Screen Resolution:     
Welcome to HRGRN
A Graph Search-Empowered Integrative Database of Arabidopsis Signaling Transduction, Metabolism and Gene Regulation Networks   
Location:  Home > Details for node AT4G28740
Type: Protein GRN ID: np32528 Name:
Annotation: FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3493 (InterPro:IPR021883); BEST Arabidopsis thaliana protein match is: tetratricopeptide repeat (TPR)-containing protein (TAIR:AT1G02910.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Gene Locus: AT4G28740
Gene Expression (Affy ATH1 probeset): 253765_at    
Graph Customization
   
Choose color for highlight:  
Display edge: validated and predicted
Display node/edge prompt:
Layout:
 as format     
Data Filter
 Protein modification
 Protein-protein interaction
        also include predicted relationship
 Compound-protein interaction
 TF-target gene regulation
 Small RNA-target regulation
        also include predicted relationship
 Carrier and transported molecule
 Catalytic chemical reaction
 Co-expressed gene pair
        with mutual information value >

  Ignore nodes having > relationships
 
Relationship type:  protein modification     catalytic chemical reaction     protein-protein interaction    
compound-protein interaction     TF-target gene regulation     small RNA-target regulation    
co-expressed gene pair     carrier and transported molecule     family/complex and member
Relationship evidence:  Solid line: validated          Dashed line: predicted
Relationship direction: Arrow: positive          T shape: negative          None arrow: unknown or n/a
Hormone association: Thicker line: hormone related relationship         : hormone related Node
Node type:  Transcription factor or transcriptional regulator       Compound       Kinase
 Small regulatory RNA (miRNA & ta-siRNA)       Other nodes
No. Path
2 AT4G28740  --  has similar expression pattern (mutual information value=0.873115) with  --  AT1G06690
3 AT4G28740  --  has similar expression pattern (mutual information value=0.931769) with  --  AT1G71810
4 AT4G28740  --  has similar expression pattern (mutual information value=0.915633) with  --  AT1G14270
5 AT4G28740  --  has similar expression pattern (mutual information value=0.891637) with  --  AT3G17930
6 AT4G28740  --  has similar expression pattern (mutual information value=1.02588) with  --  AT4G29590
7 AT4G28740  --  has similar expression pattern (mutual information value=0.838717) with  --  DEG8; DEGP8
8 AT4G28740  --  has similar expression pattern (mutual information value=1.04603) with  --  AT4G36530
9 AT4G28740  --  has similar expression pattern (mutual information value=0.873115) with  --  AT1G06690  --  has similar expression pattern (mutual information value=1.00112) with  --  AT2G32640
10 AT4G28740  --  has similar expression pattern (mutual information value=0.873115) with  --  AT1G06690  --  has similar expression pattern (mutual information value=1.17281) with  --  AT1G77090
11 AT4G28740  --  has similar expression pattern (mutual information value=0.873115) with  --  AT1G06690  --  has similar expression pattern (mutual information value=1.0282) with  --  XK-1; XK1
12 AT4G28740  --  has similar expression pattern (mutual information value=0.873115) with  --  AT1G06690  --  has similar expression pattern (mutual information value=1.03997) with  --  AT1G79510
13 AT4G28740  --  has similar expression pattern (mutual information value=0.873115) with  --  AT1G06690  --  has similar expression pattern (mutual information value=1.10288) with  --  AT1G64150
14 AT4G28740  --  has similar expression pattern (mutual information value=0.873115) with  --  AT1G06690  --  has similar expression pattern (mutual information value=1.12044) with  --  AT1G64680
15 AT4G28740  --  has similar expression pattern (mutual information value=0.873115) with  --  AT1G06690  --  has similar expression pattern (mutual information value=1.09616) with  --  AT1G29700
16 AT4G28740  --  has similar expression pattern (mutual information value=0.873115) with  --  AT1G06690  --  has similar expression pattern (mutual information value=0.878399) with  --  AT3G18500
17 AT4G28740  --  has similar expression pattern (mutual information value=0.873115) with  --  AT1G06690  --  has similar expression pattern (mutual information value=1.2047) with  --  AT4G12830
18 AT4G28740  --  has similar expression pattern (mutual information value=0.873115) with  --  AT1G06690  --  has similar expression pattern (mutual information value=1.07977) with  --  AT3G56650
19 AT4G28740  --  has similar expression pattern (mutual information value=0.873115) with  --  AT1G06690  --  has similar expression pattern (mutual information value=1.10834) with  --  AT5G38520
20 AT4G28740  --  has similar expression pattern (mutual information value=0.873115) with  --  AT1G06690  --  has similar expression pattern (mutual information value=1.09339) with  --  CcdA
