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Location:  Home > Details for node pal3
Type: Protein GRN ID: np08005 Name: pal3
Annotation: PAL3, ATPAL3 | phenyl alanine ammonia-lyase 3 [EC:4.3.1.24]
Gene Locus: AT5G04230
Pathways: Salicylic acid 
Gene Expression (Affy ATH1 probeset): 245690_at    
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 Protein modification
 Protein-protein interaction
        also include predicted relationship
 Compound-protein interaction
 TF-target gene regulation
 Small RNA-target regulation
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 Carrier and transported molecule
 Catalytic chemical reaction
 Co-expressed gene pair
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Relationship type:  protein modification     catalytic chemical reaction     protein-protein interaction    
compound-protein interaction     TF-target gene regulation     small RNA-target regulation    
co-expressed gene pair     carrier and transported molecule     family/complex and member
Relationship evidence:  Solid line: validated          Dashed line: predicted
Relationship direction: Arrow: positive          T shape: negative          None arrow: unknown or n/a
Hormone association: Thicker line: hormone related relationship         : hormone related Node
Node type:  Transcription factor or transcriptional regulator       Compound       Kinase
 Small regulatory RNA (miRNA & ta-siRNA)       Other nodes
No. Path
2 pal3  --  has product (in catalytic reaction)  --  Tans-Cinnamic acid
3 pal3  --  interacts with  --  AT2G44130
4 pal3  --  has similar expression pattern (mutual information value=1.16557) with  --  ATCSLB03; ATCSLB3; CSLB03
5 pal3  --  has similar expression pattern (mutual information value=1.16557) with  --  ATCSLB04; ATCSLB4; CSLB04; CSLB04
6 pal3  --  has similar expression pattern (mutual information value=0.910025) with  --  CRR6
7 pal3  --  has similar expression pattern (mutual information value=0.947504) with  --  ALB-1V; ALB1; CHLD; PDE166; V157
8 pal3  --  has similar expression pattern (mutual information value=0.909871) with  --  AT3G05350
9 pal3  --  has similar expression pattern (mutual information value=0.839309) with  --  AT3G16670
10 pal3  --  has similar expression pattern (mutual information value=0.843604) with  --  AT3G28040
11 pal3  --  has similar expression pattern (mutual information value=0.810655) with  --  AT1G66940
12 pal3  --  has similar expression pattern (mutual information value=0.906033) with  --  AT4G28080
13 pal3  --  has similar expression pattern (mutual information value=0.937004) with  --  CAO; CPSRP43
14 pal3  --  has similar expression pattern (mutual information value=0.930035) with  --  NDHC
15 pal3  --  is a member of  --  pal2 family111, coding gene
16 pal3  --  has product (in catalytic reaction)  --  Tans-Cinnamic acid  --  has product (in catalytic reaction)  --  Cinnamoyl-CoA
17 pal3  --  has product (in catalytic reaction)  --  Tans-Cinnamic acid  --  has product (in catalytic reaction)  --  nitric oxide
18 pal3  --  has product (in catalytic reaction)  --  Tans-Cinnamic acid  --  has product (in catalytic reaction)  --  Benzaldehyde
19 pal3  --  has product (in catalytic reaction)  --  Tans-Cinnamic acid  --  has product (in catalytic reaction)  --  O-coumarate
20 pal3  --  has product (in catalytic reaction)  --  Tans-Cinnamic acid  --  has product (in catalytic reaction)  --  para-Coumaric acid
21 pal3  --  has product (in catalytic reaction)  --  Tans-Cinnamic acid  --  is product (in catalytic reaction) of  --  Phenylalanine
22 pal3  --  has product (in catalytic reaction)  --  Tans-Cinnamic acid  --  is product (in catalytic reaction) of  --  pal4
23 pal3  --  has product (in catalytic reaction)  --  Tans-Cinnamic acid  --  is product (in catalytic reaction) of  --  pal1
24 pal3  --  interacts with  --  AT2G44130  --  interacts with  --  ATFLS1; FLS; FLS1
25 pal3  --  interacts with  --  AT2G44130  --  interacts with  --  DFR; M318; TT3
26 pal3  --  interacts with  --  AT2G44130  --  interacts with  --  ANS; LDOX; TDS4; TT18
