Screen Resolution:     
Welcome to HRGRN
A Graph Search-Empowered Integrative Database of Arabidopsis Signaling Transduction, Metabolism and Gene Regulation Networks   
Location:  Home > Details for node AT1G49680
Type: Protein GRN ID: np10128 Name:
Annotation: unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G28870.1); Has 22889 Blast hits to 1261 proteins in 188 species: Archae - 2; Bacteria - 20934; Metazoa - 922; Fungi - 109; Plants - 147; Viruses - 121; Other Eukaryotes - 654 (source: NCBI BLink).
Gene Locus: AT1G49680
Gene Expression (Affy ATH1 probeset): 261600_x_at    
Graph Customization
   
Choose color for highlight:  
Display edge: validated and predicted
Display node/edge prompt:
Layout:
 as format     
Data Filter
 Protein modification
 Protein-protein interaction
        also include predicted relationship
 Compound-protein interaction
 TF-target gene regulation
 Small RNA-target regulation
        also include predicted relationship
 Carrier and transported molecule
 Catalytic chemical reaction
 Co-expressed gene pair
        with mutual information value >

  Ignore nodes having > relationships
 
Relationship type:  protein modification     catalytic chemical reaction     protein-protein interaction    
compound-protein interaction     TF-target gene regulation     small RNA-target regulation    
co-expressed gene pair     carrier and transported molecule     family/complex and member
Relationship evidence:  Solid line: validated          Dashed line: predicted
Relationship direction: Arrow: positive          T shape: negative          None arrow: unknown or n/a
Hormone association: Thicker line: hormone related relationship         : hormone related Node
Node type:  Transcription factor or transcriptional regulator       Compound       Kinase
 Small regulatory RNA (miRNA & ta-siRNA)       Other nodes
No. Path
2 AT1G49680  --  has similar expression pattern (mutual information value=0.884793) with  --  AT2G06490
3 AT1G49680  --  has similar expression pattern (mutual information value=0.884793) with  --  AT2G06490  --  has similar expression pattern (mutual information value=0.850128) with  --  AT2G10780
4 AT1G49680  --  has similar expression pattern (mutual information value=0.884793) with  --  AT2G06490  --  has similar expression pattern (mutual information value=0.836606) with  --  AT2G04970
5 AT1G49680  --  has similar expression pattern (mutual information value=0.884793) with  --  AT2G06490  --  has similar expression pattern (mutual information value=0.836606) with  --  AT1G32830
6 AT1G49680  --  has similar expression pattern (mutual information value=0.884793) with  --  AT2G06490  --  has similar expression pattern (mutual information value=0.836606) with  --  AT5G34895
7 AT1G49680  --  has similar expression pattern (mutual information value=0.884793) with  --  AT2G06490  --  has similar expression pattern (mutual information value=0.836606) with  --  AT3G30450
8 AT1G49680  --  has similar expression pattern (mutual information value=0.884793) with  --  AT2G06490  --  has similar expression pattern (mutual information value=0.836606) with  --  AT2G15200
9 AT1G49680  --  has similar expression pattern (mutual information value=0.884793) with  --  AT2G06490  --  has similar expression pattern (mutual information value=0.836606) with  --  AT2G02200
10 AT1G49680  --  has similar expression pattern (mutual information value=0.884793) with  --  AT2G06490  --  has similar expression pattern (mutual information value=0.836606) with  --  AT2G06440
11 AT1G49680  --  has similar expression pattern (mutual information value=0.884793) with  --  AT2G06490  --  has similar expression pattern (mutual information value=0.884793) with  --  AT4G28870
12 AT1G49680  --  has similar expression pattern (mutual information value=0.884793) with  --  AT2G06490  --  has similar expression pattern (mutual information value=0.850681) with  --  SDE3
13 AT1G49680  --  has similar expression pattern (mutual information value=0.884793) with  --  AT2G06490  --  has similar expression pattern (mutual information value=0.978434) with  --  AT3G43530
   Funding by the National Science Foundation    Funding by the Oklahoma Center for the Advancement of Science & Technology    Additional funding by the Samuel Roberts Noble Foundation

Copyright © The Zhao Lab

Disclaimer | Contact