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A Graph Search-Empowered Integrative Database of Arabidopsis Signaling Transduction, Metabolism and Gene Regulation Networks   
Location:  Home > Details for node AT5G28550
Type: Protein GRN ID: np40673 Name:
Annotation: BEST Arabidopsis thaliana protein match is: homolog of separase (TAIR:AT4G22970.2); Has 25 Blast hits to 25 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Gene Locus: AT5G28550
Gene Expression (Affy ATH1 probeset): 255916_at    
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 Protein modification
 Protein-protein interaction
        also include predicted relationship
 Compound-protein interaction
 TF-target gene regulation
 Small RNA-target regulation
        also include predicted relationship
 Carrier and transported molecule
 Catalytic chemical reaction
 Co-expressed gene pair
        with mutual information value >

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Relationship type:  protein modification     catalytic chemical reaction     protein-protein interaction    
compound-protein interaction     TF-target gene regulation     small RNA-target regulation    
co-expressed gene pair     carrier and transported molecule     family/complex and member
Relationship evidence:  Solid line: validated          Dashed line: predicted
Relationship direction: Arrow: positive          T shape: negative          None arrow: unknown or n/a
Hormone association: Thicker line: hormone related relationship         : hormone related Node
Node type:  Transcription factor or transcriptional regulator       Compound       Kinase
 Small regulatory RNA (miRNA & ta-siRNA)       Other nodes
No. Path
2 AT5G28550  --  has similar expression pattern (mutual information value=0.803834) with  --  AT2G07070
3 AT5G28550  --  has similar expression pattern (mutual information value=0.807051) with  --  AT3G04170
4 AT5G28550  --  has similar expression pattern (mutual information value=0.820659) with  --  AT5G35300
5 AT5G28550  --  has similar expression pattern (mutual information value=0.825891) with  --  AT5G20760
6 AT5G28550  --  has similar expression pattern (mutual information value=0.803834) with  --  AT2G07070  --  has similar expression pattern (mutual information value=0.90044) with  --  AT2G02515
7 AT5G28550  --  has similar expression pattern (mutual information value=0.803834) with  --  AT2G07070  --  has similar expression pattern (mutual information value=1.0678) with  --  AT2G18820
8 AT5G28550  --  has similar expression pattern (mutual information value=0.803834) with  --  AT2G07070  --  has similar expression pattern (mutual information value=0.814403) with  --  AT2G16835
9 AT5G28550  --  has similar expression pattern (mutual information value=0.803834) with  --  AT2G07070  --  has similar expression pattern (mutual information value=0.821759) with  --  AT2G15720
10 AT5G28550  --  has similar expression pattern (mutual information value=0.803834) with  --  AT2G07070  --  has similar expression pattern (mutual information value=0.863049) with  --  LLG2
11 AT5G28550  --  has similar expression pattern (mutual information value=0.803834) with  --  AT2G07070  --  has similar expression pattern (mutual information value=0.915889) with  --  AT2G16690
12 AT5G28550  --  has similar expression pattern (mutual information value=0.803834) with  --  AT2G07070  --  has similar expression pattern (mutual information value=0.87736) with  --  AT1G24640
13 AT5G28550  --  has similar expression pattern (mutual information value=0.803834) with  --  AT2G07070  --  has similar expression pattern (mutual information value=0.845939) with  --  AT2G17910
14 AT5G28550  --  has similar expression pattern (mutual information value=0.803834) with  --  AT2G07070  --  has similar expression pattern (mutual information value=0.808895) with  --  AT2G27900
15 AT5G28550  --  has similar expression pattern (mutual information value=0.803834) with  --  AT2G07070  --  has similar expression pattern (mutual information value=0.922535) with  --  AT2G16000
16 AT5G28550  --  has similar expression pattern (mutual information value=0.803834) with  --  AT2G07070  --  has similar expression pattern (mutual information value=0.86138) with  --  ARF12
17 AT5G28550  --  has similar expression pattern (mutual information value=0.803834) with  --  AT2G07070  --  has similar expression pattern (mutual information value=0.985829) with  --  AtMYB113; MYB113
18 AT5G28550  --  has similar expression pattern (mutual information value=0.803834) with  --  AT2G07070  --  has similar expression pattern (mutual information value=0.979443) with  --  AT1G42650
19 AT5G28550  --  has similar expression pattern (mutual information value=0.803834) with  --  AT2G07070  --  has similar expression pattern (mutual information value=1.00278) with  --  AT4G03950
20 AT5G28550  --  has similar expression pattern (mutual information value=0.803834) with  --  AT2G07070  --  has similar expression pattern (mutual information value=0.854384) with  --  AtENODL12; ENODL12
21 AT5G28550  --  has similar expression pattern (mutual information value=0.803834) with  --  AT2G07070  --  has similar expression pattern (mutual information value=0.867168) with  --  DOF4.7
22 AT5G28550  --  has similar expression pattern (mutual information value=0.803834) with  --  AT2G07070  --  has similar expression pattern (mutual information value=0.984754) with  --  AT5G10420