27 pal3  --  interacts with  --  AT2G44130  --  interacts with  --  ATCHS; CHS; TT4
28 pal3  --  interacts with  --  AT2G44130  --  interacts with  --  ASK13; SK13
29 pal3  --  interacts with  --  AT2G44130  --  interacts with  --  ARR12
30 pal3  --  interacts with  --  AT2G44130  --  interacts with  --  ARR1
31 pal3  --  interacts with  --  AT2G44130  --  is the target gene of  --  ath-miR414
32 pal3  --  has similar expression pattern (mutual information value=1.16557) with  --  ATCSLB03; ATCSLB3; CSLB03  --  has similar expression pattern (mutual information value=0.830575) with  --  AST91; SULTR3;3
33 pal3  --  has similar expression pattern (mutual information value=1.16557) with  --  ATCSLB03; ATCSLB3; CSLB03  --  is the target gene of  --  ath-miR776
34 pal3  --  has similar expression pattern (mutual information value=0.910025) with  --  CRR6  --  has similar expression pattern (mutual information value=1.08843) with  --  ABC1; ATSIG1; ATSIG2; SIG1; SIG2; SIGA; SIGB
35 pal3  --  has similar expression pattern (mutual information value=0.910025) with  --  CRR6  --  has similar expression pattern (mutual information value=1.0558) with  --  emb2394
36 pal3  --  has similar expression pattern (mutual information value=0.910025) with  --  CRR6  --  has similar expression pattern (mutual information value=0.860156) with  --  ATCAF2; CAF2
37 pal3  --  has similar expression pattern (mutual information value=0.910025) with  --  CRR6  --  has similar expression pattern (mutual information value=1.00166) with  --  AT1G73110
38 pal3  --  has similar expression pattern (mutual information value=0.910025) with  --  CRR6  --  has similar expression pattern (mutual information value=1.05888) with  --  LPA3
39 pal3  --  has similar expression pattern (mutual information value=0.910025) with  --  CRR6  --  has similar expression pattern (mutual information value=1.061) with  --  AT1G49975
40 pal3  --  has similar expression pattern (mutual information value=0.910025) with  --  CRR6  --  has similar expression pattern (mutual information value=0.897123) with  --  AT1G68520
41 pal3  --  has similar expression pattern (mutual information value=0.910025) with  --  CRR6  --  has similar expression pattern (mutual information value=0.816504) with  --  AT3G06980
42 pal3  --  has similar expression pattern (mutual information value=0.910025) with  --  CRR6  --  has similar expression pattern (mutual information value=1.1932) with  --  AT1G18170
43 pal3  --  has similar expression pattern (mutual information value=0.910025) with  --  CRR6  --  has similar expression pattern (mutual information value=0.967144) with  --  AT3G60370
44 pal3  --  has similar expression pattern (mutual information value=0.910025) with  --  CRR6  --  has similar expression pattern (mutual information value=1.12033) with  --  AT5G51110
45 pal3  --  has similar expression pattern (mutual information value=0.910025) with  --  CRR6  --  has similar expression pattern (mutual information value=1.00862) with  --  AT5G65220
46 pal3  --  has similar expression pattern (mutual information value=0.947504) with  --  ALB-1V; ALB1; CHLD; PDE166; V157  --  has similar expression pattern (mutual information value=1.29034) with  --  DEGP2; EMB3117
47 pal3  --  has similar expression pattern (mutual information value=0.947504) with  --  ALB-1V; ALB1; CHLD; PDE166; V157  --  has similar expression pattern (mutual information value=1.29434) with  --  emb1473
48 pal3  --  has similar expression pattern (mutual information value=0.947504) with  --  ALB-1V; ALB1; CHLD; PDE166; V157  --  has similar expression pattern (mutual information value=1.31505) with  --  AT1G12800
49 pal3  --  has similar expression pattern (mutual information value=0.947504) with  --  ALB-1V; ALB1; CHLD; PDE166; V157  --  has similar expression pattern (mutual information value=1.49671) with  --  ATCYP38; CYP38
50 pal3  --  has similar expression pattern (mutual information value=0.947504) with  --  ALB-1V; ALB1; CHLD; PDE166; V157  --  has similar expression pattern (mutual information value=1.38111) with  --  RPL15