21 AT4G28740  --  has similar expression pattern (mutual information value=0.873115) with  --  AT1G06690  --  has similar expression pattern (mutual information value=1.15166) with  --  AT5G27560
22 AT4G28740  --  has similar expression pattern (mutual information value=0.873115) with  --  AT1G06690  --  has similar expression pattern (mutual information value=1.15932) with  --  LHCA5
23 AT4G28740  --  has similar expression pattern (mutual information value=0.873115) with  --  AT1G06690  --  has similar expression pattern (mutual information value=1.2235) with  --  PDE226; PDS; PDS3
24 AT4G28740  --  has similar expression pattern (mutual information value=0.931769) with  --  AT1G71810  --  has similar expression pattern (mutual information value=0.996933) with  --  AT1G49380
25 AT4G28740  --  has similar expression pattern (mutual information value=0.931769) with  --  AT1G71810  --  has similar expression pattern (mutual information value=1.09475) with  --  AT5G08650
26 AT4G28740  --  has similar expression pattern (mutual information value=0.931769) with  --  AT1G71810  --  has similar expression pattern (mutual information value=0.83594) with  --  AT5G63060
27 AT4G28740  --  has similar expression pattern (mutual information value=0.931769) with  --  AT1G71810  --  has similar expression pattern (mutual information value=1.15148) with  --  AT5G62840
28 AT4G28740  --  has similar expression pattern (mutual information value=0.931769) with  --  AT1G71810  --  has similar expression pattern (mutual information value=1.13406) with  --  AT1G32220
29 AT4G28740  --  has similar expression pattern (mutual information value=0.915633) with  --  AT1G14270  --  has similar expression pattern (mutual information value=1.12657) with  --  AT2G24060
30 AT4G28740  --  has similar expression pattern (mutual information value=0.915633) with  --  AT1G14270  --  has similar expression pattern (mutual information value=1.3291) with  --  ATSULA; GC1; SULA
31 AT4G28740  --  has similar expression pattern (mutual information value=0.915633) with  --  AT1G14270  --  has similar expression pattern (mutual information value=1.11926) with  --  AT1G14030
32 AT4G28740  --  has similar expression pattern (mutual information value=0.915633) with  --  AT1G14270  --  has similar expression pattern (mutual information value=1.1293) with  --  FUG1
33 AT4G28740  --  has similar expression pattern (mutual information value=0.915633) with  --  AT1G14270  --  has similar expression pattern (mutual information value=1.01176) with  --  PDE318
34 AT4G28740  --  has similar expression pattern (mutual information value=0.915633) with  --  AT1G14270  --  has similar expression pattern (mutual information value=0.866541) with  --  AT1G50450
35 AT4G28740  --  has similar expression pattern (mutual information value=0.915633) with  --  AT1G14270  --  has similar expression pattern (mutual information value=1.00782) with  --  AT3G01060
36 AT4G28740  --  has similar expression pattern (mutual information value=0.915633) with  --  AT1G14270  --  has similar expression pattern (mutual information value=1.00161) with  --  AT3G04550
37 AT4G28740  --  has similar expression pattern (mutual information value=0.915633) with  --  AT1G14270  --  has similar expression pattern (mutual information value=1.22123) with  --  ATAB2
38 AT4G28740  --  has similar expression pattern (mutual information value=0.915633) with  --  AT1G14270  --  has similar expression pattern (mutual information value=1.01504) with  --  PLSP1
39 AT4G28740  --  has similar expression pattern (mutual information value=0.915633) with  --  AT1G14270  --  has similar expression pattern (mutual information value=1.02858) with  --  PGR7
40 AT4G28740  --  has similar expression pattern (mutual information value=0.915633) with  --  AT1G14270  --  has similar expression pattern (mutual information value=1.2214) with  --  AT3G25480
41 AT4G28740  --  has similar expression pattern (mutual information value=0.915633) with  --  AT1G14270  --  has similar expression pattern (mutual information value=1.19419) with  --  AT3G29185
42 AT4G28740  --  has similar expression pattern (mutual information value=0.915633) with  --  AT1G14270  --  has similar expression pattern (mutual information value=1.24749) with  --  AT3G25805
43 AT4G28740  --  has similar expression pattern (mutual information value=0.915633) with  --  AT1G14270  --  has similar expression pattern (mutual information value=1.26322) with  --  AT3G15110
44 AT4G28740  --  has similar expression pattern (mutual information value=0.915633) with  --  AT1G14270  --  has similar expression pattern (mutual information value=1.0161) with  --  AT3G22210
