Screen Resolution:     
Welcome to HRGRN
A Graph Search-Empowered Integrative Database of Arabidopsis Signaling Transduction, Metabolism and Gene Regulation Networks   
Location:  Home > Details for node CRF1
Type: Protein GRN ID: np04069 Name: CRF1
Annotation: CRF1 | cytokinin response factor 1
Gene Locus: AT4G11140
Transcription factor /
transcriptional regulator:		 transcription factor family AP2-EREBP
References:
  • Cutcliffe JW, Hellmann E, Heyl A, Rashotte AM. CRFs form protein-protein interactions with each other and with members of the cytokinin signalling pathway in Arabidopsis via the CRF domain. J Exp Bot. 2011 Oct;62(14):4995-5002. doi: 10.1093/jxb/err199. Epub 2011 Jun 24. PubMed PMID: 21705390; PubMed Central PMCID: PMC3193008.
 
Pathways: Cytokinins 
Gene Expression (Affy ATH1 probeset): 254934_at    
Graph Customization
   
Choose color for highlight:  
Display edge: validated and predicted
Display node/edge prompt:
Layout:
 as format     
Data Filter
 Protein modification
 Protein-protein interaction
        also include predicted relationship
 Compound-protein interaction
 TF-target gene regulation
 Small RNA-target regulation
        also include predicted relationship
 Carrier and transported molecule
 Catalytic chemical reaction
 Co-expressed gene pair
        with mutual information value >

  Ignore nodes having > relationships
 
Relationship type:  protein modification     catalytic chemical reaction     protein-protein interaction    
compound-protein interaction     TF-target gene regulation     small RNA-target regulation    
co-expressed gene pair     carrier and transported molecule     family/complex and member
Relationship evidence:  Solid line: validated          Dashed line: predicted
Relationship direction: Arrow: positive          T shape: negative          None arrow: unknown or n/a
Hormone association: Thicker line: hormone related relationship         : hormone related Node
Node type:  Transcription factor or transcriptional regulator       Compound       Kinase
 Small regulatory RNA (miRNA & ta-siRNA)       Other nodes
No. Path
2 CRF1  --  interacts with  --  HY5
3 CRF1  --  interacts with  --  ARR12
4 CRF1  --  interacts with  --  ARR7
5 CRF1  --  interacts with  --  AHP5
6 CRF1  --  interacts with  --  AHP4
7 CRF1  --  interacts with  --  AHP3
8 CRF1  --  interacts with  --  AHP2
9 CRF1  --  interacts with  --  AHP1
10 CRF1  --  interacts with  --  CRF7
11 CRF1  --  interacts with  --  CRF8
12 CRF1  --  interacts with  --  CRF6
13 CRF1  --  interacts with  --  CRF5
14 CRF1  --  interacts with  --  CRF4
15 CRF1  --  interacts with  --  CRF3
16 CRF1  --  interacts with  --  CRF2
17 CRF1  --  is a member of  --  CRF1 family74, transcription factor gene
18 CRF1  --  interacts with  --  HY5  --  regulates the expression of   --  ATGA2OX2
19 CRF1  --  interacts with  --  HY5  --  regulates the expression of   --  BBX22; DBB3; LZF1; STH3
20 CRF1  --  interacts with  --  HY5  --  regulates the expression of   --  ANS; LDOX; TDS4; TT18
21 CRF1  --  interacts with  --  HY5  --  regulates the expression of   --  DFR; M318; TT3
22 CRF1  --  interacts with  --  HY5  --  regulates the expression of   --  CYP75B1; D501; TT7
23 CRF1  --  interacts with  --  HY5  --  regulates the expression of   --  CHI
24 CRF1  --  interacts with  --  HY5  --  regulates the expression of   --  ATCHS; CHS; TT4
25 CRF1  --  interacts with  --  HY5  --  regulates the expression of   --  ATNRT1; B-1; CHL1; CHL1-1; NRT1; NRT1.1