51 pal3  --  has similar expression pattern (mutual information value=0.947504) with  --  ALB-1V; ALB1; CHLD; PDE166; V157  --  has similar expression pattern (mutual information value=1.11383) with  --  HEME1
52 pal3  --  has similar expression pattern (mutual information value=0.947504) with  --  ALB-1V; ALB1; CHLD; PDE166; V157  --  has similar expression pattern (mutual information value=1.22542) with  --  EMB3126
53 pal3  --  has similar expression pattern (mutual information value=0.947504) with  --  ALB-1V; ALB1; CHLD; PDE166; V157  --  has similar expression pattern (mutual information value=1.09059) with  --  AT5G14260
54 pal3  --  has similar expression pattern (mutual information value=0.947504) with  --  ALB-1V; ALB1; CHLD; PDE166; V157  --  has similar expression pattern (mutual information value=1.09695) with  --  AT5G46420
55 pal3  --  has similar expression pattern (mutual information value=0.947504) with  --  ALB-1V; ALB1; CHLD; PDE166; V157  --  has similar expression pattern (mutual information value=1.28226) with  --  RPL9
56 pal3  --  has similar expression pattern (mutual information value=0.947504) with  --  ALB-1V; ALB1; CHLD; PDE166; V157  --  has product (in catalytic reaction)  --  Magnesium protoporphyrin
57 pal3  --  has similar expression pattern (mutual information value=0.909871) with  --  AT3G05350  --  interacts with  --  ATCAT6; CAT6
58 pal3  --  has similar expression pattern (mutual information value=0.909871) with  --  AT3G05350  --  interacts with  --  ACBK1; ATCNGC10; CNGC10
59 pal3  --  has similar expression pattern (mutual information value=0.909871) with  --  AT3G05350  --  interacts with  --  GLT1; PGLCT
60 pal3  --  has similar expression pattern (mutual information value=0.909871) with  --  AT3G05350  --  interacts with  --  ATPUP3; PUP3
61 pal3  --  has similar expression pattern (mutual information value=0.909871) with  --  AT3G05350  --  has similar expression pattern (mutual information value=1.06698) with  --  SCY1
62 pal3  --  has similar expression pattern (mutual information value=0.909871) with  --  AT3G05350  --  has similar expression pattern (mutual information value=0.988218) with  --  CLPP6; NCLPP1; NCLPP6
63 pal3  --  has similar expression pattern (mutual information value=0.909871) with  --  AT3G05350  --  has similar expression pattern (mutual information value=0.945692) with  --  AT3G14420
64 pal3  --  has similar expression pattern (mutual information value=0.909871) with  --  AT3G05350  --  has similar expression pattern (mutual information value=0.945692) with  --  AT3G14415
65 pal3  --  has similar expression pattern (mutual information value=0.909871) with  --  AT3G05350  --  has similar expression pattern (mutual information value=1.01445) with  --  FAD6; FADC; SFD4
66 pal3  --  has similar expression pattern (mutual information value=0.909871) with  --  AT3G05350  --  has similar expression pattern (mutual information value=0.976574) with  --  FTSH5; VAR1
67 pal3  --  has similar expression pattern (mutual information value=0.909871) with  --  AT3G05350  --  has similar expression pattern (mutual information value=1.02537) with  --  CLB4; CSB3; GCPE; HDS; ISPG
68 pal3  --  has similar expression pattern (mutual information value=0.909871) with  --  AT3G05350  --  is the target gene of  --  ath-miR5648-3p
69 pal3  --  has similar expression pattern (mutual information value=0.839309) with  --  AT3G16670  --  interacts with  --  AT1G10990
70 pal3  --  has similar expression pattern (mutual information value=0.839309) with  --  AT3G16670  --  interacts with  --  AT4G01410
71 pal3  --  has similar expression pattern (mutual information value=0.839309) with  --  AT3G16670  --  has similar expression pattern (mutual information value=0.854257) with  --  AT2G34620
72 pal3  --  has similar expression pattern (mutual information value=0.839309) with  --  AT3G16670  --  has similar expression pattern (mutual information value=0.871223) with  --  AT2G24090
