Screen Resolution:     
Welcome to HRGRN
A Graph Search-Empowered Integrative Database of Arabidopsis Signaling Transduction, Metabolism and Gene Regulation Networks   
Location:  Home > Details for node AT5G06420
Type: Protein GRN ID: np36432 Name:
Annotation: Zinc finger (CCCH-type/C3HC4-type RING finger) family protein
Gene Locus: AT5G06420
Transcription factor /
transcriptional regulator:		 transcription factor family C3H
Gene Expression (Affy ATH1 probeset): 250736_s_at    
Graph Customization
   
Choose color for highlight:  
Display edge: validated and predicted
Display node/edge prompt:
Layout:
 as format     
Data Filter
 Protein modification
 Protein-protein interaction
        also include predicted relationship
 Compound-protein interaction
 TF-target gene regulation
 Small RNA-target regulation
        also include predicted relationship
 Carrier and transported molecule
 Catalytic chemical reaction
 Co-expressed gene pair
        with mutual information value >

  Ignore nodes having > relationships
 
Relationship type:  protein modification     catalytic chemical reaction     protein-protein interaction    
compound-protein interaction     TF-target gene regulation     small RNA-target regulation    
co-expressed gene pair     carrier and transported molecule     family/complex and member
Relationship evidence:  Solid line: validated          Dashed line: predicted
Relationship direction: Arrow: positive          T shape: negative          None arrow: unknown or n/a
Hormone association: Thicker line: hormone related relationship         : hormone related Node
Node type:  Transcription factor or transcriptional regulator       Compound       Kinase
 Small regulatory RNA (miRNA & ta-siRNA)       Other nodes
No. Path
2 AT5G06420  --  is the target gene of  --  ath-miR851-3p
3 AT5G06420  --  has similar expression pattern (mutual information value=1.10725) with  --  AT1G02330
4 AT5G06420  --  has similar expression pattern (mutual information value=0.837997) with  --  AT5G13970
5 AT5G06420  --  has similar expression pattern (mutual information value=0.999669) with  --  AT5G51130
6 AT5G06420  --  is the target gene of  --  ath-miR851-3p  --  inhibit the expression of  --  AT1G01080
7 AT5G06420  --  has similar expression pattern (mutual information value=1.10725) with  --  AT1G02330  --  has similar expression pattern (mutual information value=0.979961) with  --  AT2G44200
8 AT5G06420  --  has similar expression pattern (mutual information value=1.10725) with  --  AT1G02330  --  has similar expression pattern (mutual information value=0.854588) with  --  AT2G19270
9 AT5G06420  --  has similar expression pattern (mutual information value=1.10725) with  --  AT1G02330  --  has similar expression pattern (mutual information value=1.16199) with  --  ATCSN2; COP12; CSN2; FUS12
10 AT5G06420  --  has similar expression pattern (mutual information value=1.10725) with  --  AT1G02330  --  has similar expression pattern (mutual information value=0.878278) with  --  AT2G27285
11 AT5G06420  --  has similar expression pattern (mutual information value=1.10725) with  --  AT1G02330  --  has similar expression pattern (mutual information value=1.00372) with  --  AT2G24830
12 AT5G06420  --  has similar expression pattern (mutual information value=1.10725) with  --  AT1G02330  --  has similar expression pattern (mutual information value=0.877674) with  --  AT1G65220
13 AT5G06420  --  has similar expression pattern (mutual information value=1.10725) with  --  AT1G02330  --  has similar expression pattern (mutual information value=0.883541) with  --  ATDSS1(I); DSS1(I)
14 AT5G06420  --  has similar expression pattern (mutual information value=1.10725) with  --  AT1G02330  --  has similar expression pattern (mutual information value=0.876061) with  --  AT1G17130
15 AT5G06420  --  has similar expression pattern (mutual information value=1.10725) with  --  AT1G02330  --  has similar expression pattern (mutual information value=0.825019) with  --  AT1G11240
16 AT5G06420  --  has similar expression pattern (mutual information value=1.10725) with  --  AT1G02330  --  has similar expression pattern (mutual information value=0.960685) with  --  DRT111
17 AT5G06420  --  has similar expression pattern (mutual information value=1.10725) with  --  AT1G02330  --  has similar expression pattern (mutual information value=1.02537) with  --  AT1G74250
18 AT5G06420  --  has similar expression pattern (mutual information value=1.10725) with  --  AT1G02330  --  has similar expression pattern (mutual information value=0.963083) with  --  CHR11
19 AT5G06420  --  has similar expression pattern (mutual information value=1.10725) with  --  AT1G02330  --  has similar expression pattern (mutual information value=0.980592) with  --  EIF4B1
