Screen Resolution:     
Welcome to HRGRN
A Graph Search-Empowered Integrative Database of Arabidopsis Signaling Transduction, Metabolism and Gene Regulation Networks   
Location:  Home > Details for node LD
Type: Protein GRN ID: np32756 Name: LD
Annotation: LD | Homeodomain-like superfamily protein
Gene Locus: AT4G02560
Transcription factor /
transcriptional regulator:		 transcription factor family Homobox-WOX
Gene Expression (Affy ATH1 probeset): 255444_at    
Graph Customization
   
Choose color for highlight:  
Display edge: validated and predicted
Display node/edge prompt:
Layout:
 as format     
Data Filter
 Protein modification
 Protein-protein interaction
        also include predicted relationship
 Compound-protein interaction
 TF-target gene regulation
 Small RNA-target regulation
        also include predicted relationship
 Carrier and transported molecule
 Catalytic chemical reaction
 Co-expressed gene pair
        with mutual information value >

  Ignore nodes having > relationships
 
Relationship type:  protein modification     catalytic chemical reaction     protein-protein interaction    
compound-protein interaction     TF-target gene regulation     small RNA-target regulation    
co-expressed gene pair     carrier and transported molecule     family/complex and member
Relationship evidence:  Solid line: validated          Dashed line: predicted
Relationship direction: Arrow: positive          T shape: negative          None arrow: unknown or n/a
Hormone association: Thicker line: hormone related relationship         : hormone related Node
Node type:  Transcription factor or transcriptional regulator       Compound       Kinase
 Small regulatory RNA (miRNA & ta-siRNA)       Other nodes
No. Path
2 LD  --  interacts with  --  SUF4
3 LD  --  has similar expression pattern (mutual information value=0.82528) with  --  CHR5
4 LD  --  interacts with  --  SUF4  --  interacts with  --  MOS1
5 LD  --  interacts with  --  SUF4  --  interacts with  --  AT5G49880
6 LD  --  interacts with  --  SUF4  --  interacts with  --  FRL1
7 LD  --  interacts with  --  SUF4  --  interacts with  --  FLA; FRI
8 LD  --  interacts with  --  SUF4  --  interacts with  --  AT2G22370
9 LD  --  interacts with  --  SUF4  --  interacts with  --  BUB3.1
10 LD  --  interacts with  --  SUF4  --  interacts with  --  TAF14
11 LD  --  interacts with  --  SUF4  --  interacts with  --  ATSWC6; SEF
12 LD  --  interacts with  --  SUF4  --  interacts with  --  ATTIP49A; RIN1
13 LD  --  interacts with  --  SUF4  --  is the target gene of  --  ath-miR418
14 LD  --  has similar expression pattern (mutual information value=0.82528) with  --  CHR5  --  has similar expression pattern (mutual information value=0.905033) with  --  SE
15 LD  --  has similar expression pattern (mutual information value=0.82528) with  --  CHR5  --  has similar expression pattern (mutual information value=1.14492) with  --  AT1G60200
16 LD  --  has similar expression pattern (mutual information value=0.82528) with  --  CHR5  --  has similar expression pattern (mutual information value=0.95915) with  --  AT1G15940
17 LD  --  has similar expression pattern (mutual information value=0.82528) with  --  CHR5  --  has similar expression pattern (mutual information value=0.915821) with  --  ATPC2
18 LD  --  has similar expression pattern (mutual information value=0.82528) with  --  CHR5  --  has similar expression pattern (mutual information value=0.825156) with  --  AT4G10930
19 LD  --  has similar expression pattern (mutual information value=0.82528) with  --  CHR5  --  has similar expression pattern (mutual information value=0.945569) with  --  AT5G28330
20 LD  --  has similar expression pattern (mutual information value=0.82528) with  --  CHR5  --  has similar expression pattern (mutual information value=0.945569) with  --  AT5G28390
21 LD  --  has similar expression pattern (mutual information value=0.82528) with  --  CHR5  --  has similar expression pattern (mutual information value=0.945569) with  --  AT3G52660
22 LD  --  has similar expression pattern (mutual information value=0.82528) with  --  CHR5  --  has similar expression pattern (mutual information value=0.937875) with  --  SUA
23 LD  --  has similar expression pattern (mutual information value=0.82528) with  --  CHR5  --  has similar expression pattern (mutual information value=0.823098) with  --  AT5G09880
24 LD  --  has similar expression pattern (mutual information value=0.82528) with  --  CHR5  --  has similar expression pattern (mutual information value=0.995721) with  --  TGH
25 LD  --  has similar expression pattern (mutual information value=0.82528) with  --  CHR5  --  has similar expression pattern (mutual information value=0.912339) with  --  ATXR7; SDG25
26 LD  --  has similar expression pattern (mutual information value=0.82528) with  --  CHR5  --  has similar expression pattern (mutual information value=0.82536) with  --  AT5G44180
27 LD  --  has similar expression pattern (mutual information value=0.82528) with  --  CHR5  --  has similar expression pattern (mutual information value=0.927461) with  --  At-RS41; ATRSP41; RS41
28 LD  --  has similar expression pattern (mutual information value=0.82528) with  --  CHR5  --  has similar expression pattern (mutual information value=0.834796) with  --  ATRAD21.3; SYN4
29 LD  --  has similar expression pattern (mutual information value=0.82528) with  --  CHR5  --  has similar expression pattern (mutual information value=0.989392) with  --  DOT2; MDF
30 LD  --  has similar expression pattern (mutual information value=0.82528) with  --  CHR5  --  has similar expression pattern (mutual information value=0.989724) with  --  AT5G17440
31 LD  --  has similar expression pattern (mutual information value=0.82528) with  --  CHR5  --  is the target gene of  --  ath-miR5998b
32 LD  --  has similar expression pattern (mutual information value=0.82528) with  --  CHR5  --  is the target gene of  --  ath-miR5998a
   Funding by the National Science Foundation    Funding by the Oklahoma Center for the Advancement of Science & Technology    Additional funding by the Samuel Roberts Noble Foundation

Copyright © The Zhao Lab

Disclaimer | Contact