Screen Resolution:     
Welcome to HRGRN
A Graph Search-Empowered Integrative Database of Arabidopsis Signaling Transduction, Metabolism and Gene Regulation Networks   
Location:  Home > Details for node AT4G29650
Type: Protein GRN ID: np34780 Name:
Annotation: Cytidine/deoxycytidylate deaminase family protein
Gene Locus: AT4G29650
Gene Expression (Affy ATH1 probeset): 253683_at    
Graph Customization
   
Choose color for highlight:  
Display edge: validated and predicted
Display node/edge prompt:
Layout:
 as format     
Data Filter
 Protein modification
 Protein-protein interaction
        also include predicted relationship
 Compound-protein interaction
 TF-target gene regulation
 Small RNA-target regulation
        also include predicted relationship
 Carrier and transported molecule
 Catalytic chemical reaction
 Co-expressed gene pair
        with mutual information value >

  Ignore nodes having > relationships
 
Relationship type:  protein modification     catalytic chemical reaction     protein-protein interaction    
compound-protein interaction     TF-target gene regulation     small RNA-target regulation    
co-expressed gene pair     carrier and transported molecule     family/complex and member
Relationship evidence:  Solid line: validated          Dashed line: predicted
Relationship direction: Arrow: positive          T shape: negative          None arrow: unknown or n/a
Hormone association: Thicker line: hormone related relationship         : hormone related Node
Node type:  Transcription factor or transcriptional regulator       Compound       Kinase
 Small regulatory RNA (miRNA & ta-siRNA)       Other nodes
No. Path
2 AT4G29650  --  has similar expression pattern (mutual information value=0.810318) with  --  AT5G62800
3 AT4G29650  --  has similar expression pattern (mutual information value=0.810318) with  --  AT5G62800  --  has similar expression pattern (mutual information value=0.809091) with  --  AT2G29780
4 AT4G29650  --  has similar expression pattern (mutual information value=0.810318) with  --  AT5G62800  --  has similar expression pattern (mutual information value=0.851882) with  --  anac025; NAC025
5 AT4G29650  --  has similar expression pattern (mutual information value=0.810318) with  --  AT5G62800  --  has similar expression pattern (mutual information value=0.805804) with  --  AT1G09380
6 AT4G29650  --  has similar expression pattern (mutual information value=0.810318) with  --  AT5G62800  --  has similar expression pattern (mutual information value=0.88341) with  --  PAB3
7 AT4G29650  --  has similar expression pattern (mutual information value=0.810318) with  --  AT5G62800  --  has similar expression pattern (mutual information value=0.894367) with  --  AT2G36920
8 AT4G29650  --  has similar expression pattern (mutual information value=0.810318) with  --  AT5G62800  --  has similar expression pattern (mutual information value=0.904823) with  --  BGLU4
9 AT4G29650  --  has similar expression pattern (mutual information value=0.810318) with  --  AT5G62800  --  has similar expression pattern (mutual information value=0.870183) with  --  AT1G31100
10 AT4G29650  --  has similar expression pattern (mutual information value=0.810318) with  --  AT5G62800  --  has similar expression pattern (mutual information value=0.804579) with  --  AT1G14490
11 AT4G29650  --  has similar expression pattern (mutual information value=0.810318) with  --  AT5G62800  --  has similar expression pattern (mutual information value=0.846096) with  --  AT1G47980
12 AT4G29650  --  has similar expression pattern (mutual information value=0.810318) with  --  AT5G62800  --  has similar expression pattern (mutual information value=0.957849) with  --  AT1G27990
13 AT4G29650  --  has similar expression pattern (mutual information value=0.810318) with  --  AT5G62800  --  has similar expression pattern (mutual information value=0.863767) with  --  AT3G25160
14 AT4G29650  --  has similar expression pattern (mutual information value=0.810318) with  --  AT5G62800  --  has similar expression pattern (mutual information value=0.850903) with  --  AT3G22350
15 AT4G29650  --  has similar expression pattern (mutual information value=0.810318) with  --  AT5G62800  --  has similar expression pattern (mutual information value=0.827608) with  --  ACHT3
16 AT4G29650  --  has similar expression pattern (mutual information value=0.810318) with  --  AT5G62800  --  has similar expression pattern (mutual information value=0.84429) with  --  AT4G02690
17 AT4G29650  --  has similar expression pattern (mutual information value=0.810318) with  --  AT5G62800  --  has similar expression pattern (mutual information value=0.827746) with  --  AT4G12150
18 AT4G29650  --  has similar expression pattern (mutual information value=0.810318) with  --  AT5G62800  --  has similar expression pattern (mutual information value=0.827746) with  --  AT4G12140
19 AT4G29650  --  has similar expression pattern (mutual information value=0.810318) with  --  AT5G62800  --  has similar expression pattern (mutual information value=0.864694) with  --  AT4G18920
20 AT4G29650  --  has similar expression pattern (mutual information value=0.810318) with  --  AT5G62800  --  has similar expression pattern (mutual information value=0.975879) with  --  AT4G19240
21 AT4G29650  --  has similar expression pattern (mutual information value=0.810318) with  --  AT5G62800  --  has similar expression pattern (mutual information value=0.914814) with  --  AT3G44070
22 AT4G29650  --  has similar expression pattern (mutual information value=0.810318) with  --  AT5G62800  --  has similar expression pattern (mutual information value=0.864439) with  --  AT5G24130
23 AT4G29650  --  has similar expression pattern (mutual information value=0.810318) with  --  AT5G62800  --  has similar expression pattern (mutual information value=0.941395) with  --  AtPP2-B12; PP2-B12
24 AT4G29650  --  has similar expression pattern (mutual information value=0.810318) with  --  AT5G62800  --  has similar expression pattern (mutual information value=0.805583) with  --  AT5G45690
25 AT4G29650  --  has similar expression pattern (mutual information value=0.810318) with  --  AT5G62800  --  has similar expression pattern (mutual information value=0.875457) with  --  ATNHX3; NHX3
   Funding by the National Science Foundation    Funding by the Oklahoma Center for the Advancement of Science & Technology    Additional funding by the Samuel Roberts Noble Foundation

Copyright © The Zhao Lab

Disclaimer | Contact