26 CRF1  --  interacts with  --  HY5  --  regulates the expression of   --  ATNR2; B29; CHL3; NIA2; NIA2-1; NR; NR2
27 CRF1  --  interacts with  --  HY5  --  regulates the expression of   --  IAA14
28 CRF1  --  interacts with  --  HY5  --  regulates the expression of   --  AXR2
29 CRF1  --  interacts with  --  HY5  --  regulates the expression of   --  AtGA20ox1 family92, coding gene
30 CRF1  --  interacts with  --  HY5  --  regulates the expression of   --  ATERF11
31 CRF1  --  interacts with  --  HY5  --  regulates the expression of   --  FHL
32 CRF1  --  interacts with  --  HY5  --  regulates the expression of   --  F3'H; F3H; TT6
33 CRF1  --  interacts with  --  HY5  --  regulates the expression of   --  FHY1; FRY1; PAT3
34 CRF1  --  interacts with  --  HY5  --  regulates the expression of   --  ABI5
35 CRF1  --  interacts with  --  HY5  --  regulates the expression of   --  AB140; CAB1; CAB140; LHCB1.3
36 CRF1  --  interacts with  --  HY5  --  regulates the expression of   --  AB165; CAB2; LHCB1.1
37 CRF1  --  interacts with  --  HY5  --  is regulated by  --  SPA1
38 CRF1  --  interacts with  --  HY5  --  interacts with  --  AT3G56770
39 CRF1  --  interacts with  --  HY5  --  interacts with  --  ATBZIP54; GBF2
40 CRF1  --  interacts with  --  HY5  --  interacts with  --  AT5G21960
41 CRF1  --  interacts with  --  HY5  --  interacts with  --  STH
42 CRF1  --  interacts with  --  HY5  --  interacts with  --  PIF3
43 CRF1  --  interacts with  --  HY5  --  interacts with  --  pil5
44 CRF1  --  interacts with  --  HY5  --  interacts with  --  GBF1
45 CRF1  --  interacts with  --  HY5  --  interacts with  --  HYH
46 CRF1  --  interacts with  --  HY5  --  interacts with  --  AtBBX21; BBX21; LHUS; STH2
47 CRF1  --  interacts with  --  HY5  --  interacts with  --  FAR1
48 CRF1  --  interacts with  --  HY5  --  interacts with  --  FHY3
49 CRF1  --  interacts with  --  HY5  --  interacts with  --  COP1
50 CRF1  --  interacts with  --  HY5  --  interacts with  --  FIN219; JAR1
51 CRF1  --  interacts with  --  HY5  --  interacts with  --  ATPEX2; PEX2; TED3
52 CRF1  --  interacts with  --  HY5  --  interacts with  --  FBI1; HFR1; REP1; RSF1
53 CRF1  --  interacts with  --  HY5  --  interacts with  --  AT4G13040
54 CRF1  --  interacts with  --  HY5  --  interacts with  --  MYC3
55 CRF1  --  interacts with  --  HY5  --  interacts with  --  AtMYB18; MYB18
56 CRF1  --  interacts with  --  HY5  --  interacts with  --  AT5G48560
57 CRF1  --  interacts with  --  HY5  --  interacts with  --  AT3G23230
58 CRF1  --  interacts with  --  HY5  --  interacts with  --  PYE
59 CRF1  --  interacts with  --  HY5  --  interacts with  --  AT1G73870
60 CRF1  --  interacts with  --  HY5  --  interacts with  --  BHLH101
61 CRF1  --  interacts with  --  HY5  --  interacts with  --  AT5G57150
62 CRF1  --  interacts with  --  HY5  --  interacts with  --  AT5G18450
63 CRF1  --  interacts with  --  HY5  --  interacts with  --  BHLH039; ORG3
64 CRF1  --  interacts with  --  HY5  --  interacts with  --  AtMYB79; MYB79
65 CRF1  --  interacts with  --  HY5  --  interacts with  --  CES/CESTA
66 CRF1  --  interacts with  --  HY5  --  interacts with  --  AT2G41130
67 CRF1  --  interacts with  --  HY5  --  interacts with  --  RAP2.11
68 CRF1  --  interacts with  --  HY5  --  interacts with  --  CHD3; CHR6; CKH2; GYM; PKL; SSL2
69 CRF1  --  interacts with  --  HY5  --  interacts with  --  CIP8
70 CRF1  --  interacts with  --  HY5  --  is modified by  --  ATCKA2; CKA2