20 AT5G06420  --  has similar expression pattern (mutual information value=1.10725) with  --  AT1G02330  --  has similar expression pattern (mutual information value=0.813484) with  --  AT1G29850
21 AT5G06420  --  has similar expression pattern (mutual information value=1.10725) with  --  AT1G02330  --  has similar expression pattern (mutual information value=0.909596) with  --  AT4G12760
22 AT5G06420  --  has similar expression pattern (mutual information value=1.10725) with  --  AT1G02330  --  has similar expression pattern (mutual information value=0.975092) with  --  AT4G18260
23 AT5G06420  --  has similar expression pattern (mutual information value=1.10725) with  --  AT1G02330  --  has similar expression pattern (mutual information value=0.983571) with  --  AT4G39160
24 AT5G06420  --  has similar expression pattern (mutual information value=1.10725) with  --  AT1G02330  --  has similar expression pattern (mutual information value=1.10725) with  --  AT1G01350
25 AT5G06420  --  has similar expression pattern (mutual information value=1.10725) with  --  AT1G02330  --  has similar expression pattern (mutual information value=0.916212) with  --  AT5G14440
26 AT5G06420  --  has similar expression pattern (mutual information value=1.10725) with  --  AT1G02330  --  has similar expression pattern (mutual information value=0.979294) with  --  AT5G49000
27 AT5G06420  --  has similar expression pattern (mutual information value=1.10725) with  --  AT1G02330  --  has similar expression pattern (mutual information value=0.902259) with  --  NRPB6A; NRPD6A; NRPE6A
28 AT5G06420  --  has similar expression pattern (mutual information value=1.10725) with  --  AT1G02330  --  has similar expression pattern (mutual information value=1.07791) with  --  AT5G53800
29 AT5G06420  --  has similar expression pattern (mutual information value=1.10725) with  --  AT1G02330  --  has similar expression pattern (mutual information value=0.83758) with  --  CPL4
30 AT5G06420  --  has similar expression pattern (mutual information value=1.10725) with  --  AT1G02330  --  has similar expression pattern (mutual information value=1.01236) with  --  HOS15
31 AT5G06420  --  has similar expression pattern (mutual information value=1.10725) with  --  AT1G02330  --  has similar expression pattern (mutual information value=0.816337) with  --  AT4G17010
32 AT5G06420  --  has similar expression pattern (mutual information value=0.837997) with  --  AT5G13970  --  has similar expression pattern (mutual information value=0.841972) with  --  AT2G40780
33 AT5G06420  --  has similar expression pattern (mutual information value=0.837997) with  --  AT5G13970  --  has similar expression pattern (mutual information value=0.895903) with  --  AT1G77170
34 AT5G06420  --  has similar expression pattern (mutual information value=0.837997) with  --  AT5G13970  --  has similar expression pattern (mutual information value=0.895903) with  --  AT1G77150
35 AT5G06420  --  has similar expression pattern (mutual information value=0.837997) with  --  AT5G13970  --  has similar expression pattern (mutual information value=0.884518) with  --  VHA-A
36 AT5G06420  --  has similar expression pattern (mutual information value=0.837997) with  --  AT5G13970  --  has similar expression pattern (mutual information value=0.870458) with  --  AT1G12830
37 AT5G06420  --  has similar expression pattern (mutual information value=0.837997) with  --  AT5G13970  --  has similar expression pattern (mutual information value=0.877634) with  --  AT3G18380
38 AT5G06420  --  has similar expression pattern (mutual information value=0.837997) with  --  AT5G13970  --  has similar expression pattern (mutual information value=0.948661) with  --  AT3G13410
39 AT5G06420  --  has similar expression pattern (mutual information value=0.837997) with  --  AT5G13970  --  has similar expression pattern (mutual information value=0.907072) with  --  ATSYP42; ATTLG2B; SYP42; TLG2B
40 AT5G06420  --  has similar expression pattern (mutual information value=0.837997) with  --  AT5G13970  --  has similar expression pattern (mutual information value=0.885704) with  --  AT4G08580
41 AT5G06420  --  has similar expression pattern (mutual information value=0.837997) with  --  AT5G13970  --  has similar expression pattern (mutual information value=0.885704) with  --  AT5G17900
42 AT5G06420  --  has similar expression pattern (mutual information value=0.837997) with  --  AT5G13970  --  has similar expression pattern (mutual information value=0.909018) with  --  AT3G61800