45 AT4G28740  --  has similar expression pattern (mutual information value=0.915633) with  --  AT1G14270  --  has similar expression pattern (mutual information value=1.05775) with  --  AT4G26370
46 AT4G28740  --  has similar expression pattern (mutual information value=0.915633) with  --  AT1G14270  --  has similar expression pattern (mutual information value=0.882641) with  --  ATH1
47 AT4G28740  --  has similar expression pattern (mutual information value=0.915633) with  --  AT1G14270  --  has similar expression pattern (mutual information value=1.04283) with  --  AT4G33500
48 AT4G28740  --  has similar expression pattern (mutual information value=0.915633) with  --  AT1G14270  --  has similar expression pattern (mutual information value=1.17902) with  --  AT3G60370
49 AT4G28740  --  has similar expression pattern (mutual information value=0.915633) with  --  AT1G14270  --  has similar expression pattern (mutual information value=1.30927) with  --  AT5G42765
50 AT4G28740  --  has similar expression pattern (mutual information value=0.915633) with  --  AT1G14270  --  has similar expression pattern (mutual information value=1.02237) with  --  APO2; emb1629
51 AT4G28740  --  has similar expression pattern (mutual information value=0.915633) with  --  AT1G14270  --  has similar expression pattern (mutual information value=0.801285) with  --  AT5G65685
52 AT4G28740  --  has similar expression pattern (mutual information value=0.915633) with  --  AT1G14270  --  has similar expression pattern (mutual information value=1.1957) with  --  RPL9
53 AT4G28740  --  has similar expression pattern (mutual information value=0.891637) with  --  AT3G17930  --  interacts with  --  AT1G31460
54 AT4G28740  --  has similar expression pattern (mutual information value=0.891637) with  --  AT3G17930  --  has similar expression pattern (mutual information value=0.947013) with  --  AT2G42130
55 AT4G28740  --  has similar expression pattern (mutual information value=0.891637) with  --  AT3G17930  --  has similar expression pattern (mutual information value=0.940583) with  --  AT1G76730
56 AT4G28740  --  has similar expression pattern (mutual information value=0.891637) with  --  AT3G17930  --  has similar expression pattern (mutual information value=0.8832) with  --  AT3G02690
57 AT4G28740  --  has similar expression pattern (mutual information value=0.891637) with  --  AT3G17930  --  has similar expression pattern (mutual information value=0.927811) with  --  AT3G12685
58 AT4G28740  --  has similar expression pattern (mutual information value=0.891637) with  --  AT3G17930  --  has similar expression pattern (mutual information value=0.868012) with  --  AT4G10000
59 AT4G28740  --  has similar expression pattern (mutual information value=0.891637) with  --  AT3G17930  --  has similar expression pattern (mutual information value=0.85748) with  --  AT4G24090
60 AT4G28740  --  has similar expression pattern (mutual information value=0.891637) with  --  AT3G17930  --  has similar expression pattern (mutual information value=0.955242) with  --  ATNOA1; ATNOS1; NOA1; NOS1; RIF1
61 AT4G28740  --  has similar expression pattern (mutual information value=0.891637) with  --  AT3G17930  --  has similar expression pattern (mutual information value=1.13169) with  --  GSTL2
62 AT4G28740  --  has similar expression pattern (mutual information value=0.891637) with  --  AT3G17930  --  has similar expression pattern (mutual information value=0.850876) with  --  CP31B
63 AT4G28740  --  has similar expression pattern (mutual information value=0.891637) with  --  AT3G17930  --  has similar expression pattern (mutual information value=0.917545) with  --  LPA2
64 AT4G28740  --  has similar expression pattern (mutual information value=0.891637) with  --  AT3G17930  --  has similar expression pattern (mutual information value=0.859862) with  --  CRR21
65 AT4G28740  --  has similar expression pattern (mutual information value=0.891637) with  --  AT3G17930  --  has similar expression pattern (mutual information value=0.991156) with  --  ACD2; ATRCCR
66 AT4G28740  --  has similar expression pattern (mutual information value=0.891637) with  --  AT3G17930  --  has similar expression pattern (mutual information value=0.908457) with  --  AT4G17360
67 AT4G28740  --  has similar expression pattern (mutual information value=1.02588) with  --  AT4G29590  --  has similar expression pattern (mutual information value=1.05222) with  --  ATFC-II; FC-II; FC2
68 AT4G28740  --  has similar expression pattern (mutual information value=1.02588) with  --  AT4G29590  --  has similar expression pattern (mutual information value=0.982152) with  --  AT1G05140
69 AT4G28740  --  has similar expression pattern (mutual information value=1.02588) with  --  AT4G29590  --  has similar expression pattern (mutual information value=1.12359) with  --  ABCD2