23 AT5G28550  --  has similar expression pattern (mutual information value=0.803834) with  --  AT2G07070  --  has similar expression pattern (mutual information value=0.926146) with  --  AT5G47130
24 AT5G28550  --  has similar expression pattern (mutual information value=0.803834) with  --  AT2G07070  --  has similar expression pattern (mutual information value=1.15609) with  --  AT5G54220
25 AT5G28550  --  has similar expression pattern (mutual information value=0.803834) with  --  AT2G07070  --  has similar expression pattern (mutual information value=0.829259) with  --  ABCG28
26 AT5G28550  --  has similar expression pattern (mutual information value=0.803834) with  --  AT2G07070  --  has similar expression pattern (mutual information value=1.07) with  --  ATPUP3; PUP3
27 AT5G28550  --  has similar expression pattern (mutual information value=0.803834) with  --  AT2G07070  --  has similar expression pattern (mutual information value=0.942081) with  --  AT4G15750
28 AT5G28550  --  has similar expression pattern (mutual information value=0.807051) with  --  AT3G04170  --  has similar expression pattern (mutual information value=0.832194) with  --  LBD10
29 AT5G28550  --  has similar expression pattern (mutual information value=0.807051) with  --  AT3G04170  --  has similar expression pattern (mutual information value=0.826825) with  --  AT2G25565
30 AT5G28550  --  has similar expression pattern (mutual information value=0.807051) with  --  AT3G04170  --  has similar expression pattern (mutual information value=0.917203) with  --  AT2G16110
31 AT5G28550  --  has similar expression pattern (mutual information value=0.807051) with  --  AT3G04170  --  has similar expression pattern (mutual information value=0.828624) with  --  AT2G35080
32 AT5G28550  --  has similar expression pattern (mutual information value=0.807051) with  --  AT3G04170  --  has similar expression pattern (mutual information value=0.872782) with  --  sks10
33 AT5G28550  --  has similar expression pattern (mutual information value=0.807051) with  --  AT3G04170  --  has similar expression pattern (mutual information value=0.874865) with  --  AT5G19810
34 AT5G28550  --  has similar expression pattern (mutual information value=0.820659) with  --  AT5G35300  --  has similar expression pattern (mutual information value=0.91551) with  --  ATSUC8; SUC8
35 AT5G28550  --  has similar expression pattern (mutual information value=0.820659) with  --  AT5G35300  --  has similar expression pattern (mutual information value=0.85689) with  --  AGL5; SHP2
36 AT5G28550  --  has similar expression pattern (mutual information value=0.820659) with  --  AT5G35300  --  has similar expression pattern (mutual information value=0.882834) with  --  AT1G35617
37 AT5G28550  --  has similar expression pattern (mutual information value=0.820659) with  --  AT5G35300  --  has similar expression pattern (mutual information value=0.883421) with  --  AT1G34440
38 AT5G28550  --  has similar expression pattern (mutual information value=0.820659) with  --  AT5G35300  --  has similar expression pattern (mutual information value=0.813792) with  --  AT1G35880
39 AT5G28550  --  has similar expression pattern (mutual information value=0.820659) with  --  AT5G35300  --  has similar expression pattern (mutual information value=0.802308) with  --  AT3G45720
40 AT5G28550  --  has similar expression pattern (mutual information value=0.820659) with  --  AT5G35300  --  has similar expression pattern (mutual information value=0.863152) with  --  AT3G46360
41 AT5G28550  --  has similar expression pattern (mutual information value=0.820659) with  --  AT5G35300  --  has similar expression pattern (mutual information value=0.902881) with  --  AT3G49480
42 AT5G28550  --  has similar expression pattern (mutual information value=0.820659) with  --  AT5G35300  --  has similar expression pattern (mutual information value=0.965823) with  --  AT5G43800
43 AT5G28550  --  has similar expression pattern (mutual information value=0.820659) with  --  AT5G35300  --  has similar expression pattern (mutual information value=0.932964) with  --  AtMYB103; ATMYB80; MS188; MYB103; MYB80
44 AT5G28550  --  has similar expression pattern (mutual information value=0.820659) with  --  AT5G35300  --  has similar expression pattern (mutual information value=0.910396) with  --  AT4G17580
45 AT5G28550  --  has similar expression pattern (mutual information value=0.825891) with  --  AT5G20760  --  has similar expression pattern (mutual information value=0.893838) with  --  AT2G01240
46 AT5G28550  --  has similar expression pattern (mutual information value=0.825891) with  --  AT5G20760  --  has similar expression pattern (mutual information value=0.846088) with  --  AT2G10740
47 AT5G28550  --  has similar expression pattern (mutual information value=0.825891) with  --  AT5G20760  --  has similar expression pattern (mutual information value=0.815448) with  --  AT1G53810
48 AT5G28550  --  has similar expression pattern (mutual information value=0.825891) with  --  AT5G20760  --  has similar expression pattern (mutual information value=0.924445) with  --  AT3G44070
49 AT5G28550  --  has similar expression pattern (mutual information value=0.825891) with  --  AT5G20760  --  has similar expression pattern (mutual information value=0.819707) with  --  AT5G40050
50 AT5G28550  --  has similar expression pattern (mutual information value=0.825891) with  --  AT5G20760  --  has similar expression pattern (mutual information value=0.813371) with  --  AT5G27510
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