Screen Resolution:     
Welcome to HRGRN
A Graph Search-Empowered Integrative Database of Arabidopsis Signaling Transduction, Metabolism and Gene Regulation Networks   
Location:  Home > Details for node AT5G51590
Type: Protein GRN ID: np39161 Name:
Annotation: AT hook motif DNA-binding family protein
Gene Locus: AT5G51590
Gene Expression (Affy ATH1 probeset): 248412_at    
Graph Customization
   
Choose color for highlight:  
Display edge: validated and predicted
Display node/edge prompt:
Layout:
 as format     
Data Filter
 Protein modification
 Protein-protein interaction
        also include predicted relationship
 Compound-protein interaction
 TF-target gene regulation
 Small RNA-target regulation
        also include predicted relationship
 Carrier and transported molecule
 Catalytic chemical reaction
 Co-expressed gene pair
        with mutual information value >

  Ignore nodes having > relationships
 
Relationship type:  protein modification     catalytic chemical reaction     protein-protein interaction    
compound-protein interaction     TF-target gene regulation     small RNA-target regulation    
co-expressed gene pair     carrier and transported molecule     family/complex and member
Relationship evidence:  Solid line: validated          Dashed line: predicted
Relationship direction: Arrow: positive          T shape: negative          None arrow: unknown or n/a
Hormone association: Thicker line: hormone related relationship         : hormone related Node
Node type:  Transcription factor or transcriptional regulator       Compound       Kinase
 Small regulatory RNA (miRNA & ta-siRNA)       Other nodes
No. Path
2 AT5G51590  --  interacts with  --  AT4G25320
3 AT5G51590  --  has similar expression pattern (mutual information value=0.825672) with  --  AT5G27850
4 AT5G51590  --  interacts with  --  AT4G25320  --  interacts with  --  AT5G62260
5 AT5G51590  --  interacts with  --  AT4G25320  --  interacts with  --  AT1G63470
6 AT5G51590  --  interacts with  --  AT4G25320  --  interacts with  --  AHL1; ATAHL1
7 AT5G51590  --  has similar expression pattern (mutual information value=0.825672) with  --  AT5G27850  --  interacts with  --  ATCDPK2/CPK11
8 AT5G51590  --  has similar expression pattern (mutual information value=0.825672) with  --  AT5G27850  --  has similar expression pattern (mutual information value=1.10502) with  --  AML1; ATRPS5A; RPS5A
9 AT5G51590  --  has similar expression pattern (mutual information value=0.825672) with  --  AT5G27850  --  has similar expression pattern (mutual information value=0.946163) with  --  AT1G15930
10 AT5G51590  --  has similar expression pattern (mutual information value=0.825672) with  --  AT5G27850  --  has similar expression pattern (mutual information value=1.17944) with  --  AT1G08360
11 AT5G51590  --  has similar expression pattern (mutual information value=0.825672) with  --  AT5G27850  --  has similar expression pattern (mutual information value=0.864995) with  --  AT4G10320
12 AT5G51590  --  has similar expression pattern (mutual information value=0.825672) with  --  AT5G27850  --  has similar expression pattern (mutual information value=1.4526) with  --  RPL24; RPL24B; STV1
13 AT5G51590  --  has similar expression pattern (mutual information value=0.825672) with  --  AT5G27850  --  has similar expression pattern (mutual information value=1.02481) with  --  ATEIF3E-1; ATINT6; EIF3E; INT-6; INT6; TIF3E1
14 AT5G51590  --  has similar expression pattern (mutual information value=0.825672) with  --  AT5G27850  --  has similar expression pattern (mutual information value=1.35721) with  --  EMB3010; RPS6B
15 AT5G51590  --  has similar expression pattern (mutual information value=0.825672) with  --  AT5G27850  --  has similar expression pattern (mutual information value=1.19268) with  --  AT5G22440
16 AT5G51590  --  has similar expression pattern (mutual information value=0.825672) with  --  AT5G27850  --  has similar expression pattern (mutual information value=1.0842) with  --  AT5G49560
17 AT5G51590  --  has similar expression pattern (mutual information value=0.825672) with  --  AT5G27850  --  has similar expression pattern (mutual information value=0.855301) with  --  AT5G27470
   Funding by the National Science Foundation    Funding by the Oklahoma Center for the Advancement of Science & Technology    Additional funding by the Samuel Roberts Noble Foundation

Copyright © The Zhao Lab

Disclaimer | Contact