73 pal3  --  has similar expression pattern (mutual information value=0.839309) with  --  AT3G16670  --  has similar expression pattern (mutual information value=0.901366) with  --  AT1G64510
74 pal3  --  has similar expression pattern (mutual information value=0.839309) with  --  AT3G16670  --  has similar expression pattern (mutual information value=0.994825) with  --  AT3G05730
75 pal3  --  has similar expression pattern (mutual information value=0.839309) with  --  AT3G16670  --  has similar expression pattern (mutual information value=0.80265) with  --  LTP6
76 pal3  --  has similar expression pattern (mutual information value=0.839309) with  --  AT3G16670  --  has similar expression pattern (mutual information value=0.936514) with  --  AT4G01150
77 pal3  --  has similar expression pattern (mutual information value=0.843604) with  --  AT3G28040  --  interacts with  --  AT4G27610
78 pal3  --  has similar expression pattern (mutual information value=0.843604) with  --  AT3G28040  --  interacts with  --  AT3G06600
79 pal3  --  has similar expression pattern (mutual information value=0.843604) with  --  AT3G28040  --  interacts with  --  GPT
80 pal3  --  has similar expression pattern (mutual information value=0.843604) with  --  AT3G28040  --  interacts with  --  LRR1
81 pal3  --  has similar expression pattern (mutual information value=0.843604) with  --  AT3G28040  --  interacts with  --  RKL1
82 pal3  --  has similar expression pattern (mutual information value=0.843604) with  --  AT3G28040  --  interacts with  --  AT2G26730
83 pal3  --  has similar expression pattern (mutual information value=0.843604) with  --  AT3G28040  --  interacts with  --  CLI1; RPK2; TOAD2
84 pal3  --  has similar expression pattern (mutual information value=0.843604) with  --  AT3G28040  --  interacts with  --  AT5G63930
85 pal3  --  has similar expression pattern (mutual information value=0.843604) with  --  AT3G28040  --  interacts with  --  SCM; SRF9; SUB
86 pal3  --  has similar expression pattern (mutual information value=0.843604) with  --  AT3G28040  --  interacts with  --  BIR1
87 pal3  --  has similar expression pattern (mutual information value=0.843604) with  --  AT3G28040  --  interacts with  --  ATPLC2; PLC2
88 pal3  --  has similar expression pattern (mutual information value=0.843604) with  --  AT3G28040  --  interacts with  --  AT2G16250
89 pal3  --  has similar expression pattern (mutual information value=0.843604) with  --  AT3G28040  --  interacts with  --  AT4G23740
90 pal3  --  has similar expression pattern (mutual information value=0.843604) with  --  AT3G28040  --  has similar expression pattern (mutual information value=0.832661) with  --  AT2G10940
91 pal3  --  has similar expression pattern (mutual information value=0.843604) with  --  AT3G28040  --  has similar expression pattern (mutual information value=0.809869) with  --  AT4G38840
92 pal3  --  has similar expression pattern (mutual information value=0.843604) with  --  AT3G28040  --  has similar expression pattern (mutual information value=0.878827) with  --  BAM2
93 pal3  --  has similar expression pattern (mutual information value=0.843604) with  --  AT3G28040  --  has similar expression pattern (mutual information value=0.855841) with  --  ACA1; ATACA1; CAH1
94 pal3  --  has similar expression pattern (mutual information value=0.843604) with  --  AT3G28040  --  has similar expression pattern (mutual information value=1.04121) with  --  AT5G13140
95 pal3  --  has similar expression pattern (mutual information value=0.810655) with  --  AT1G66940  --  has similar expression pattern (mutual information value=0.926098) with  --  AGP17; ATAGP17
96 pal3  --  has similar expression pattern (mutual information value=0.810655) with  --  AT1G66940  --  has similar expression pattern (mutual information value=1.03532) with  --  TBL45
97 pal3  --  has similar expression pattern (mutual information value=0.810655) with  --  AT1G66940  --  has similar expression pattern (mutual information value=0.835961) with  --  ATLTP1; LP1; LTP1
