTH2; VIM1  --  has similar expression pattern (mutual information value=0.834375) with  --  AT2G22610
8 MCM5  --  has similar expression pattern (mutual information value=0.914313) with  --  ORTH2; VIM1  --  has similar expression pattern (mutual information value=0.814859) with  --  UBC20
9 MCM5  --  has similar expression pattern (mutual information value=0.914313) with  --  ORTH2; VIM1  --  has similar expression pattern (mutual information value=0.898305) with  --  ATTOPII; TOPII
10 MCM5  --  has similar expression pattern (mutual information value=0.914313) with  --  ORTH2; VIM1  --  has similar expression pattern (mutual information value=0.872948) with  --  AT3G51720
11 MCM5  --  has similar expression pattern (mutual information value=0.914313) with  --  ORTH2; VIM1  --  has similar expression pattern (mutual information value=0.823027) with  --  AT5G15510
12 MCM5  --  has similar expression pattern (mutual information value=0.914313) with  --  ORTH2; VIM1  --  is the target gene of  --  ath-miR3440b-5p
   Funding by the National Science Foundation    Funding by the Oklahoma Center for the Advancement of Science & Technology    Additional funding by the Samuel Roberts Noble Foundation

Copyright © The Zhao Lab

Disclaimer | Contact