71 CRF1  --  interacts with  --  ARR12  --  regulates the expression of   --  ATPIN1
72 CRF1  --  interacts with  --  ARR12  --  regulates the expression of   --  IAA3
73 CRF1  --  interacts with  --  ARR12  --  is regulated by  --  RGA1 family99, transcription factor gene
74 CRF1  --  interacts with  --  ARR12  --  is a member of  --  ARR1 family70, response regulator and putative novel transcription factor gene
75 CRF1  --  interacts with  --  ARR12  --  is a member of  --  ARR1 family72, response regulator and putative novel transcription factor gene
76 CRF1  --  interacts with  --  ARR12  --  interacts with  --  AT3G59940
77 CRF1  --  interacts with  --  ARR12  --  interacts with  --  AT2G44130
78 CRF1  --  interacts with  --  ARR12  --  interacts with  --  AT1G15670
79 CRF1  --  interacts with  --  ARR12  --  interacts with  --  AT1G80440
80 CRF1  --  interacts with  --  ARR7  --  interacts with  --  AT5G08720
81 CRF1  --  interacts with  --  ARR7  --  interacts with  --  LSH3; OBO1
82 CRF1  --  interacts with  --  ARR7  --  interacts with  --  CRWN3; LINC3
83 CRF1  --  interacts with  --  ARR7  --  interacts with  --  NAP1;2; NFA02; NFA2
84 CRF1  --  interacts with  --  ARR7  --  interacts with  --  AT5G48630
85 CRF1  --  interacts with  --  ARR7  --  interacts with  --  AZF3; ZF3
86 CRF1  --  interacts with  --  ARR7  --  interacts with  --  atnudt3; NUDT3
87 CRF1  --  interacts with  --  ARR7  --  interacts with  --  BIP; BIP2
88 CRF1  --  interacts with  --  ARR7  --  is a member of  --  ARR3 family69, response regulator and putative novel transcription factor gene
89 CRF1  --  interacts with  --  ARR7  --  is a member of  --  ARR3 family73, response regulator and putative novel transcription factor gene
90 CRF1  --  interacts with  --  ARR7  --  is regulated by  --  ARF5
91 CRF1  --  interacts with  --  ARR7  --  is regulated by  --  PGA6; WUS; WUS1
92 CRF1  --  interacts with  --  AHP5  --  interacts with  --  ATUPS1; UPS1
93 CRF1  --  interacts with  --  AHP5  --  interacts with  --  AT3G02065
94 CRF1  --  interacts with  --  AHP5  --  interacts with  --  ARR1
95 CRF1  --  interacts with  --  AHP5  --  interacts with  --  ARR4
96 CRF1  --  interacts with  --  AHP5  --  interacts with  --  ATMYC2
97 CRF1  --  interacts with  --  AHP5  --  interacts with  --  AT4G14815
98 CRF1  --  interacts with  --  AHP5  --  interacts with  --  CKI1
99 CRF1  --  interacts with  --  AHP5  --  interacts with  --  AHK5; CKI2; HK5
100 CRF1  --  interacts with  --  AHP5  --  interacts with  --  ARR22
101 CRF1  --  interacts with  --  AHP5  --  is a member of  --  AHP1 family68, coding gene
102 CRF1  --  interacts with  --  AHP5  --  is a member of  --  AHP1 family66, coding gene
103 CRF1  --  interacts with  --  AHP3  --  interacts with  --  TCP10
104 CRF1  --  interacts with  --  AHP3  --  interacts with  --  ARR2
105 CRF1  --  interacts with  --  AHP3  --  interacts with  --  ARR9
106 CRF1  --  interacts with  --  AHP3  --  interacts with  --  ARR8
107 CRF1  --  interacts with  --  AHP3  --  interacts with  --  ARR5
108 CRF1  --  interacts with  --  AHP3  --  interacts with  --  ARR3
109 CRF1  --  interacts with  --  AHP3  --  interacts with  --  AHK2
110 CRF1  --  interacts with  --  AHP2  --  interacts with  --  ATCNGC18; CNGC18
111 CRF1  --  interacts with  --  AHP2  --  interacts with  --  ABCG10
112 CRF1  --  interacts with  --  AHP2  --  interacts with  --  ATYSL3; YSL3