70 AT4G28740  --  has similar expression pattern (mutual information value=1.02588) with  --  AT4G29590  --  has similar expression pattern (mutual information value=1.19601) with  --  AT5G38510
71 AT4G28740  --  has similar expression pattern (mutual information value=0.838717) with  --  DEG8; DEGP8  --  has similar expression pattern (mutual information value=0.849559) with  --  ATSS4; SS4; SSIV
72 AT4G28740  --  has similar expression pattern (mutual information value=0.838717) with  --  DEG8; DEGP8  --  has similar expression pattern (mutual information value=1.03598) with  --  AT3G43540
73 AT4G28740  --  has similar expression pattern (mutual information value=0.838717) with  --  DEG8; DEGP8  --  has similar expression pattern (mutual information value=1.01182) with  --  APG3
74 AT4G28740  --  has similar expression pattern (mutual information value=0.838717) with  --  DEG8; DEGP8  --  has similar expression pattern (mutual information value=1.01769) with  --  AT5G14460
75 AT4G28740  --  has similar expression pattern (mutual information value=0.838717) with  --  DEG8; DEGP8  --  has similar expression pattern (mutual information value=0.99785) with  --  ATDEF2; DEF2; PDF1B
76 AT4G28740  --  has similar expression pattern (mutual information value=0.838717) with  --  DEG8; DEGP8  --  has similar expression pattern (mutual information value=0.971794) with  --  ATSS1; SS1; SSI; SSI1
77 AT4G28740  --  has similar expression pattern (mutual information value=0.838717) with  --  DEG8; DEGP8  --  has similar expression pattern (mutual information value=1.2121) with  --  DXR; PDE129
78 AT4G28740  --  has similar expression pattern (mutual information value=0.838717) with  --  DEG8; DEGP8  --  has similar expression pattern (mutual information value=1.07433) with  --  ATLDA; ATPU1; LDA; PU1
79 AT4G28740  --  has similar expression pattern (mutual information value=1.04603) with  --  AT4G36530  --  interacts with  --  AT4G00355
80 AT4G28740  --  has similar expression pattern (mutual information value=1.04603) with  --  AT4G36530  --  has similar expression pattern (mutual information value=0.965161) with  --  AT2G30170
81 AT4G28740  --  has similar expression pattern (mutual information value=1.04603) with  --  AT4G36530  --  has similar expression pattern (mutual information value=0.983995) with  --  Carotenoid biosynthesis
82 AT4G28740  --  has similar expression pattern (mutual information value=1.04603) with  --  AT4G36530  --  has similar expression pattern (mutual information value=0.959517) with  --  AT2G36145
83 AT4G28740  --  has similar expression pattern (mutual information value=1.04603) with  --  AT4G36530  --  has similar expression pattern (mutual information value=0.974) with  --  AT2G05310
84 AT4G28740  --  has similar expression pattern (mutual information value=1.04603) with  --  AT4G36530  --  has similar expression pattern (mutual information value=0.974) with  --  AT4G13500
85 AT4G28740  --  has similar expression pattern (mutual information value=1.04603) with  --  AT4G36530  --  has similar expression pattern (mutual information value=1.02351) with  --  LPA1
86 AT4G28740  --  has similar expression pattern (mutual information value=1.04603) with  --  AT4G36530  --  has similar expression pattern (mutual information value=0.842093) with  --  AT4G13150
87 AT4G28740  --  has similar expression pattern (mutual information value=1.04603) with  --  AT4G36530  --  has similar expression pattern (mutual information value=1.03162) with  --  PGR5-LIKE A
88 AT4G28740  --  has similar expression pattern (mutual information value=1.04603) with  --  AT4G36530  --  has similar expression pattern (mutual information value=0.909402) with  --  AT4G27390
89 AT4G28740  --  has similar expression pattern (mutual information value=1.04603) with  --  AT4G36530  --  has similar expression pattern (mutual information value=1.07141) with  --  AT4G28025
90 AT4G28740  --  has similar expression pattern (mutual information value=1.04603) with  --  AT4G36530  --  has similar expression pattern (mutual information value=0.810726) with  --  DHS2
91 AT4G28740  --  has similar expression pattern (mutual information value=1.04603) with  --  AT4G36530  --  has similar expression pattern (mutual information value=0.980649) with  --  AT3G46630
92 AT4G28740  --  has similar expression pattern (mutual information value=1.04603) with  --  AT4G36530  --  has similar expression pattern (mutual information value=1.12813) with  --  AT3G61080
93 AT4G28740  --  has similar expression pattern (mutual information value=1.04603) with  --  AT4G36530  --  has similar expression pattern (mutual information value=0.82873) with  --  SQE5; SQP1
   Funding by the National Science Foundation    Funding by the Oklahoma Center for the Advancement of Science & Technology    Additional funding by the Samuel Roberts Noble Foundation

Copyright © The Zhao Lab

Disclaimer | Contact