Screen Resolution:     
Welcome to HRGRN
A Graph Search-Empowered Integrative Database of Arabidopsis Signaling Transduction, Metabolism and Gene Regulation Networks   
Location:  Home > Details for node ATCPSF30; CPSF30
Type: Protein GRN ID: np14283 Name: ATCPSF30; CPSF30
Annotation: CPSF30, ATCPSF30 | cleavage and polyadenylation specificity factor 30
Gene Locus: AT1G30460
Transcription factor /
transcriptional regulator:		 transcription factor family C3H
Gene Expression (Affy ATH1 probeset): 261798_at    
Graph Customization
   
Choose color for highlight:  
Display edge: validated and predicted
Display node/edge prompt:
Layout:
 as format     
Data Filter
 Protein modification
 Protein-protein interaction
        also include predicted relationship
 Compound-protein interaction
 TF-target gene regulation
 Small RNA-target regulation
        also include predicted relationship
 Carrier and transported molecule
 Catalytic chemical reaction
 Co-expressed gene pair
        with mutual information value >

  Ignore nodes having > relationships
 
Relationship type:  protein modification     catalytic chemical reaction     protein-protein interaction    
compound-protein interaction     TF-target gene regulation     small RNA-target regulation    
co-expressed gene pair     carrier and transported molecule     family/complex and member
Relationship evidence:  Solid line: validated          Dashed line: predicted
Relationship direction: Arrow: positive          T shape: negative          None arrow: unknown or n/a
Hormone association: Thicker line: hormone related relationship         : hormone related Node
Node type:  Transcription factor or transcriptional regulator       Compound       Kinase
 Small regulatory RNA (miRNA & ta-siRNA)       Other nodes
No. Path
2 ATCPSF30; CPSF30  --  interacts with  --  PCFS4
3 ATCPSF30; CPSF30  --  interacts with  --  AT1G66500
4 ATCPSF30; CPSF30  --  interacts with  --  AT4G25550
5 ATCPSF30; CPSF30  --  interacts with  --  ATFIP1[V]; ATFIPS5; FIP1[V]; FIPS5
6 ATCPSF30; CPSF30  --  interacts with  --  AT3G66652
7 ATCPSF30; CPSF30  --  interacts with  --  AT5G60940
8 ATCPSF30; CPSF30  --  interacts with  --  CLPS3
9 ATCPSF30; CPSF30  --  interacts with  --  ATCPSF160; CPSF160
10 ATCPSF30; CPSF30  --  interacts with  --  ATCPSF100; CPSF100; EMB1265; ESP5
11 ATCPSF30; CPSF30  --  interacts with  --  PAPS3
12 ATCPSF30; CPSF30  --  interacts with  --  PAPS2
13 ATCPSF30; CPSF30  --  interacts with  --  ATCSTF77; CSTF77
14 ATCPSF30; CPSF30  --  interacts with  --  FIP1
15 ATCPSF30; CPSF30  --  is the target gene of  --  ath-miR869.2
16 ATCPSF30; CPSF30  --  interacts with  --  PCFS4  --  interacts with  --  NRPB8B; NRPD8B; NRPE8B
17 ATCPSF30; CPSF30  --  interacts with  --  PCFS4  --  interacts with  --  AT5G43620
18 ATCPSF30; CPSF30  --  interacts with  --  PCFS4  --  is the target gene of  --  ath-miR824
19 ATCPSF30; CPSF30  --  interacts with  --  ATFIP1[V]; ATFIPS5; FIP1[V]; FIPS5  --  interacts with  --  AT5G65260
20 ATCPSF30; CPSF30  --  interacts with  --  ATFIP1[V]; ATFIPS5; FIP1[V]; FIPS5  --  interacts with  --  ATPABN1; PABN1
