Screen Resolution:     
Welcome to HRGRN
A Graph Search-Empowered Integrative Database of Arabidopsis Signaling Transduction, Metabolism and Gene Regulation Networks   
Location:  Home > Details for node EMB1006
Type: Protein GRN ID: np39781 Name: EMB1006
Annotation: EMB1006 | Pentatricopeptide repeat (PPR) superfamily protein
Gene Locus: AT5G50280
Gene Expression (Affy ATH1 probeset): 248547_at    
Graph Customization
   
Choose color for highlight:  
Display edge: validated and predicted
Display node/edge prompt:
Layout:
 as format     
Data Filter
 Protein modification
 Protein-protein interaction
        also include predicted relationship
 Compound-protein interaction
 TF-target gene regulation
 Small RNA-target regulation
        also include predicted relationship
 Carrier and transported molecule
 Catalytic chemical reaction
 Co-expressed gene pair
        with mutual information value >

  Ignore nodes having > relationships
 
Relationship type:  protein modification     catalytic chemical reaction     protein-protein interaction    
compound-protein interaction     TF-target gene regulation     small RNA-target regulation    
co-expressed gene pair     carrier and transported molecule     family/complex and member
Relationship evidence:  Solid line: validated          Dashed line: predicted
Relationship direction: Arrow: positive          T shape: negative          None arrow: unknown or n/a
Hormone association: Thicker line: hormone related relationship         : hormone related Node
Node type:  Transcription factor or transcriptional regulator       Compound       Kinase
 Small regulatory RNA (miRNA & ta-siRNA)       Other nodes
No. Path
2 EMB1006  --  has similar expression pattern (mutual information value=0.929982) with  --  PTAC6
3 EMB1006  --  has similar expression pattern (mutual information value=1.02599) with  --  AT3G07670
4 EMB1006  --  has similar expression pattern (mutual information value=0.923968) with  --  AT4G37510
5 EMB1006  --  has similar expression pattern (mutual information value=0.934713) with  --  AT5G02710
6 EMB1006  --  has similar expression pattern (mutual information value=0.929982) with  --  PTAC6  --  has similar expression pattern (mutual information value=0.960036) with  --  MAP1B; MAP1C
7 EMB1006  --  has similar expression pattern (mutual information value=0.929982) with  --  PTAC6  --  has similar expression pattern (mutual information value=1.03852) with  --  AT3G18680
8 EMB1006  --  has similar expression pattern (mutual information value=0.929982) with  --  PTAC6  --  has similar expression pattern (mutual information value=0.804447) with  --  ATSS4; SS4; SSIV
9 EMB1006  --  has similar expression pattern (mutual information value=0.929982) with  --  PTAC6  --  has similar expression pattern (mutual information value=0.905695) with  --  AT4G24090
10 EMB1006  --  has similar expression pattern (mutual information value=0.929982) with  --  PTAC6  --  has similar expression pattern (mutual information value=0.812437) with  --  AT3G52155
11 EMB1006  --  has similar expression pattern (mutual information value=0.929982) with  --  PTAC6  --  has similar expression pattern (mutual information value=0.869736) with  --  AT5G48590
12 EMB1006  --  has similar expression pattern (mutual information value=0.929982) with  --  PTAC6  --  has similar expression pattern (mutual information value=0.834338) with  --  AT5G64380
13 EMB1006  --  has similar expression pattern (mutual information value=1.02599) with  --  AT3G07670  --  interacts with  --  PRA1.F3; PRA8
14 EMB1006  --  has similar expression pattern (mutual information value=1.02599) with  --  AT3G07670  --  interacts with  --  AT1G14340
15 EMB1006  --  has similar expression pattern (mutual information value=1.02599) with  --  AT3G07670  --  has similar expression pattern (mutual information value=1.07406) with  --  AT1G60230
16 EMB1006  --  has similar expression pattern (mutual information value=1.02599) with  --  AT3G07670  --  has similar expression pattern (mutual information value=0.9282) with  --  ABCD2
17 EMB1006  --  has similar expression pattern (mutual information value=1.02599) with  --  AT3G07670  --  has similar expression pattern (mutual information value=1.05307) with  --  AT1G49380
18 EMB1006  --  has similar expression pattern (mutual information value=1.02599) with  --  AT3G07670  --  has similar expression pattern (mutual information value=0.845001) with  --  AT1G53120
19 EMB1006  --  has similar expression pattern (mutual information value=1.02599) with  --  AT3G07670  --  has similar expression pattern (mutual information value=0.826156) with  --  AT3G10350
20 EMB1006  --  has similar expression pattern (mutual information value=1.02599) with  --  AT3G07670  --  has similar expression pattern (mutual information value=0.934597) with  --  ATDFC; DFC; FPGS2
21 EMB1006  --  has similar expression pattern (mutual information value=1.02599) with  --  AT3G07670  --  has similar expression pattern (mutual information value=0.916358) with  --  AT3G02060
22 EMB1006  --  has similar expression pattern (mutual information value=1.02599) with  --  AT3G07670  --  has similar expression pattern (mutual information value=1.00737) with  --  ATAB2
23 EMB1006  --  has similar expression pattern (mutual information value=1.02599) with  --  AT3G07670  --  has similar expression pattern (mutual information value=1.12963) with  --  AT3G02450
24 EMB1006  --  has similar expression pattern (mutual information value=1.02599) with  --  AT3G07670  --  has similar expression pattern (mutual information value=0.952702) with  --  EMB2083
25 EMB1006  --  has similar expression pattern (mutual information value=1.02599) with  --  AT3G07670  --  has similar expression pattern (mutual information value=0.941022) with  --  AT3G28460
26 EMB1006  --  has similar expression pattern (mutual information value=1.02599) with  --  AT3G07670  --  has similar expression pattern (mutual information value=0.90796) with  --  ATKRS-2; OVA5