98 pal3  --  has similar expression pattern (mutual information value=0.810655) with  --  AT1G66940  --  has similar expression pattern (mutual information value=0.930218) with  --  CRB; CSP41B; HIP1.3
99 pal3  --  has similar expression pattern (mutual information value=0.810655) with  --  AT1G66940  --  has similar expression pattern (mutual information value=0.848161) with  --  LHCB2; LHCB2.1
100 pal3  --  has similar expression pattern (mutual information value=0.810655) with  --  AT1G66940  --  has similar expression pattern (mutual information value=0.848161) with  --  LHCB2; LHCB2.2
101 pal3  --  has similar expression pattern (mutual information value=0.810655) with  --  AT1G66940  --  has similar expression pattern (mutual information value=0.941464) with  --  AT1G06830
102 pal3  --  has similar expression pattern (mutual information value=0.810655) with  --  AT1G66940  --  has similar expression pattern (mutual information value=0.943406) with  --  ATGER1; GER1; GLP1
103 pal3  --  has similar expression pattern (mutual information value=0.810655) with  --  AT1G66940  --  has similar expression pattern (mutual information value=0.873558) with  --  AB165; CAB2; LHCB1.1
104 pal3  --  has similar expression pattern (mutual information value=0.810655) with  --  AT1G66940  --  has similar expression pattern (mutual information value=0.873558) with  --  AB180; CAB3; LHCB1.2
105 pal3  --  has similar expression pattern (mutual information value=0.810655) with  --  AT1G66940  --  has similar expression pattern (mutual information value=0.873558) with  --  AB140; CAB1; CAB140; LHCB1.3
106 pal3  --  has similar expression pattern (mutual information value=0.810655) with  --  AT1G66940  --  has similar expression pattern (mutual information value=0.883238) with  --  PETC; PGR1
107 pal3  --  has similar expression pattern (mutual information value=0.810655) with  --  AT1G66940  --  has similar expression pattern (mutual information value=0.842895) with  --  FBA2
108 pal3  --  has similar expression pattern (mutual information value=0.810655) with  --  AT1G66940  --  has similar expression pattern (mutual information value=0.819168) with  --  GUN4
109 pal3  --  has similar expression pattern (mutual information value=0.810655) with  --  AT1G66940  --  has similar expression pattern (mutual information value=0.818116) with  --  AT5G48490
110 pal3  --  has similar expression pattern (mutual information value=0.810655) with  --  AT1G66940  --  has similar expression pattern (mutual information value=0.856108) with  --  RCA
111 pal3  --  has similar expression pattern (mutual information value=0.906033) with  --  AT4G28080  --  has similar expression pattern (mutual information value=1.20377) with  --  AT1G01320
112 pal3  --  has similar expression pattern (mutual information value=0.906033) with  --  AT4G28080  --  has similar expression pattern (mutual information value=1.11356) with  --  AT1G74470
113 pal3  --  has similar expression pattern (mutual information value=0.906033) with  --  AT4G28080  --  has similar expression pattern (mutual information value=1.04527) with  --  MRL1; PDE346
114 pal3  --  has similar expression pattern (mutual information value=0.906033) with  --  AT4G28080  --  has similar expression pattern (mutual information value=1.11129) with  --  SBPASE
115 pal3  --  has similar expression pattern (mutual information value=0.906033) with  --  AT4G28080  --  has similar expression pattern (mutual information value=1.00534) with  --  ACSF; CHL27; CRD1
116 pal3  --  has similar expression pattern (mutual information value=0.906033) with  --  AT4G28080  --  has similar expression pattern (mutual information value=1.09225) with  --  psy
117 pal3  --  has similar expression pattern (mutual information value=0.906033) with  --  AT4G28080  --  has similar expression pattern (mutual information value=0.902738) with  --  LIL3:2
118 pal3  --  has similar expression pattern (mutual information value=0.906033) with  --  AT4G28080  --  has similar expression pattern (mutual information value=0.809485) with  --  BETA CA2; CA18; CA2