113 CRF1  --  interacts with  --  AHP2  --  interacts with  --  ATMND1
114 CRF1  --  interacts with  --  AHP2  --  interacts with  --  ARR10
115 CRF1  --  interacts with  --  AHP2  --  interacts with  --  AT5G03200
116 CRF1  --  interacts with  --  AHP2  --  interacts with  --  CKI1; CKL11
117 CRF1  --  interacts with  --  AHP2  --  interacts with  --  ETR1
118 CRF1  --  interacts with  --  AHP2  --  interacts with  --  ARR14
119 CRF1  --  interacts with  --  AHP2  --  interacts with  --  AHK4
120 CRF1  --  interacts with  --  AHP1  --  interacts with  --  ATELF5A-2; ELF5A-2; FBR12
121 CRF1  --  interacts with  --  AHP1  --  interacts with  --  AHK1; ATHK1; HK1
122 CRF1  --  interacts with  --  AHP1  --  has similar expression pattern (mutual information value=0.804269) with  --  AT2G38380
123 CRF1  --  interacts with  --  AHP1  --  has similar expression pattern (mutual information value=0.804269) with  --  AT2G38390
124 CRF1  --  interacts with  --  AHP1  --  has similar expression pattern (mutual information value=0.869634) with  --  ZIP3
125 CRF1  --  interacts with  --  AHP1  --  has similar expression pattern (mutual information value=0.87074) with  --  AT1G30870
126 CRF1  --  interacts with  --  AHP1  --  has similar expression pattern (mutual information value=0.802155) with  --  AT1G14960
127 CRF1  --  interacts with  --  AHP1  --  has similar expression pattern (mutual information value=0.885296) with  --  AtGH9C1; GH9C1
128 CRF1  --  interacts with  --  AHP1  --  has similar expression pattern (mutual information value=0.818454) with  --  ATEXT3; EXT3; RSH
129 CRF1  --  interacts with  --  AHP1  --  has similar expression pattern (mutual information value=0.903033) with  --  AT3G25930
130 CRF1  --  interacts with  --  AHP1  --  has similar expression pattern (mutual information value=0.869435) with  --  RHS13
131 CRF1  --  interacts with  --  AHP1  --  has similar expression pattern (mutual information value=0.844871) with  --  AT4G12545
132 CRF1  --  interacts with  --  AHP1  --  has similar expression pattern (mutual information value=0.844871) with  --  AIR1
133 CRF1  --  interacts with  --  AHP1  --  has similar expression pattern (mutual information value=0.871932) with  --  AT4G22212
134 CRF1  --  interacts with  --  AHP1  --  has similar expression pattern (mutual information value=0.853437) with  --  AT4G26010
135 CRF1  --  interacts with  --  AHP1  --  has similar expression pattern (mutual information value=0.846641) with  --  AT4G26220
136 CRF1  --  interacts with  --  AHP1  --  has similar expression pattern (mutual information value=0.856675) with  --  AT4G38080
137 CRF1  --  interacts with  --  AHP1  --  has similar expression pattern (mutual information value=0.832831) with  --  AT5G05500
138 CRF1  --  interacts with  --  AHP1  --  has similar expression pattern (mutual information value=0.908127) with  --  AT5G23840
139 CRF1  --  interacts with  --  AHP1  --  has similar expression pattern (mutual information value=0.876524) with  --  AT5G23830
140 CRF1  --  interacts with  --  AHP1  --  has similar expression pattern (mutual information value=0.952507) with  --  AT5G42510
141 CRF1  --  interacts with  --  AHP1  --  has similar expression pattern (mutual information value=0.952507) with  --  AT5G42500
142 CRF1  --  interacts with  --  AHP1  --  has similar expression pattern (mutual information value=0.953894) with  --  LCR74; PDF2.5
143 CRF1  --  interacts with  --  AHP1  --  is a member of  --  AHP1 family67, coding gene