43 AT5G06420  --  has similar expression pattern (mutual information value=0.837997) with  --  AT5G13970  --  has similar expression pattern (mutual information value=0.846972) with  --  AT3G62220
44 AT5G06420  --  has similar expression pattern (mutual information value=0.837997) with  --  AT5G13970  --  has similar expression pattern (mutual information value=0.85909) with  --  AT5G08535
45 AT5G06420  --  has similar expression pattern (mutual information value=0.837997) with  --  AT5G13970  --  has similar expression pattern (mutual information value=0.822769) with  --  AT5G14710
46 AT5G06420  --  has similar expression pattern (mutual information value=0.837997) with  --  AT5G13970  --  has similar expression pattern (mutual information value=0.830365) with  --  AT5G44150
47 AT5G06420  --  has similar expression pattern (mutual information value=0.837997) with  --  AT5G13970  --  has similar expression pattern (mutual information value=0.826891) with  --  AT5G47090
48 AT5G06420  --  has similar expression pattern (mutual information value=0.837997) with  --  AT5G13970  --  has similar expression pattern (mutual information value=0.812676) with  --  AT5G65490
49 AT5G06420  --  has similar expression pattern (mutual information value=0.837997) with  --  AT5G13970  --  has similar expression pattern (mutual information value=0.888539) with  --  AT5G25520
50 AT5G06420  --  has similar expression pattern (mutual information value=0.837997) with  --  AT5G13970  --  has similar expression pattern (mutual information value=0.836243) with  --  AT5G27460
51 AT5G06420  --  has similar expression pattern (mutual information value=0.837997) with  --  AT5G13970  --  has similar expression pattern (mutual information value=0.819042) with  --  AT5G30490
52 AT5G06420  --  has similar expression pattern (mutual information value=0.837997) with  --  AT5G13970  --  has similar expression pattern (mutual information value=0.872116) with  --  AT5G09390
53 AT5G06420  --  has similar expression pattern (mutual information value=0.837997) with  --  AT5G13970  --  has similar expression pattern (mutual information value=0.978651) with  --  FAR1
54 AT5G06420  --  has similar expression pattern (mutual information value=0.999669) with  --  AT5G51130  --  has similar expression pattern (mutual information value=0.913337) with  --  ATRPA1A; ATRPA70A; RPA1A; RPA70A
55 AT5G06420  --  has similar expression pattern (mutual information value=0.999669) with  --  AT5G51130  --  has similar expression pattern (mutual information value=0.981291) with  --  AT1G26660
56 AT5G06420  --  has similar expression pattern (mutual information value=0.999669) with  --  AT5G51130  --  has similar expression pattern (mutual information value=0.801133) with  --  AT1G07590
57 AT5G06420  --  has similar expression pattern (mutual information value=0.999669) with  --  AT5G51130  --  has similar expression pattern (mutual information value=0.870703) with  --  ftsh10
58 AT5G06420  --  has similar expression pattern (mutual information value=0.999669) with  --  AT5G51130  --  has similar expression pattern (mutual information value=0.828707) with  --  AtMYB4R1; MYB4R1
59 AT5G06420  --  has similar expression pattern (mutual information value=0.999669) with  --  AT5G51130  --  has similar expression pattern (mutual information value=0.90263) with  --  AT4G22350
60 AT5G06420  --  has similar expression pattern (mutual information value=0.999669) with  --  AT5G51130  --  has similar expression pattern (mutual information value=0.90263) with  --  AT4G22285
61 AT5G06420  --  has similar expression pattern (mutual information value=0.999669) with  --  AT5G51130  --  has similar expression pattern (mutual information value=0.868703) with  --  AT4G27660
62 AT5G06420  --  has similar expression pattern (mutual information value=0.999669) with  --  AT5G51130  --  has similar expression pattern (mutual information value=0.822501) with  --  AT3G50910
63 AT5G06420  --  has similar expression pattern (mutual information value=0.999669) with  --  AT5G51130  --  has similar expression pattern (mutual information value=0.830712) with  --  AT5G06780
64 AT5G06420  --  has similar expression pattern (mutual information value=0.999669) with  --  AT5G51130  --  has similar expression pattern (mutual information value=0.872468) with  --  AT5G62620
65 AT5G06420  --  has similar expression pattern (mutual information value=0.999669) with  --  AT5G51130  --  has similar expression pattern (mutual information value=0.875556) with  --  KIWI
   Funding by the National Science Foundation    Funding by the Oklahoma Center for the Advancement of Science & Technology    Additional funding by the Samuel Roberts Noble Foundation

Copyright © The Zhao Lab

Disclaimer | Contact