Screen Resolution:     
Welcome to HRGRN
A Graph Search-Empowered Integrative Database of Arabidopsis Signaling Transduction, Metabolism and Gene Regulation Networks   
Location:  Home > Details for node RDR2; SMD1
Type: Protein GRN ID: np34696 Name: RDR2; SMD1
Annotation: RDR2, SMD1 | RNA-dependent RNA polymerase 2 [EC:2.7.7.48]
Gene Locus: AT4G11130
Gene Expression (Affy ATH1 probeset): 254933_at    
Graph Customization
   
Choose color for highlight:  
Display edge: validated and predicted
Display node/edge prompt:
Layout:
 as format     
Data Filter
 Protein modification
 Protein-protein interaction
        also include predicted relationship
 Compound-protein interaction
 TF-target gene regulation
 Small RNA-target regulation
        also include predicted relationship
 Carrier and transported molecule
 Catalytic chemical reaction
 Co-expressed gene pair
        with mutual information value >

  Ignore nodes having > relationships
 
Relationship type:  protein modification     catalytic chemical reaction     protein-protein interaction    
compound-protein interaction     TF-target gene regulation     small RNA-target regulation    
co-expressed gene pair     carrier and transported molecule     family/complex and member
Relationship evidence:  Solid line: validated          Dashed line: predicted
Relationship direction: Arrow: positive          T shape: negative          None arrow: unknown or n/a
Hormone association: Thicker line: hormone related relationship         : hormone related Node
Node type:  Transcription factor or transcriptional regulator       Compound       Kinase
 Small regulatory RNA (miRNA & ta-siRNA)       Other nodes
No. Path
2 RDR2; SMD1  --  has product (in catalytic reaction)  --  RNA
3 RDR2; SMD1  --  interacts with  --  AT1G15215
4 RDR2; SMD1  --  interacts with  --  CHR38; CLSY; CLSY1
5 RDR2; SMD1  --  has similar expression pattern (mutual information value=0.811583) with  --  KIPK
6 RDR2; SMD1  --  has product (in catalytic reaction)  --  RNA  --  has product (in catalytic reaction)  --  NDP
7 RDR2; SMD1  --  has product (in catalytic reaction)  --  RNA  --  is product (in catalytic reaction) of  --  Nucleoside triphosphate
8 RDR2; SMD1  --  has product (in catalytic reaction)  --  RNA  --  is product (in catalytic reaction) of  --  AT2G19930
9 RDR2; SMD1  --  has product (in catalytic reaction)  --  RNA  --  is product (in catalytic reaction) of  --  AT2G19920
10 RDR2; SMD1  --  has product (in catalytic reaction)  --  RNA  --  is product (in catalytic reaction) of  --  ATRDRP1; RDR1
11 RDR2; SMD1  --  has product (in catalytic reaction)  --  RNA  --  is product (in catalytic reaction) of  --  nPAP; PAP(IV)
12 RDR2; SMD1  --  has product (in catalytic reaction)  --  RNA  --  is product (in catalytic reaction) of  --  PAPS3
13 RDR2; SMD1  --  has product (in catalytic reaction)  --  RNA  --  is product (in catalytic reaction) of  --  PAPS2
14 RDR2; SMD1  --  has product (in catalytic reaction)  --  RNA  --  is product (in catalytic reaction) of  --  PAPS1
15 RDR2; SMD1  --  has product (in catalytic reaction)  --  RNA  --  is product (in catalytic reaction) of  --  AT5G14580
16 RDR2; SMD1  --  has product (in catalytic reaction)  --  RNA  --  is product (in catalytic reaction) of  --  PDE326; PNP; RIF10
17 RDR2; SMD1  --  has product (in catalytic reaction)  --  RNA  --  is product (in catalytic reaction) of  --  NRPC1
18 RDR2; SMD1  --  has product (in catalytic reaction)  --  RNA  --  is product (in catalytic reaction) of  --  NRPC2
19 RDR2; SMD1  --  has product (in catalytic reaction)  --  RNA  --  is product (in catalytic reaction) of  --  AT5G15700
20 RDR2; SMD1  --  has product (in catalytic reaction)  --  RNA  --  is product (in catalytic reaction) of  --  NRPA1
21 RDR2; SMD1  --  has product (in catalytic reaction)  --  RNA  --  is product (in catalytic reaction) of  --  DMS2; DRD2; NRPD2; NRPD2A; NRPE2
22 RDR2; SMD1  --  has product (in catalytic reaction)  --  RNA  --  is product (in catalytic reaction) of  --  NRPD2B
23 RDR2; SMD1  --  has product (in catalytic reaction)  --  RNA  --  is product (in catalytic reaction) of  --  ATNRPD1B; DMS5; DRD3; NRPD1B; NRPE1
24 RDR2; SMD1  --  has product (in catalytic reaction)  --  RNA  --  is product (in catalytic reaction) of  --  PDE319; SCA3
25 RDR2; SMD1  --  has product (in catalytic reaction)  --  RNA  --  is product (in catalytic reaction) of  --  MGP3
26 RDR2; SMD1  --  has product (in catalytic reaction)  --  RNA  --  is product (in catalytic reaction) of  --  NRPD1; NRPD1A; POL IVA; SDE4; SMD2
27 RDR2; SMD1  --  has product (in catalytic reaction)  --  RNA  --  is product (in catalytic reaction) of  --  NRPA2
28 RDR2; SMD1  --  interacts with  --  CHR38; CLSY; CLSY1  --  is the target gene of  --  ath-miR414
29 RDR2; SMD1  --  has similar expression pattern (mutual information value=0.811583) with  --  KIPK  --  interacts with  --  AT4G33920
30 RDR2; SMD1  --  has similar expression pattern (mutual information value=0.811583) with  --  KIPK  --  interacts with  --  AtPERK13; PERK13; RHS10
31 RDR2; SMD1  --  has similar expression pattern (mutual information value=0.811583) with  --  KIPK  --  interacts with  --  AtPERK10; PERK10
32 RDR2; SMD1  --  has similar expression pattern (mutual information value=0.811583) with  --  KIPK  --  interacts with  --  AtPERK9; PERK9
33 RDR2; SMD1  --  has similar expression pattern (mutual information value=0.811583) with  --  KIPK  --  interacts with  --  AtPERK8; PERK8
34 RDR2; SMD1  --  has similar expression pattern (mutual information value=0.811583) with  --  KIPK  --  interacts with  --  KCBP; PKCBP; ZWI
35 RDR2; SMD1  --  has similar expression pattern (mutual information value=0.811583) with  --  KIPK  --  has similar expression pattern (mutual information value=0.813231) with  --  AT3G22520
   Funding by the National Science Foundation    Funding by the Oklahoma Center for the Advancement of Science & Technology    Additional funding by the Samuel Roberts Noble Foundation

Copyright © The Zhao Lab

Disclaimer | Contact