144 CRF1  --  interacts with  --  AHP1  --  is modified by  --  MPK16
145 CRF1  --  interacts with  --  CRF7  --  has similar expression pattern (mutual information value=0.872017) with  --  ENR1; MOD1
146 CRF1  --  interacts with  --  CRF7  --  has similar expression pattern (mutual information value=0.848578) with  --  AT2G27480
147 CRF1  --  interacts with  --  CRF7  --  has similar expression pattern (mutual information value=0.859484) with  --  AT2G20410
148 CRF1  --  interacts with  --  CRF7  --  has similar expression pattern (mutual information value=0.998745) with  --  VHA-A
149 CRF1  --  interacts with  --  CRF7  --  has similar expression pattern (mutual information value=0.864908) with  --  AT1G09320
150 CRF1  --  interacts with  --  CRF7  --  has similar expression pattern (mutual information value=0.828648) with  --  WRKY4
151 CRF1  --  interacts with  --  CRF7  --  has similar expression pattern (mutual information value=0.801488) with  --  AT1G53520
152 CRF1  --  interacts with  --  CRF7  --  has similar expression pattern (mutual information value=0.813183) with  --  AT3G10020
153 CRF1  --  interacts with  --  CRF7  --  has similar expression pattern (mutual information value=0.809599) with  --  ASIL2
154 CRF1  --  interacts with  --  CRF7  --  has similar expression pattern (mutual information value=0.830308) with  --  AT4G02880
155 CRF1  --  interacts with  --  CRF7  --  has similar expression pattern (mutual information value=0.990684) with  --  ARI1; ATARI1
156 CRF1  --  interacts with  --  CRF7  --  has similar expression pattern (mutual information value=0.834486) with  --  XTH7
157 CRF1  --  interacts with  --  CRF7  --  has similar expression pattern (mutual information value=0.895249) with  --  AT5G01350
158 CRF1  --  interacts with  --  CRF7  --  has similar expression pattern (mutual information value=0.87304) with  --  AT5G04760
159 CRF1  --  interacts with  --  CRF7  --  has similar expression pattern (mutual information value=1.15645) with  --  AT5G08535
160 CRF1  --  interacts with  --  CRF7  --  has similar expression pattern (mutual information value=0.943285) with  --  DiT1
161 CRF1  --  interacts with  --  CRF7  --  has similar expression pattern (mutual information value=0.846832) with  --  AT5G62910
162 CRF1  --  interacts with  --  CRF7  --  has similar expression pattern (mutual information value=0.849593) with  --  AT5G24870
163 CRF1  --  interacts with  --  CRF7  --  has similar expression pattern (mutual information value=1.13595) with  --  SBP1
164 CRF1  --  interacts with  --  CRF7  --  has similar expression pattern (mutual information value=0.915965) with  --  AT1G25988
165 CRF1  --  interacts with  --  CRF7  --  has similar expression pattern (mutual information value=0.915965) with  --  AT1G25682
166 CRF1  --  interacts with  --  CRF7  --  has similar expression pattern (mutual information value=0.818632) with  --  ATE2FB; E2F1; E2FB
167 CRF1  --  interacts with  --  CRF6  --  interacts with  --  ATSWI3B?
168 CRF1  --  interacts with  --  CRF2  --  is the target gene of  --  ath-miR5641
169 CRF1  --  is a member of  --  CRF1 family74, transcription factor gene  --  is a member of  --  CRF complex19
   Funding by the National Science Foundation    Funding by the Oklahoma Center for the Advancement of Science & Technology    Additional funding by the Samuel Roberts Noble Foundation

Copyright © The Zhao Lab

Disclaimer | Contact