27 EMB1006  --  has similar expression pattern (mutual information value=1.02599) with  --  AT3G07670  --  has similar expression pattern (mutual information value=1.09495) with  --  AT3G20930
28 EMB1006  --  has similar expression pattern (mutual information value=1.02599) with  --  AT3G07670  --  has similar expression pattern (mutual information value=0.877614) with  --  AT3G22150
29 EMB1006  --  has similar expression pattern (mutual information value=1.02599) with  --  AT3G07670  --  has similar expression pattern (mutual information value=0.871136) with  --  PTAC14
30 EMB1006  --  has similar expression pattern (mutual information value=1.02599) with  --  AT3G07670  --  has similar expression pattern (mutual information value=1.17426) with  --  AT4G26370
31 EMB1006  --  has similar expression pattern (mutual information value=1.02599) with  --  AT3G07670  --  has similar expression pattern (mutual information value=1.02996) with  --  NARA5
32 EMB1006  --  has similar expression pattern (mutual information value=1.02599) with  --  AT3G07670  --  has similar expression pattern (mutual information value=0.969207) with  --  AT3G43540
33 EMB1006  --  has similar expression pattern (mutual information value=1.02599) with  --  AT3G07670  --  has similar expression pattern (mutual information value=1.08704) with  --  ATNOA1; ATNOS1; NOA1; NOS1; RIF1
34 EMB1006  --  has similar expression pattern (mutual information value=1.02599) with  --  AT3G07670  --  has similar expression pattern (mutual information value=0.832345) with  --  AT5G03900
35 EMB1006  --  has similar expression pattern (mutual information value=1.02599) with  --  AT3G07670  --  has similar expression pattern (mutual information value=0.886275) with  --  SVR3
36 EMB1006  --  has similar expression pattern (mutual information value=1.02599) with  --  AT3G07670  --  has similar expression pattern (mutual information value=0.942546) with  --  AT5G14460
37 EMB1006  --  has similar expression pattern (mutual information value=1.02599) with  --  AT3G07670  --  has similar expression pattern (mutual information value=0.917944) with  --  EMB139; EMB506
38 EMB1006  --  has similar expression pattern (mutual information value=1.02599) with  --  AT3G07670  --  has similar expression pattern (mutual information value=0.916618) with  --  scpl42
39 EMB1006  --  has similar expression pattern (mutual information value=1.02599) with  --  AT3G07670  --  has similar expression pattern (mutual information value=1.13194) with  --  LPA2
40 EMB1006  --  has similar expression pattern (mutual information value=1.02599) with  --  AT3G07670  --  has similar expression pattern (mutual information value=1.17096) with  --  AtPLR1; PLR1
41 EMB1006  --  has similar expression pattern (mutual information value=1.02599) with  --  AT3G07670  --  has similar expression pattern (mutual information value=0.913764) with  --  CRR21
42 EMB1006  --  has similar expression pattern (mutual information value=0.923968) with  --  AT4G37510  --  has similar expression pattern (mutual information value=0.913487) with  --  AT1G04420
43 EMB1006  --  has similar expression pattern (mutual information value=0.923968) with  --  AT4G37510  --  has similar expression pattern (mutual information value=0.957592) with  --  AT1G14030
44 EMB1006  --  has similar expression pattern (mutual information value=0.923968) with  --  AT4G37510  --  has similar expression pattern (mutual information value=0.95294) with  --  AT3G04550
45 EMB1006  --  has similar expression pattern (mutual information value=0.923968) with  --  AT4G37510  --  has similar expression pattern (mutual information value=1.0089) with  --  AT3G19810
46 EMB1006  --  has similar expression pattern (mutual information value=0.923968) with  --  AT4G37510  --  has similar expression pattern (mutual information value=0.93747) with  --  PGR3
47 EMB1006  --  has similar expression pattern (mutual information value=0.923968) with  --  AT4G37510  --  has similar expression pattern (mutual information value=0.979307) with  --  AT4G39040
48 EMB1006  --  has similar expression pattern (mutual information value=0.923968) with  --  AT4G37510  --  has similar expression pattern (mutual information value=0.942293) with  --  CP31B
49 EMB1006  --  has similar expression pattern (mutual information value=0.934713) with  --  AT5G02710  --  has similar expression pattern (mutual information value=0.836268) with  --  AT4G03150
50 EMB1006  --  has similar expression pattern (mutual information value=0.934713) with  --  AT5G02710  --  has similar expression pattern (mutual information value=1.08218) with  --  PAM68
51 EMB1006  --  has similar expression pattern (mutual information value=0.934713) with  --  AT5G02710  --  has similar expression pattern (mutual information value=0.939446) with  --  AT3G60370
52 EMB1006  --  has similar expression pattern (mutual information value=0.934713) with  --  AT5G02710  --  has similar expression pattern (mutual information value=1.11114) with  --  AT5G38290
53 EMB1006  --  has similar expression pattern (mutual information value=0.934713) with  --  AT5G02710  --  has similar expression pattern (mutual information value=0.852776) with  --  AT5G44520
54 EMB1006  --  has similar expression pattern (mutual information value=0.934713) with  --  AT5G02710  --  has similar expression pattern (mutual information value=0.883539) with  --  AT1G26180
55 EMB1006  --  has similar expression pattern (mutual information value=0.934713) with  --  AT5G02710  --  has similar expression pattern (mutual information value=0.867527) with  --  AT1G45230
   Funding by the National Science Foundation    Funding by the Oklahoma Center for the Advancement of Science & Technology    Additional funding by the Samuel Roberts Noble Foundation

Copyright © The Zhao Lab

Disclaimer | Contact