119 pal3  --  has similar expression pattern (mutual information value=0.906033) with  --  AT4G28080  --  has similar expression pattern (mutual information value=1.05683) with  --  ATCAO; CAO; CH1
120 pal3  --  has similar expression pattern (mutual information value=0.937004) with  --  CAO; CPSRP43  --  interacts with  --  AT4G10930
121 pal3  --  has similar expression pattern (mutual information value=0.937004) with  --  CAO; CPSRP43  --  interacts with  --  PTF1; TCP13; TFPD
122 pal3  --  has similar expression pattern (mutual information value=0.937004) with  --  CAO; CPSRP43  --  interacts with  --  AT4G29930
123 pal3  --  has similar expression pattern (mutual information value=0.937004) with  --  CAO; CPSRP43  --  interacts with  --  TOE2
124 pal3  --  has similar expression pattern (mutual information value=0.937004) with  --  CAO; CPSRP43  --  interacts with  --  ATHSP23.6-MITO; HSP23.6-MITO
125 pal3  --  has similar expression pattern (mutual information value=0.937004) with  --  CAO; CPSRP43  --  interacts with  --  ANAC059; ATNAC3; NAC3; ORS1
126 pal3  --  has similar expression pattern (mutual information value=0.937004) with  --  CAO; CPSRP43  --  interacts with  --  ALB3
127 pal3  --  has similar expression pattern (mutual information value=0.937004) with  --  CAO; CPSRP43  --  interacts with  --  54CP; CPSRP54; FFC; SRP54CP
128 pal3  --  has similar expression pattern (mutual information value=0.937004) with  --  CAO; CPSRP43  --  interacts with  --  EMB3003
129 pal3  --  has similar expression pattern (mutual information value=0.937004) with  --  CAO; CPSRP43  --  interacts with  --  GATA28; TIFY2A; ZML2
130 pal3  --  has similar expression pattern (mutual information value=0.937004) with  --  CAO; CPSRP43  --  interacts with  --  AT1G52560
131 pal3  --  has similar expression pattern (mutual information value=0.937004) with  --  CAO; CPSRP43  --  has similar expression pattern (mutual information value=1.23326) with  --  PSAD-1
132 pal3  --  has similar expression pattern (mutual information value=0.937004) with  --  CAO; CPSRP43  --  has similar expression pattern (mutual information value=1.22492) with  --  CHLM
133 pal3  --  has similar expression pattern (mutual information value=0.937004) with  --  CAO; CPSRP43  --  has similar expression pattern (mutual information value=0.946272) with  --  AT5G16030
134 pal3  --  has similar expression pattern (mutual information value=0.937004) with  --  CAO; CPSRP43  --  has similar expression pattern (mutual information value=1.08259) with  --  PSBY; YCF32
135 pal3  --  has similar expression pattern (mutual information value=0.930035) with  --  NDHC  --  has similar expression pattern (mutual information value=0.897797) with  --  JAC1
136 pal3  --  has similar expression pattern (mutual information value=0.930035) with  --  NDHC  --  has similar expression pattern (mutual information value=1.0543) with  --  AT4G10060
137 pal3  --  has similar expression pattern (mutual information value=0.930035) with  --  NDHC  --  has similar expression pattern (mutual information value=0.813074) with  --  CLB6; HDR; ISPH
138 pal3  --  has similar expression pattern (mutual information value=0.930035) with  --  NDHC  --  has similar expression pattern (mutual information value=0.907102) with  --  AT3G48200
139 pal3  --  has similar expression pattern (mutual information value=0.930035) with  --  NDHC  --  has similar expression pattern (mutual information value=0.948671) with  --  PSBL
140 pal3  --  has similar expression pattern (mutual information value=0.930035) with  --  NDHC  --  has similar expression pattern (mutual information value=0.865019) with  --  YCF9
141 pal3  --  has similar expression pattern (mutual information value=0.930035) with  --  NDHC  --  has similar expression pattern (mutual information value=0.969277) with  --  PSBM
142 pal3  --  has similar expression pattern (mutual information value=0.930035) with  --  NDHC  --  has similar expression pattern (mutual information value=0.880805) with  --  NDHI
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