21 ATCPSF30; CPSF30  --  interacts with  --  ATFIP1[V]; ATFIPS5; FIP1[V]; FIPS5  --  interacts with  --  CSTF64
22 ATCPSF30; CPSF30  --  interacts with  --  ATFIP1[V]; ATFIPS5; FIP1[V]; FIPS5  --  interacts with  --  nPAP; PAP(IV)
23 ATCPSF30; CPSF30  --  interacts with  --  AT3G66652  --  has similar expression pattern (mutual information value=0.871227) with  --  AT2G24990
24 ATCPSF30; CPSF30  --  interacts with  --  AT3G66652  --  has similar expression pattern (mutual information value=0.871227) with  --  AT5G37350
25 ATCPSF30; CPSF30  --  interacts with  --  AT3G66652  --  has similar expression pattern (mutual information value=0.84516) with  --  emb1796
26 ATCPSF30; CPSF30  --  interacts with  --  AT3G66652  --  has similar expression pattern (mutual information value=0.895299) with  --  AT3G58840
27 ATCPSF30; CPSF30  --  interacts with  --  AT3G66652  --  has similar expression pattern (mutual information value=0.983348) with  --  AT5G57120
28 ATCPSF30; CPSF30  --  interacts with  --  AT3G66652  --  has similar expression pattern (mutual information value=0.824576) with  --  NRPC1
29 ATCPSF30; CPSF30  --  interacts with  --  AT3G66652  --  interacts with  --  CLPS5
30 ATCPSF30; CPSF30  --  interacts with  --  CLPS3  --  has product (in catalytic reaction)  --  5'-Phospho-DNA
31 ATCPSF30; CPSF30  --  interacts with  --  ATCPSF100; CPSF100; EMB1265; ESP5  --  interacts with  --  FY
32 ATCPSF30; CPSF30  --  interacts with  --  ATCPSF100; CPSF100; EMB1265; ESP5  --  interacts with  --  ATCPSF73-II; CPSF73-II; EDA26
33 ATCPSF30; CPSF30  --  interacts with  --  ATCPSF100; CPSF100; EMB1265; ESP5  --  interacts with  --  AT4G10500
34 ATCPSF30; CPSF30  --  interacts with  --  ATCPSF100; CPSF100; EMB1265; ESP5  --  has similar expression pattern (mutual information value=0.843781) with  --  AT2G18330
35 ATCPSF30; CPSF30  --  interacts with  --  PAPS3  --  has product (in catalytic reaction)  --  RNA
36 ATCPSF30; CPSF30  --  interacts with  --  ATCSTF77; CSTF77  --  is the target gene of  --  ath-miR858b
37 ATCPSF30; CPSF30  --  interacts with  --  ATCSTF77; CSTF77  --  is the target gene of  --  ath-miR858a
38 ATCPSF30; CPSF30  --  interacts with  --  FIP1  --  interacts with  --  AFH1; AHF1; ATFH1; FH1
39 ATCPSF30; CPSF30  --  interacts with  --  FIP1  --  interacts with  --  FIN219; JAR1
40 ATCPSF30; CPSF30  --  interacts with  --  FIP1  --  is regulated by  --  SPA1
41 ATCPSF30; CPSF30  --  interacts with  --  FIP1  --  is modified by  --  CDPK6
42 ATCPSF30; CPSF30  --  is the target gene of  --  ath-miR869.2  --  inhibit the expression of  --  AT5G52280
43 ATCPSF30; CPSF30  --  is the target gene of  --  ath-miR869.2  --  inhibit the expression of  --  AT5G42490
44 ATCPSF30; CPSF30  --  is the target gene of  --  ath-miR869.2  --  inhibit the expression of  --  EDE1; EMB3116; QWRF5
45 ATCPSF30; CPSF30  --  is the target gene of  --  ath-miR869.2  --  inhibit the expression of  --  AT1G67120
   Funding by the National Science Foundation    Funding by the Oklahoma Center for the Advancement of Science & Technology    Additional funding by the Samuel Roberts Noble Foundation

Copyright © The Zhao Lab

Disclaimer | Contact